Wall clock time and date at job start Tue Mar 31 2020 14:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35632 * 117.00028 * 2 1 4 4 C 1.40235 * 120.15572 * 270.25150 * 3 2 1 5 5 C 1.47397 * 120.19613 * 359.97438 * 4 3 2 6 6 O 1.21510 * 120.00373 * 0.27434 * 5 4 3 7 7 O 1.34759 * 119.99953 * 180.27513 * 5 4 3 8 8 C 1.45191 * 116.99904 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47116 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99725 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00153 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.08005 * 119.99840 * 0.02562 * 12 11 9 14 14 C 1.38945 * 119.99813 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99799 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47124 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47229 * 119.99787 * 16 14 12 19 19 H 1.48495 * 109.47354 * 239.99974 * 16 14 12 20 20 C 1.39732 * 119.60297 * 180.25358 * 4 3 2 21 21 C 1.37801 * 119.90637 * 359.74793 * 20 4 3 22 22 C 1.38528 * 120.30584 * 359.97438 * 21 20 4 23 23 C 1.38096 * 120.40193 * 0.02562 * 22 21 20 24 24 N 1.48020 * 119.95464 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99894 * 359.97438 * 24 23 22 26 26 O 1.21799 * 119.99903 * 179.72330 * 24 23 22 27 27 H 1.08996 * 109.46849 * 300.00125 * 1 2 3 28 28 H 1.09006 * 109.46743 * 59.99947 * 1 2 3 29 29 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47570 * 300.00071 * 8 7 5 31 31 H 1.09007 * 109.47185 * 60.00223 * 8 7 5 32 32 H 0.96995 * 119.99701 * 359.97438 * 11 9 8 33 33 H 0.97006 * 119.99526 * 179.97438 * 15 14 12 34 34 H 1.08004 * 120.04641 * 179.76949 * 20 4 3 35 35 H 1.07999 * 119.85077 * 179.97438 * 21 20 4 36 36 H 1.07999 * 119.79960 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 2.3600 1.8386 -1.2126 5 6 2.0244 1.1912 -2.4935 6 8 1.4687 0.1107 -2.5011 7 8 2.3340 1.7977 -3.6564 8 6 1.9743 1.1019 -4.8789 9 6 2.3950 1.9261 -6.0684 10 8 2.9436 2.9950 -5.9021 11 7 2.1608 1.4759 -7.3170 12 6 2.5430 2.2259 -8.3991 13 1 3.0322 3.1774 -8.2510 14 6 2.3020 1.7615 -9.6863 15 7 1.7082 0.6032 -9.8665 16 14 2.8235 2.7832 -11.1607 17 1 3.4683 4.0360 -10.6917 18 1 3.7874 2.0090 -11.9834 19 1 1.6300 3.1164 -11.9791 20 6 2.9991 3.0811 -1.1991 21 6 3.3105 3.6806 0.0020 22 6 2.9923 3.0574 1.1975 23 6 2.3606 1.8294 1.1990 24 7 2.0257 1.1721 2.4823 25 8 2.3077 1.7141 3.5360 26 8 1.4640 0.0913 2.4846 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.4785 0.1360 -4.9091 31 1 0.8953 0.9495 -4.9063 32 1 1.7218 0.6212 -7.4500 33 1 1.5396 0.2792 -10.7652 34 1 3.2485 3.5710 -2.1288 35 1 3.8049 4.6407 0.0113 36 1 3.2398 3.5348 2.1341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796308875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:06 Heat of formation + Delta-G solvation = -139.618729 kcal Electronic energy + Delta-G solvation = -26620.891386 eV Core-core repulsion = 22267.224619 eV Total energy + Delta-G solvation = -4353.666767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.42749 -42.10291 -40.84377 -39.91621 -38.92603 -37.63457 -37.48828 -36.04389 -33.62486 -33.40040 -32.16767 -30.13659 -28.45418 -27.49231 -26.80186 -25.49525 -23.57647 -22.51856 -21.46897 -20.69590 -20.09707 -19.83874 -19.03934 -18.74511 -18.57157 -18.11539 -17.87522 -17.31781 -17.26115 -16.88269 -16.51869 -16.16688 -15.81615 -15.74987 -15.10621 -14.85426 -14.23778 -14.06985 -13.82482 -13.59495 -13.57087 -13.53188 -12.95667 -12.84442 -12.75119 -12.47219 -12.36898 -12.27072 -12.11110 -11.96861 -11.88346 -11.59379 -11.34491 -10.97297 -10.53568 -10.40741 -10.13105 -8.53617 -6.04126 -1.40459 -0.91982 0.06434 0.16766 1.11090 1.13755 1.34103 1.43953 1.57924 1.84937 1.92930 2.26485 2.28657 2.84719 3.12359 3.20585 3.30430 3.42537 3.67117 3.70429 3.86781 4.08859 4.11450 4.15410 4.19027 4.25771 4.43373 4.62104 4.72609 4.78131 5.02136 5.08362 5.20709 5.36567 5.87484 5.92840 6.36336 6.43184 6.48542 7.01638 7.38424 7.90643 8.63534 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031995 B = 0.002418 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.924694 B =11575.788943 C =12365.603457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.328 6.328 3 C 0.214 3.786 4 C -0.165 4.165 5 C 0.506 3.494 6 O -0.504 6.504 7 O -0.331 6.331 8 C 0.073 3.927 9 C 0.439 3.561 10 O -0.614 6.614 11 N -0.558 5.558 12 C -0.335 4.335 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.012 3.988 21 C -0.110 4.110 22 C 0.006 3.994 23 C -0.100 4.100 24 N 0.034 4.966 25 O -0.153 6.153 26 O -0.180 6.180 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.400 0.600 33 H 0.280 0.720 34 H 0.173 0.827 35 H 0.208 0.792 36 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 4.578 20.389 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.244 6.244 3 C 0.166 3.834 4 C -0.167 4.167 5 C 0.350 3.650 6 O -0.393 6.393 7 O -0.246 6.246 8 C -0.004 4.004 9 C 0.225 3.775 10 O -0.501 6.501 11 N -0.195 5.195 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.193 1.193 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.006 4.006 21 C -0.127 4.127 22 C -0.013 4.013 23 C -0.184 4.184 24 N 0.551 4.449 25 O -0.371 6.371 26 O -0.391 6.391 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.191 0.809 35 H 0.225 0.775 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 0.317 4.920 19.655 20.263 hybrid contribution -0.475 -0.771 -0.718 1.156 sum -0.159 4.149 18.936 19.386 Atomic orbital electron populations 1.23059 0.74842 1.05650 1.00127 1.85952 1.22669 1.21983 1.93805 1.18491 0.91082 0.84481 0.89297 1.19392 1.10246 0.98491 0.88583 1.20962 0.76128 0.83349 0.84546 1.90888 1.39201 1.21124 1.88085 1.86540 1.74719 1.49434 1.13895 1.22575 1.02860 0.95068 0.79858 1.19988 0.85195 0.87961 0.84317 1.90519 1.48413 1.25202 1.85919 1.41752 1.52697 1.21201 1.03899 1.19757 1.38170 1.03825 0.84654 0.89522 1.26128 0.96183 0.97517 1.01212 1.69679 1.41490 1.19742 1.24698 0.84805 0.78261 0.78001 0.76891 1.19334 1.19645 1.19570 1.22315 0.86282 0.89674 1.02377 1.21760 1.00022 1.02825 0.88134 1.21803 0.87681 0.88376 1.03439 1.21620 1.15691 0.99050 0.82054 1.43505 0.98274 1.00472 1.02628 1.94497 1.56433 1.66237 1.19921 1.94617 1.41950 1.08098 1.94401 0.92903 0.93447 0.86359 0.87543 0.87280 0.76601 0.91001 0.80927 0.77510 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 9.80 113.37 1.11 2.35 16 2 O -0.33 -9.09 7.25 -59.79 -0.43 -9.52 16 3 C 0.21 5.12 5.72 22.86 0.13 5.25 16 4 C -0.16 -3.81 5.89 -20.02 -0.12 -3.92 16 5 C 0.51 15.02 7.89 70.23 0.55 15.58 16 6 O -0.50 -16.73 13.77 26.80 0.37 -16.36 16 7 O -0.33 -10.97 9.01 -50.31 -0.45 -11.43 16 8 C 0.07 2.56 5.95 71.24 0.42 2.99 16 9 C 0.44 20.09 7.86 87.66 0.69 20.78 16 10 O -0.61 -32.41 16.08 15.73 0.25 -32.16 16 11 N -0.56 -27.38 5.29 -306.98 -1.62 -29.00 16 12 C -0.34 -18.10 9.68 84.04 0.81 -17.28 16 13 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 15 N -0.92 -47.55 13.05 21.66 0.28 -47.26 16 16 Si 1.00 40.75 29.55 68.60 2.03 42.78 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 20 C 0.01 0.18 9.61 22.53 0.22 0.40 16 21 C -0.11 -0.87 10.02 22.24 0.22 -0.65 16 22 C 0.01 0.06 9.54 22.31 0.21 0.27 16 23 C -0.10 -1.98 6.86 36.44 0.25 -1.73 16 24 N 0.03 0.83 4.45 -46.30 -0.21 0.62 16 25 O -0.15 -3.46 18.44 18.88 0.35 -3.11 16 26 O -0.18 -5.01 16.02 25.61 0.41 -4.60 16 27 H 0.05 1.06 7.46 -2.39 -0.02 1.04 16 28 H 0.05 1.06 7.47 -2.38 -0.02 1.05 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 32 H 0.40 18.57 7.90 -92.71 -0.73 17.84 16 33 H 0.28 13.57 8.31 -92.70 -0.77 12.80 16 34 H 0.17 2.63 7.61 -2.91 -0.02 2.60 16 35 H 0.21 -0.15 8.06 -2.91 -0.02 -0.17 16 36 H 0.20 0.94 7.59 -2.91 -0.02 0.92 16 Total: -1.00 -72.62 334.53 6.39 -66.23 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.44 Total: 19.82 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 4.97 Total: 24.00 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.55 Total: -75.64 kcal Atomic # 8 Polarization: -77.68 SS G_CDS: 0.49 Total: -77.19 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -72.62 6.39 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796308875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.384 kcal (2) G-P(sol) polarization free energy of solvation -72.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds