Wall clock time and date at job start Tue Mar 31 2020 14:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48501 * 109.47371 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00059 * 3 2 1 6 6 H 1.48500 * 109.47354 * 59.99801 * 3 2 1 7 7 C 1.38679 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00492 * 179.97438 * 7 2 1 9 9 O 1.34813 * 119.99654 * 359.97438 * 7 2 1 10 10 C 1.35578 * 116.99617 * 185.06414 * 9 7 2 11 11 C 1.38788 * 120.15454 * 354.39952 * 10 9 7 12 12 C 1.38073 * 120.06630 * 179.97438 * 11 10 9 13 13 C 1.38532 * 120.39207 * 359.96267 * 12 11 10 14 14 C 1.37878 * 120.31080 * 0.03766 * 13 12 11 15 15 C 1.39604 * 119.92417 * 359.97438 * 14 13 12 16 16 C 1.47598 * 120.19435 * 180.02562 * 15 14 13 17 17 N 1.32075 * 126.56947 * 0.02562 * 16 15 14 18 18 C 1.34946 * 105.50012 * 179.97438 * 17 16 15 19 19 C 1.48361 * 126.31140 * 180.02562 * 18 17 16 20 20 C 1.39384 * 120.06600 * 359.73201 * 19 18 17 21 21 C 1.37871 * 119.93893 * 179.69382 * 20 19 18 22 22 C 1.38862 * 120.06464 * 0.60067 * 21 20 19 23 23 O 1.35826 * 119.94392 * 179.69924 * 22 21 20 24 24 C 1.38870 * 120.12307 * 359.66910 * 22 21 20 25 25 C 1.37876 * 120.05828 * 0.02968 * 24 22 21 26 26 N 1.30893 * 107.37268 * 0.02562 * 18 17 16 27 27 O 1.21270 * 110.34866 * 359.72520 * 26 18 17 28 28 H 0.97003 * 120.00220 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.96827 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.80207 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.84475 * 180.02562 * 13 12 11 32 32 H 1.07996 * 120.03997 * 180.25961 * 14 13 12 33 33 H 1.08008 * 120.03140 * 359.96754 * 20 19 18 34 34 H 1.08003 * 119.96823 * 180.26854 * 21 20 19 35 35 H 0.96697 * 113.99989 * 269.97470 * 23 22 21 36 36 H 1.07992 * 119.96820 * 180.02562 * 24 22 21 37 37 H 1.08005 * 120.02744 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3464 -0.0006 5 1 1.8906 2.3965 -1.2125 6 1 1.8906 2.3965 1.2125 7 6 2.0087 -1.2010 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0690 -3.5032 0.1056 11 6 3.4554 -3.4402 0.0911 12 6 4.2015 -4.5969 0.1998 13 6 3.5748 -5.8261 0.3246 14 6 2.1985 -5.9070 0.3408 15 6 1.4313 -4.7458 0.2315 16 6 -0.0425 -4.8254 0.2488 17 7 -0.7700 -5.9219 0.3617 18 6 -2.0539 -5.5077 0.3295 19 6 -3.2577 -6.3698 0.4231 20 6 -3.1194 -7.7507 0.5531 21 6 -4.2398 -8.5487 0.6461 22 6 -5.5054 -7.9793 0.5979 23 8 -6.6076 -8.7684 0.6837 24 6 -5.6464 -6.6044 0.4628 25 6 -4.5293 -5.8009 0.3755 26 7 -2.0413 -4.2052 0.2005 27 8 -0.9002 -3.7968 0.1578 28 1 -0.4850 0.8401 -0.0004 29 1 3.9511 -2.4856 -0.0053 30 1 5.2801 -4.5430 0.1876 31 1 4.1670 -6.7251 0.4094 32 1 1.7145 -6.8670 0.4425 33 1 -2.1354 -8.1947 0.5853 34 1 -4.1331 -9.6183 0.7513 35 1 -6.9328 -9.0840 -0.1705 36 1 -6.6318 -6.1642 0.4260 37 1 -4.6395 -4.7316 0.2709 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794664341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:36 Heat of formation + Delta-G solvation = 33.303504 kcal Electronic energy + Delta-G solvation = -25507.906769 eV Core-core repulsion = 21604.880487 eV Total energy + Delta-G solvation = -3903.026282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.33581 -40.91360 -40.75010 -38.32376 -38.05627 -36.43432 -34.48400 -34.17433 -32.23488 -31.45311 -30.87287 -30.33001 -27.45907 -25.71144 -25.33403 -23.78469 -23.39214 -22.99555 -21.87592 -19.94016 -19.55189 -19.40610 -18.97902 -18.24173 -17.16049 -17.08135 -16.42898 -16.40286 -16.34881 -16.08605 -15.70041 -15.33078 -15.09300 -14.72666 -14.54112 -14.48997 -14.03318 -13.68251 -13.56334 -13.33822 -13.19283 -13.06113 -12.74862 -12.64031 -12.53752 -12.34732 -12.11839 -12.08209 -11.64971 -11.48089 -11.33683 -10.86345 -10.15083 -9.81005 -9.52205 -9.07289 -8.49358 -6.18503 -0.53094 -0.27934 0.23818 0.65113 0.89153 1.36533 1.44749 1.45809 1.55100 1.88580 2.13699 2.41471 2.59477 2.79647 2.95849 3.11187 3.18082 3.29040 3.77104 3.88949 3.95828 4.10717 4.22871 4.25374 4.43510 4.44341 4.53636 4.63521 4.69319 4.78986 4.89400 4.94035 5.06023 5.13611 5.18525 5.25749 5.38466 5.50302 5.55451 5.65085 5.66162 5.92724 6.08420 6.81222 6.91656 7.12922 7.64450 8.70268 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.003238 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.001832 B = 8644.860861 C =10496.366992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.017 4.017 3 Si 1.019 2.981 4 H -0.242 1.242 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.417 4.417 8 H 0.116 0.884 9 O -0.201 6.201 10 C 0.148 3.852 11 C -0.244 4.244 12 C -0.028 4.028 13 C -0.192 4.192 14 C -0.013 4.013 15 C -0.151 4.151 16 C 0.253 3.747 17 N -0.496 5.496 18 C 0.206 3.794 19 C -0.052 4.052 20 C -0.059 4.059 21 C -0.141 4.141 22 C 0.134 3.866 23 O -0.501 6.501 24 C -0.145 4.145 25 C -0.078 4.078 26 N -0.418 5.418 27 O 0.072 5.928 28 H 0.273 0.727 29 H 0.136 0.864 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.417 0.583 36 H 0.157 0.843 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 -16.072 -0.392 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.165 1.165 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.493 4.493 8 H 0.133 0.867 9 O -0.103 6.103 10 C 0.093 3.907 11 C -0.263 4.263 12 C -0.046 4.046 13 C -0.210 4.210 14 C -0.033 4.033 15 C -0.155 4.155 16 C 0.040 3.960 17 N -0.232 5.232 18 C -0.065 4.065 19 C -0.054 4.054 20 C -0.079 4.079 21 C -0.159 4.159 22 C 0.088 3.912 23 O -0.315 6.315 24 C -0.164 4.164 25 C -0.098 4.098 26 N -0.131 5.131 27 O 0.018 5.982 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.278 0.722 36 H 0.174 0.826 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.852 -15.685 0.162 15.943 hybrid contribution 0.063 1.465 -0.561 1.570 sum -2.789 -14.220 -0.399 14.497 Atomic orbital electron populations 1.70250 1.08207 1.28875 1.46429 1.26667 0.96711 1.02921 0.95381 0.84520 0.78731 0.74648 0.78282 1.16521 1.19692 1.19769 1.22048 0.92994 0.80757 1.53457 0.86711 1.83986 1.36033 1.12603 1.77688 1.19904 0.92193 0.86571 0.92063 1.21310 0.91572 1.01402 1.12033 1.21551 1.01245 0.90820 0.91021 1.21186 0.92883 0.99122 1.07803 1.21093 0.94297 0.95184 0.92719 1.16811 0.82706 0.93824 1.22208 1.26599 0.95641 0.80657 0.93120 1.72118 1.00223 1.25871 1.24959 1.24398 0.93425 0.88527 1.00101 1.17606 0.87550 0.92565 1.07672 1.21189 1.00619 0.90515 0.95573 1.21600 0.90498 1.01940 1.01883 1.18643 0.86794 0.89149 0.96603 1.84737 1.42519 1.67352 1.36929 1.21507 0.99292 0.93357 1.02212 1.21108 0.90908 1.00568 0.97241 1.74861 1.00145 1.14220 1.23885 1.85629 1.10733 1.35825 1.65998 0.91823 0.84620 0.81882 0.81490 0.83426 0.83849 0.81660 0.72190 0.82580 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.80 13.67 21.62 0.30 -54.50 16 2 C -0.02 -0.91 5.49 84.84 0.47 -0.45 16 3 Si 1.02 41.18 29.55 68.60 2.03 43.21 16 4 H -0.24 -8.74 7.11 99.48 0.71 -8.03 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.42 -22.90 9.49 67.93 0.64 -22.26 16 8 H 0.12 5.56 5.21 -2.91 -0.02 5.55 16 9 O -0.20 -11.52 8.20 -2.95 -0.02 -11.54 16 10 C 0.15 7.00 6.66 22.89 0.15 7.15 16 11 C -0.24 -9.29 9.16 22.36 0.20 -9.08 16 12 C -0.03 -0.77 10.03 22.30 0.22 -0.55 16 13 C -0.19 -4.95 10.03 22.25 0.22 -4.72 16 14 C -0.01 -0.44 9.70 22.51 0.22 -0.22 16 15 C -0.15 -6.49 5.89 -19.99 -0.12 -6.61 16 16 C 0.25 11.91 7.95 87.21 0.69 12.60 16 17 N -0.50 -20.88 10.95 -302.18 -3.31 -24.19 16 18 C 0.21 8.71 7.79 137.33 1.07 9.78 16 19 C -0.05 -1.72 5.88 -20.03 -0.12 -1.84 16 20 C -0.06 -1.53 9.69 22.46 0.22 -1.31 16 21 C -0.14 -2.75 9.97 22.33 0.22 -2.52 16 22 C 0.13 2.57 6.71 22.57 0.15 2.73 16 23 O -0.50 -7.20 13.49 -91.59 -1.24 -8.44 16 24 C -0.15 -3.20 9.97 22.34 0.22 -2.98 16 25 C -0.08 -2.30 9.68 22.46 0.22 -2.08 16 26 N -0.42 -20.64 11.83 -57.56 -0.68 -21.32 16 27 O 0.07 3.89 9.98 86.96 0.87 4.76 16 28 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.14 5.10 5.64 -2.91 -0.02 5.08 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.15 4.18 7.87 -2.91 -0.02 4.16 16 33 H 0.14 3.55 7.87 -2.91 -0.02 3.53 16 34 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.42 1.61 9.06 -74.06 -0.67 0.94 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 3.87 7.86 -2.91 -0.02 3.85 16 Total: -1.00 -77.35 337.13 3.12 -74.23 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.48 Total: 20.17 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 4.69 Total: -22.37 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -3.69 Total: -100.02 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.39 Total: -15.22 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -77.35 3.12 -74.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794664341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.531 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds