Wall clock time and date at job start Tue Mar 31 2020 14:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35632 * 117.00028 * 2 1 4 4 C 1.40235 * 120.15572 * 270.25150 * 3 2 1 5 5 C 1.47397 * 120.19613 * 359.97438 * 4 3 2 6 6 O 1.21510 * 120.00373 * 0.27434 * 5 4 3 7 7 O 1.34759 * 119.99953 * 180.27513 * 5 4 3 8 8 C 1.45191 * 116.99904 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47116 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99725 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00153 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99840 * 0.02562 * 12 11 9 14 14 C 1.38945 * 119.99813 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99799 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47124 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47229 * 119.99787 * 16 14 12 19 19 H 1.48495 * 109.47354 * 239.99974 * 16 14 12 20 20 C 1.39732 * 119.60297 * 180.25358 * 4 3 2 21 21 C 1.37801 * 119.90637 * 359.74793 * 20 4 3 22 22 C 1.38528 * 120.30584 * 359.97438 * 21 20 4 23 23 C 1.38096 * 120.40193 * 0.02562 * 22 21 20 24 24 N 1.48020 * 119.95464 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99894 * 359.97438 * 24 23 22 26 26 O 1.21799 * 119.99903 * 179.72330 * 24 23 22 27 27 H 1.08996 * 109.46849 * 300.00125 * 1 2 3 28 28 H 1.09006 * 109.46743 * 59.99947 * 1 2 3 29 29 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47570 * 300.00071 * 8 7 5 31 31 H 1.09007 * 109.47185 * 60.00223 * 8 7 5 32 32 H 0.96995 * 119.99701 * 359.97438 * 11 9 8 33 33 H 0.97006 * 119.99526 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.04641 * 179.76949 * 20 4 3 35 35 H 1.07999 * 119.85077 * 179.97438 * 21 20 4 36 36 H 1.07999 * 119.79960 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 2.3600 1.8386 -1.2126 5 6 2.0244 1.1912 -2.4935 6 8 1.4687 0.1107 -2.5011 7 8 2.3340 1.7977 -3.6564 8 6 1.9743 1.1019 -4.8789 9 6 2.3950 1.9261 -6.0684 10 8 2.9436 2.9950 -5.9021 11 7 2.1608 1.4759 -7.3170 12 6 2.5430 2.2259 -8.3991 13 1 3.0322 3.1774 -8.2510 14 6 2.3020 1.7615 -9.6863 15 7 1.7082 0.6032 -9.8665 16 14 2.8235 2.7832 -11.1607 17 1 3.4683 4.0360 -10.6917 18 1 3.7874 2.0090 -11.9834 19 1 1.6300 3.1164 -11.9791 20 6 2.9991 3.0811 -1.1991 21 6 3.3105 3.6806 0.0020 22 6 2.9923 3.0574 1.1975 23 6 2.3606 1.8294 1.1990 24 7 2.0257 1.1721 2.4823 25 8 2.3077 1.7141 3.5360 26 8 1.4640 0.0913 2.4846 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4785 0.1360 -4.9091 31 1 0.8953 0.9495 -4.9063 32 1 1.7218 0.6212 -7.4500 33 1 1.5396 0.2792 -10.7652 34 1 3.2485 3.5710 -2.1288 35 1 3.8049 4.6407 0.0113 36 1 3.2398 3.5348 2.1341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796308875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:07 Heat of formation + Delta-G solvation = -120.022635 kcal Electronic energy + Delta-G solvation = -26620.041636 eV Core-core repulsion = 22267.224619 eV Total energy + Delta-G solvation = -4352.817017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53364 -41.05538 -39.70984 -38.18032 -38.11746 -36.67876 -36.19994 -34.10386 -32.76637 -31.49414 -31.37883 -28.64165 -27.55714 -26.64739 -25.19816 -24.25785 -22.77103 -21.49522 -19.73285 -19.70211 -18.91355 -18.26951 -18.09920 -17.83930 -17.46234 -16.90782 -16.62256 -16.27485 -15.97669 -15.70546 -15.45727 -14.67915 -14.36875 -14.15809 -14.09012 -13.50709 -13.28078 -12.96990 -12.87395 -12.44644 -12.19185 -11.97451 -11.79651 -11.70163 -11.45446 -11.33033 -11.22224 -10.77351 -10.60316 -10.46142 -10.42622 -10.37102 -10.18373 -9.70613 -9.68010 -8.64578 -8.17665 -6.58374 -4.00829 -0.58077 -0.10160 0.91139 1.01500 2.08142 2.32983 2.74985 3.05324 3.10071 3.18537 3.25162 3.62912 3.85045 3.99345 4.08081 4.20737 4.32180 4.43232 4.66441 4.89805 4.95713 5.03699 5.06273 5.15314 5.32841 5.37108 5.44353 5.47411 5.56198 5.65714 5.92503 6.04840 6.33824 6.77958 7.39183 7.39892 7.56830 7.85020 8.38153 8.98163 9.29478 9.78290 10.58678 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.002418 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.924694 B =11575.788943 C =12365.603457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.304 6.304 3 C 0.228 3.772 4 C -0.145 4.145 5 C 0.504 3.496 6 O -0.482 6.482 7 O -0.320 6.320 8 C 0.063 3.937 9 C 0.437 3.563 10 O -0.578 6.578 11 N -0.550 5.550 12 C -0.303 4.303 13 H 0.107 0.893 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.006 3.994 21 C -0.136 4.136 22 C -0.013 4.013 23 C -0.088 4.088 24 N 0.034 4.966 25 O -0.169 6.169 26 O -0.135 6.135 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 2.857 19.645 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.219 6.219 3 C 0.181 3.819 4 C -0.148 4.148 5 C 0.347 3.653 6 O -0.371 6.371 7 O -0.235 6.235 8 C -0.014 4.014 9 C 0.222 3.778 10 O -0.462 6.462 11 N -0.187 5.187 12 C -0.432 4.432 13 H 0.125 0.875 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.012 4.012 21 C -0.155 4.155 22 C -0.032 4.032 23 C -0.172 4.172 24 N 0.554 4.446 25 O -0.381 6.381 26 O -0.356 6.356 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.429 3.294 18.925 19.214 hybrid contribution -0.282 -0.346 -0.605 0.752 sum -0.711 2.948 18.320 18.570 Atomic orbital electron populations 1.22987 0.75587 1.04964 1.00141 1.85999 1.21648 1.20678 1.93621 1.18346 0.90469 0.84475 0.88616 1.19518 1.07850 0.97008 0.90382 1.20488 0.76895 0.83538 0.84407 1.90904 1.38084 1.20125 1.87945 1.86553 1.74219 1.49059 1.13662 1.22830 1.01645 0.95850 0.81103 1.19243 0.86816 0.88252 0.83521 1.90554 1.47101 1.23421 1.85164 1.41709 1.52295 1.21102 1.03578 1.19772 1.36573 1.03709 0.83187 0.87504 1.25332 0.96686 0.96527 0.99177 1.69619 1.41326 1.18857 1.23731 0.85736 0.78339 0.79628 0.80272 1.19063 1.20556 1.20560 1.22140 0.87195 0.90993 1.00846 1.21294 1.02086 1.01995 0.90111 1.21307 0.90131 0.90219 1.01574 1.21468 1.14303 0.97929 0.83505 1.43277 0.98654 1.00606 1.02077 1.94536 1.57572 1.66722 1.19255 1.94603 1.39884 1.06993 1.94084 0.93583 0.92919 0.87251 0.89188 0.89279 0.77105 0.91569 0.81214 0.82114 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 9.80 101.05 0.99 1.59 16 2 O -0.30 -4.11 7.25 -49.62 -0.36 -4.47 16 3 C 0.23 2.79 5.72 -38.67 -0.22 2.57 16 4 C -0.15 -1.74 5.89 -104.86 -0.62 -2.35 16 5 C 0.50 7.51 7.89 34.46 0.27 7.78 16 6 O -0.48 -7.92 13.77 -26.59 -0.37 -8.29 16 7 O -0.32 -5.36 9.01 -47.33 -0.43 -5.79 16 8 C 0.06 1.11 5.95 36.01 0.21 1.32 16 9 C 0.44 9.90 7.86 -10.98 -0.09 9.81 16 10 O -0.58 -15.03 16.08 -14.11 -0.23 -15.26 16 11 N -0.55 -13.28 5.29 -10.96 -0.06 -13.34 16 12 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 13 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 14 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -23.35 13.05 55.50 0.72 -22.62 16 16 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 C 0.01 0.06 9.61 -39.18 -0.38 -0.32 16 21 C -0.14 -0.85 10.02 -39.63 -0.40 -1.25 16 22 C -0.01 -0.10 9.54 -39.53 -0.38 -0.48 16 23 C -0.09 -0.95 6.86 -79.84 -0.55 -1.50 16 24 N 0.03 0.42 4.45 34.02 0.15 0.57 16 25 O -0.17 -2.09 18.44 -29.46 -0.54 -2.63 16 26 O -0.13 -1.84 16.02 -36.49 -0.58 -2.42 16 27 H 0.05 0.44 7.46 -51.93 -0.39 0.06 16 28 H 0.05 0.57 7.47 -51.93 -0.39 0.18 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.40 9.06 7.90 -40.82 -0.32 8.74 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.17 1.48 7.61 -52.48 -0.40 1.08 16 35 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.16 0.83 7.59 -52.49 -0.40 0.44 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -32.73 334.53 -6.16 -38.88 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.10 Total: 5.76 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.39 Total: 9.53 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.82 Total: -35.39 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.51 Total: -38.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.73 -6.16 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796308875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.141 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds