Wall clock time and date at job start Tue Mar 31 2020 14:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48501 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00059 * 3 2 1 6 6 H 1.48500 * 109.47354 * 59.99801 * 3 2 1 7 7 C 1.38679 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00492 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99654 * 359.97438 * 7 2 1 10 10 C 1.35578 * 116.99617 * 185.06414 * 9 7 2 11 11 C 1.38788 * 120.15454 * 354.39952 * 10 9 7 12 12 C 1.38073 * 120.06630 * 179.97438 * 11 10 9 13 13 C 1.38532 * 120.39207 * 359.96267 * 12 11 10 14 14 C 1.37878 * 120.31080 * 0.03766 * 13 12 11 15 15 C 1.39604 * 119.92417 * 359.97438 * 14 13 12 16 16 C 1.47598 * 120.19435 * 180.02562 * 15 14 13 17 17 N 1.32075 * 126.56947 * 0.02562 * 16 15 14 18 18 C 1.34946 * 105.50012 * 179.97438 * 17 16 15 19 19 C 1.48361 * 126.31140 * 180.02562 * 18 17 16 20 20 C 1.39384 * 120.06600 * 359.73201 * 19 18 17 21 21 C 1.37871 * 119.93893 * 179.69382 * 20 19 18 22 22 C 1.38862 * 120.06464 * 0.60067 * 21 20 19 23 23 O 1.35826 * 119.94392 * 179.69924 * 22 21 20 24 24 C 1.38870 * 120.12307 * 359.66910 * 22 21 20 25 25 C 1.37876 * 120.05828 * 0.02968 * 24 22 21 26 26 N 1.30893 * 107.37268 * 0.02562 * 18 17 16 27 27 O 1.21270 * 110.34866 * 359.72520 * 26 18 17 28 28 H 0.97003 * 120.00220 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.96827 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.80207 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.84475 * 180.02562 * 13 12 11 32 32 H 1.07996 * 120.03997 * 180.25961 * 14 13 12 33 33 H 1.08008 * 120.03140 * 359.96754 * 20 19 18 34 34 H 1.08003 * 119.96823 * 180.26854 * 21 20 19 35 35 H 0.96697 * 113.99989 * 269.97470 * 23 22 21 36 36 H 1.07992 * 119.96820 * 180.02562 * 24 22 21 37 37 H 1.08005 * 120.02744 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8906 2.3965 1.2125 7 6 2.0087 -1.2010 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0690 -3.5032 0.1056 11 6 3.4554 -3.4402 0.0911 12 6 4.2015 -4.5969 0.1998 13 6 3.5748 -5.8261 0.3246 14 6 2.1985 -5.9070 0.3408 15 6 1.4313 -4.7458 0.2315 16 6 -0.0425 -4.8254 0.2488 17 7 -0.7700 -5.9219 0.3617 18 6 -2.0539 -5.5077 0.3295 19 6 -3.2577 -6.3698 0.4231 20 6 -3.1194 -7.7507 0.5531 21 6 -4.2398 -8.5487 0.6461 22 6 -5.5054 -7.9793 0.5979 23 8 -6.6076 -8.7684 0.6837 24 6 -5.6464 -6.6044 0.4628 25 6 -4.5293 -5.8009 0.3755 26 7 -2.0413 -4.2052 0.2005 27 8 -0.9002 -3.7968 0.1578 28 1 -0.4850 0.8401 -0.0004 29 1 3.9511 -2.4856 -0.0053 30 1 5.2801 -4.5430 0.1876 31 1 4.1670 -6.7251 0.4094 32 1 1.7145 -6.8670 0.4425 33 1 -2.1354 -8.1947 0.5853 34 1 -4.1331 -9.6183 0.7513 35 1 -6.9328 -9.0840 -0.1705 36 1 -6.6318 -6.1642 0.4260 37 1 -4.6395 -4.7316 0.2709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794664341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:37 Heat of formation + Delta-G solvation = 54.703626 kcal Electronic energy + Delta-G solvation = -25506.978790 eV Core-core repulsion = 21604.880487 eV Total energy + Delta-G solvation = -3902.098303 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.68847 -39.79156 -39.28316 -37.08850 -36.70512 -34.92457 -32.85373 -32.45846 -31.20631 -30.10290 -29.49180 -28.85953 -25.63497 -24.24385 -23.95014 -22.65005 -22.03424 -21.47329 -20.48146 -18.59855 -18.23373 -17.96581 -17.29016 -16.69636 -15.86861 -15.76962 -15.44814 -15.13400 -14.77161 -14.51956 -14.07259 -13.95779 -13.82896 -13.57748 -13.23848 -12.89118 -12.81574 -12.34233 -12.17387 -11.89288 -11.74839 -11.71915 -11.20899 -11.16155 -11.05489 -10.90109 -10.68879 -10.55293 -10.39106 -10.13920 -9.65650 -9.15706 -9.04798 -8.56511 -8.13876 -7.45308 -6.64941 -4.23785 0.73025 1.19219 1.23000 2.15049 2.37090 2.91888 3.02654 3.03657 3.09778 3.50616 3.67440 3.78348 3.85377 4.03729 4.36084 4.42894 4.81851 4.84434 4.87202 4.96579 5.24007 5.29598 5.49384 5.53486 5.57370 5.65565 5.79913 5.89223 6.00720 6.05242 6.23854 6.26345 6.40790 6.45312 6.51607 6.55280 6.60786 6.83337 6.96352 7.07840 7.15028 7.41877 7.49969 7.74524 8.76104 8.80318 9.37685 10.49069 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003238 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.001832 B = 8644.860861 C =10496.366992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.045 3.955 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.397 4.397 8 H 0.100 0.900 9 O -0.146 6.146 10 C 0.176 3.824 11 C -0.231 4.231 12 C -0.045 4.045 13 C -0.223 4.223 14 C -0.011 4.011 15 C -0.134 4.134 16 C 0.264 3.736 17 N -0.503 5.503 18 C 0.190 3.810 19 C -0.011 4.011 20 C -0.063 4.063 21 C -0.149 4.149 22 C 0.112 3.888 23 O -0.500 6.500 24 C -0.147 4.147 25 C -0.071 4.071 26 N -0.384 5.384 27 O 0.121 5.879 28 H 0.275 0.725 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.390 0.610 36 H 0.134 0.866 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -12.259 -0.681 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.472 4.472 8 H 0.117 0.883 9 O -0.044 6.044 10 C 0.117 3.883 11 C -0.250 4.250 12 C -0.064 4.064 13 C -0.242 4.242 14 C -0.030 4.030 15 C -0.139 4.139 16 C 0.052 3.948 17 N -0.239 5.239 18 C -0.080 4.080 19 C -0.013 4.013 20 C -0.083 4.083 21 C -0.167 4.167 22 C 0.067 3.933 23 O -0.310 6.310 24 C -0.165 4.165 25 C -0.091 4.091 26 N -0.090 5.090 27 O 0.058 5.942 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.247 0.753 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.507 -11.829 -0.107 12.659 hybrid contribution 0.573 0.860 -0.503 1.149 sum -3.935 -10.969 -0.610 11.669 Atomic orbital electron populations 1.70072 1.06023 1.28253 1.42186 1.25414 0.95904 0.99109 0.95887 0.85598 0.79213 0.79866 0.78507 1.18822 1.19901 1.19886 1.21533 0.92130 0.80281 1.53289 0.88284 1.83971 1.34643 1.11623 1.74202 1.19282 0.90523 0.86807 0.91693 1.21103 0.92801 0.99634 1.11466 1.21002 0.99016 0.92182 0.94183 1.20542 0.93676 0.97471 1.12515 1.20711 0.93251 0.95794 0.93274 1.16278 0.82918 0.92867 1.21813 1.26053 0.94826 0.80588 0.93368 1.72121 1.00197 1.26764 1.24794 1.23632 0.92289 0.88823 1.03236 1.17419 0.88528 0.91717 1.03591 1.21111 0.99422 0.91709 0.96059 1.21327 0.91415 1.00685 1.03271 1.18601 0.86102 0.89322 0.99317 1.84794 1.43502 1.67925 1.34777 1.21307 0.99312 0.92965 1.02944 1.21129 0.90504 1.00784 0.96676 1.74875 1.00539 1.12678 1.20929 1.85658 1.09801 1.34365 1.64387 0.91507 0.84587 0.86675 0.86532 0.85455 0.84162 0.84835 0.75343 0.84839 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.20 13.67 55.48 0.76 -22.44 16 2 C 0.05 1.16 5.49 -17.52 -0.10 1.06 16 3 Si 0.94 19.15 29.55 -169.99 -5.02 14.12 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.40 -10.22 9.49 30.90 0.29 -9.93 16 8 H 0.10 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.15 -3.86 8.20 -17.92 -0.15 -4.01 16 10 C 0.18 3.99 6.66 -38.63 -0.26 3.73 16 11 C -0.23 -4.47 9.16 -39.44 -0.36 -4.84 16 12 C -0.04 -0.71 10.03 -39.53 -0.40 -1.11 16 13 C -0.22 -3.44 10.03 -39.60 -0.40 -3.84 16 14 C -0.01 -0.18 9.70 -39.20 -0.38 -0.56 16 15 C -0.13 -2.81 5.89 -104.82 -0.62 -3.43 16 16 C 0.26 5.85 7.95 -13.85 -0.11 5.74 16 17 N -0.50 -10.21 10.95 -10.24 -0.11 -10.32 16 18 C 0.19 3.80 7.79 -156.28 -1.22 2.58 16 19 C -0.01 -0.17 5.88 -104.88 -0.62 -0.79 16 20 C -0.06 -0.86 9.69 -39.29 -0.38 -1.24 16 21 C -0.15 -1.68 9.97 -39.49 -0.39 -2.08 16 22 C 0.11 1.26 6.71 -39.12 -0.26 1.00 16 23 O -0.50 -4.68 13.49 -19.19 -0.26 -4.94 16 24 C -0.15 -1.74 9.97 -39.48 -0.39 -2.14 16 25 C -0.07 -1.02 9.68 -39.29 -0.38 -1.40 16 26 N -0.38 -8.68 11.83 31.23 0.37 -8.31 16 27 O 0.12 2.96 9.98 -2.01 -0.02 2.94 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.14 2.57 5.64 -52.49 -0.30 2.27 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.13 1.99 7.87 -52.49 -0.41 1.57 16 33 H 0.14 1.83 7.87 -52.48 -0.41 1.42 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.39 1.67 9.06 45.56 0.41 2.09 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.14 2.00 7.86 -52.48 -0.41 1.59 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -31.06 337.13 -7.54 -38.60 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.22 Total: 6.51 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -5.97 Total: -17.24 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 1.02 Total: -41.08 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.43 Total: -6.00 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.06 -7.54 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794664341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.306 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds