Wall clock time and date at job start Tue Mar 31 2020 13:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46820 * 2 1 4 4 C 1.50695 * 109.47331 * 239.99810 * 2 1 3 5 5 H 1.08004 * 120.00482 * 275.33875 * 4 2 1 6 6 C 1.37882 * 120.00074 * 95.33688 * 4 2 1 7 7 N 1.31508 * 120.00120 * 174.74900 * 6 4 2 8 8 Si 1.86803 * 119.99613 * 354.75033 * 6 4 2 9 9 H 1.48501 * 109.46877 * 94.58177 * 8 6 4 10 10 H 1.48500 * 109.47324 * 214.57971 * 8 6 4 11 11 H 1.48498 * 109.47303 * 334.58224 * 8 6 4 12 12 O 1.45207 * 109.46837 * 119.99978 * 2 1 3 13 13 C 1.34231 * 116.99928 * 269.99853 * 12 2 1 14 14 O 1.20828 * 119.99923 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99958 * 180.02562 * 13 12 2 16 16 H 1.08998 * 108.43479 * 21.76970 * 15 13 12 17 17 C 1.51832 * 108.60849 * 139.62407 * 15 13 12 18 18 C 1.53617 * 109.06938 * 182.63475 * 17 15 13 19 19 S 1.81771 * 107.03331 * 288.59019 * 18 17 15 20 20 O 1.42102 * 110.63919 * 293.50222 * 19 18 17 21 21 O 1.42090 * 110.73443 * 156.34199 * 19 18 17 22 22 C 1.76581 * 103.66346 * 44.89953 * 19 18 17 23 23 C 1.38797 * 117.86848 * 168.39423 * 22 19 18 24 24 C 1.37920 * 120.65371 * 178.39008 * 23 22 19 25 25 C 1.38278 * 119.41744 * 0.05110 * 24 23 22 26 26 C 1.37706 * 119.89684 * 0.40098 * 25 24 23 27 27 C 1.37535 * 121.87412 * 347.59011 * 22 19 18 28 28 H 1.08998 * 109.47040 * 65.01744 * 1 2 3 29 29 H 1.09007 * 109.46918 * 185.01429 * 1 2 3 30 30 H 1.08993 * 109.47214 * 305.01315 * 1 2 3 31 31 H 0.97001 * 119.99910 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.53657 * 302.51437 * 17 15 13 33 33 H 1.08999 * 109.53407 * 62.75833 * 17 15 13 34 34 H 1.09000 * 109.93815 * 169.20663 * 18 17 15 35 35 H 1.09002 * 110.01136 * 48.01000 * 18 17 15 36 36 H 1.07996 * 119.67083 * 358.37455 * 23 22 19 37 37 H 1.08005 * 120.29359 * 180.02562 * 24 23 22 38 38 H 1.07994 * 120.05373 * 180.38045 * 25 24 23 39 39 H 1.07996 * 119.50729 * 179.87758 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1304 -1.7860 -1.2308 6 6 2.3669 0.0127 -2.3557 7 7 2.9020 -0.5943 -3.3924 8 14 2.0601 1.8546 -2.4076 9 1 3.2941 2.5736 -2.0006 10 1 1.6860 2.2555 -3.7877 11 1 0.9564 2.1991 -1.4758 12 8 2.0140 -0.6845 1.1856 13 6 2.2171 0.0640 2.2812 14 8 1.9973 1.2517 2.2506 15 6 2.7192 -0.5770 3.5493 16 1 3.2125 -1.5138 3.2900 17 6 3.7401 0.3476 4.1882 18 6 4.3078 -0.3251 5.4472 19 16 2.9901 -0.3098 6.6993 20 8 2.6978 1.0211 7.1025 21 8 3.1942 -1.3394 7.6569 22 6 1.5572 -0.8215 5.8031 23 6 0.4208 -1.1499 6.5292 24 6 -0.7403 -1.5250 5.8864 25 6 -0.7665 -1.5736 4.5047 26 6 0.3641 -1.2567 3.7853 27 6 1.5434 -0.8828 4.4292 28 1 -0.3633 0.4340 -0.9315 29 1 -0.3633 -1.0238 0.0898 30 1 -0.3633 0.5896 0.8416 31 1 3.1377 -0.0855 -4.1839 32 1 4.5480 0.5417 3.4828 33 1 3.2599 1.2871 4.4619 34 1 5.1713 0.2328 5.8094 35 1 4.5961 -1.3522 5.2235 36 1 0.4462 -1.1115 7.6082 37 1 -1.6214 -1.7789 6.4572 38 1 -1.6720 -1.8601 3.9907 39 1 0.3372 -1.2987 2.7065 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793145391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:34 Heat of formation + Delta-G solvation = -129.777144 kcal Electronic energy + Delta-G solvation = -25870.931435 eV Core-core repulsion = 22063.984646 eV Total energy + Delta-G solvation = -3806.946790 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.74337 -39.12886 -37.28596 -36.57736 -36.14686 -35.38531 -33.22221 -31.62546 -31.33559 -30.73809 -28.20547 -25.52794 -23.97149 -23.27332 -22.82341 -20.89563 -19.81246 -19.07373 -18.04920 -17.62422 -17.06314 -16.70684 -16.44415 -16.13101 -15.69847 -15.37183 -14.88315 -14.84346 -14.36969 -14.03644 -13.80760 -13.30429 -13.03347 -12.84425 -12.82658 -12.68716 -12.46104 -12.31781 -12.25420 -12.19175 -11.93235 -11.72486 -11.51296 -11.32094 -11.11980 -10.97310 -10.73515 -10.50850 -10.20695 -9.92096 -9.67486 -9.53569 -9.28855 -9.01825 -8.81821 -6.38943 -4.43188 -0.14958 0.61826 1.02471 2.52667 2.54843 3.00700 3.14968 3.21525 3.26281 3.33689 3.37958 3.98251 4.01310 4.16151 4.28369 4.41486 4.62588 4.69517 4.80368 4.90002 4.95125 5.01898 5.11252 5.20229 5.35595 5.47208 5.51985 5.62044 5.72637 5.84132 6.00093 6.03241 6.19138 6.28068 6.34905 6.51857 6.61337 6.98930 7.17182 7.36946 8.06321 8.41509 8.71124 9.20029 10.72033 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.003921 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.831607 B = 7139.961395 C = 7830.139989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.182 3.818 3 H 0.049 0.951 4 C -0.523 4.523 5 H 0.086 0.914 6 C 0.084 3.916 7 N -0.877 5.877 8 Si 0.867 3.133 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.258 1.258 12 O -0.343 6.343 13 C 0.461 3.539 14 O -0.509 6.509 15 C -0.070 4.070 16 H 0.132 0.868 17 C -0.102 4.102 18 C -0.597 4.597 19 S 2.492 3.508 20 O -0.930 6.930 21 O -0.938 6.938 22 C -0.629 4.629 23 C -0.028 4.028 24 C -0.133 4.133 25 C -0.063 4.063 26 C -0.135 4.135 27 C 0.017 3.983 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.271 0.729 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -1.710 18.133 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.067 0.933 4 C -0.560 4.560 5 H 0.104 0.896 6 C -0.121 4.121 7 N -0.513 5.513 8 Si 0.693 3.307 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.182 1.182 12 O -0.259 6.259 13 C 0.303 3.697 14 O -0.399 6.399 15 C -0.089 4.089 16 H 0.150 0.850 17 C -0.140 4.140 18 C -0.727 4.727 19 S 2.672 3.328 20 O -0.927 6.927 21 O -0.935 6.935 22 C -0.715 4.715 23 C -0.047 4.047 24 C -0.151 4.151 25 C -0.081 4.081 26 C -0.153 4.153 27 C 0.016 3.984 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.494 -1.133 18.725 18.819 hybrid contribution -0.369 0.717 -1.216 1.459 sum -1.863 -0.416 17.509 17.612 Atomic orbital electron populations 1.22315 0.97568 1.00991 1.00642 1.21019 0.91351 0.94253 0.80475 0.93290 1.20758 1.45586 0.96286 0.93341 0.89607 1.24898 0.93147 0.98542 0.95555 1.69868 1.39186 1.36889 1.05389 0.86995 0.80069 0.85471 0.78212 1.19693 1.20462 1.18163 1.86713 1.75321 1.43359 1.20532 1.22802 0.75147 0.86059 0.85701 1.90630 1.48082 1.16657 1.84488 1.19958 0.94853 1.02521 0.91578 0.85005 1.21218 0.98706 0.98468 0.95609 1.30278 1.17161 1.11444 1.13809 1.05665 0.76363 0.74984 0.75783 1.93624 1.83003 1.36382 1.79735 1.93591 1.85349 1.58161 1.56426 1.29868 1.19629 1.18165 1.03882 1.20735 0.91257 0.93171 0.99561 1.21242 0.98156 1.00889 0.94846 1.21348 0.98107 0.94358 0.94258 1.21776 0.92629 0.99325 1.01608 1.18852 0.94413 0.94038 0.91092 0.91452 0.92534 0.95048 0.91887 0.87293 0.87974 0.83386 0.83563 0.84823 0.84706 0.84791 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.24 37.16 0.34 -2.91 16 2 C 0.18 4.26 2.10 -27.88 -0.06 4.20 16 3 H 0.05 1.21 4.61 -51.93 -0.24 0.97 16 4 C -0.52 -14.06 9.24 -34.44 -0.32 -14.38 16 5 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 7 N -0.88 -25.18 13.96 55.43 0.77 -24.40 16 8 Si 0.87 20.46 26.57 -169.99 -4.52 15.94 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.89 6.21 56.52 0.35 -5.54 16 12 O -0.34 -7.16 9.02 -39.26 -0.35 -7.52 16 13 C 0.46 8.42 5.29 36.01 0.19 8.61 16 14 O -0.51 -10.61 15.58 -18.75 -0.29 -10.91 16 15 C -0.07 -0.93 2.40 -93.85 -0.23 -1.15 16 16 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 17 C -0.10 -1.11 4.72 -27.00 -0.13 -1.24 16 18 C -0.60 -4.59 6.58 37.48 0.25 -4.35 16 19 S 2.49 27.16 5.22 -107.50 -0.56 26.60 16 20 O -0.93 -12.99 17.93 -57.52 -1.03 -14.02 16 21 O -0.94 -12.01 17.81 -57.52 -1.02 -13.03 16 22 C -0.63 -7.76 5.68 -39.63 -0.23 -7.98 16 23 C -0.03 -0.32 9.48 -39.49 -0.37 -0.70 16 24 C -0.13 -1.37 10.07 -39.68 -0.40 -1.76 16 25 C -0.06 -0.71 10.03 -39.76 -0.40 -1.11 16 26 C -0.13 -1.84 8.96 -39.32 -0.35 -2.20 16 27 C 0.02 0.23 5.53 -104.75 -0.58 -0.35 16 28 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 29 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.21 7.78 -51.93 -0.40 0.80 16 34 H 0.15 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.15 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.13 1.26 8.05 -52.49 -0.42 0.83 16 37 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.14 2.08 6.16 -52.49 -0.32 1.76 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -35.09 336.51 -9.07 -44.16 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.76 Total: 1.22 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.38 Total: -23.12 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.77 Total: -24.40 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -2.70 Total: -45.47 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.52 Total: 15.94 kcal Atomic # 16 Polarization: 27.16 SS G_CDS: -0.56 Total: 26.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.09 -9.07 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793145391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.616 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds