Wall clock time and date at job start Tue Mar 31 2020 13:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46676 * 240.00674 * 2 1 3 5 5 C 1.50691 * 109.47350 * 120.00445 * 2 1 3 6 6 C 1.33639 * 126.03915 * 59.99997 * 5 2 1 7 7 N 1.31784 * 114.50230 * 179.97438 * 6 5 2 8 8 C 1.29023 * 117.12236 * 0.02562 * 7 6 5 9 9 C 1.50709 * 124.91372 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46610 * 180.02562 * 9 8 7 11 11 C 1.47196 * 109.47060 * 60.02469 * 9 8 7 12 12 N 6.91621 * 124.92074 * 130.37755 * 2 1 3 13 13 C 1.50695 * 109.46992 * 300.01692 * 9 8 7 14 14 O 1.20762 * 120.00028 * 30.00730 * 13 9 8 15 15 C 1.50695 * 120.00176 * 209.99979 * 13 9 8 16 16 S 1.81003 * 109.47293 * 180.02562 * 15 13 9 17 17 C 1.76207 * 100.00032 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99721 * 0.02562 * 17 16 15 19 19 C 1.38790 * 119.99831 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00058 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47115 * 90.00071 * 21 19 17 23 23 H 1.48502 * 109.46704 * 209.99941 * 21 19 17 24 24 H 1.48492 * 109.46846 * 329.99968 * 21 19 17 25 25 S 1.70979 * 110.17115 * 359.97438 * 8 7 6 26 26 H 1.09007 * 109.46695 * 299.99513 * 1 2 3 27 27 H 1.09001 * 109.47400 * 59.99404 * 1 2 3 28 28 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46896 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47546 * 300.00506 * 3 2 1 31 31 H 1.08998 * 109.47161 * 60.00962 * 3 2 1 32 32 H 1.09005 * 109.46595 * 299.99512 * 4 2 1 33 33 H 1.08999 * 109.47522 * 59.99367 * 4 2 1 34 34 H 1.08999 * 109.47072 * 179.97438 * 4 2 1 35 35 H 1.07999 * 122.75182 * 359.92431 * 6 5 2 36 36 H 1.09008 * 109.47328 * 300.00267 * 15 13 9 37 37 H 1.08996 * 109.47206 * 60.00159 * 15 13 9 38 38 H 0.97004 * 120.00503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7104 1.2303 6 6 1.7851 -1.9816 1.5602 7 7 2.3402 -2.3709 2.6903 8 6 3.0416 -1.4987 3.3322 9 6 3.7508 -1.7535 4.6373 10 1 4.2651 -0.8463 4.9544 11 6 4.7314 -2.8368 4.4595 12 7 5.4891 -3.6737 4.3201 13 6 2.7450 -2.1533 5.6858 14 8 1.7384 -2.7383 5.3650 15 6 2.9953 -1.8232 7.1347 16 16 1.6170 -2.4302 8.1387 17 6 2.1566 -1.9232 9.7377 18 1 3.0955 -1.4015 9.8505 19 6 1.3750 -2.1944 10.8521 20 7 1.7779 -1.8152 12.0465 21 14 -0.2486 -3.0974 10.6570 22 1 -0.0183 -4.5600 10.7710 23 1 -1.1889 -2.6601 11.7199 24 1 -0.8290 -2.7899 9.3253 25 16 3.0499 -0.0119 2.4878 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6765 -1.7489 -1.2494 33 1 1.6765 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2497 35 1 1.1792 -2.6361 0.9512 36 1 3.9198 -2.2995 7.4615 37 1 3.0822 -0.7430 7.2515 38 1 1.2318 -2.0050 12.8255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797570405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:39 Heat of formation + Delta-G solvation = 27.025640 kcal Electronic energy + Delta-G solvation = -21584.326934 eV Core-core repulsion = 18259.225246 eV Total energy + Delta-G solvation = -3325.101688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52673 -39.29308 -37.35244 -36.58103 -32.85116 -32.49207 -30.01984 -28.29534 -27.77346 -27.67887 -25.69072 -24.81431 -21.57892 -20.84131 -19.68946 -18.32049 -17.82550 -17.37616 -16.30174 -15.78919 -15.32798 -15.04338 -14.98751 -14.62034 -14.33471 -14.26692 -14.09652 -13.84662 -13.73483 -13.06014 -12.91127 -12.76288 -12.71497 -12.68571 -12.23413 -12.15517 -12.12836 -11.99125 -11.73425 -11.47835 -11.32098 -11.07980 -11.05778 -10.74875 -9.95292 -9.88496 -9.58745 -9.48306 -9.05918 -9.01257 -8.62321 -7.02858 -6.33977 -4.07989 0.34827 0.94734 1.40895 1.78409 2.40346 2.49459 2.71210 2.80621 3.29229 3.41852 3.45390 3.65022 3.74486 4.00301 4.14490 4.27984 4.36797 4.47918 4.48300 4.73076 4.84500 4.90983 5.05094 5.10016 5.18876 5.29229 5.31803 5.36808 5.43640 5.47277 5.53387 5.61390 5.67486 5.83905 5.86895 5.90155 5.91031 7.25148 7.46188 7.53307 7.88963 8.36962 9.11672 10.75022 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002969 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.963803 B = 9428.420605 C =10044.309012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.201 4.201 6 C 0.039 3.961 7 N -0.428 5.428 8 C 0.027 3.973 9 C 0.050 3.950 10 H 0.156 0.844 11 C 0.224 3.776 12 N -0.394 5.394 13 C 0.378 3.622 14 O -0.382 6.382 15 C -0.149 4.149 16 S -0.155 6.155 17 C -0.518 4.518 18 H 0.091 0.909 19 C 0.096 3.904 20 N -0.878 5.878 21 Si 0.855 3.145 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.236 1.236 25 S 0.156 5.844 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.175 0.825 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 8.674 -26.142 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.006 3.994 3 C -0.209 4.209 4 C -0.196 4.196 5 C -0.322 4.322 6 C -0.112 4.112 7 N -0.141 5.141 8 C -0.252 4.252 9 C 0.022 3.978 10 H 0.174 0.826 11 C -0.096 4.096 12 N -0.069 5.069 13 C 0.243 3.757 14 O -0.248 6.248 15 C -0.297 4.297 16 S 0.072 5.928 17 C -0.666 4.666 18 H 0.109 0.891 19 C -0.113 4.113 20 N -0.514 5.514 21 Si 0.680 3.320 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 S 0.414 5.586 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.192 0.808 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.474 6.977 -26.184 27.138 hybrid contribution -0.260 0.025 0.276 0.380 sum 1.214 7.002 -25.908 26.865 Atomic orbital electron populations 1.21922 0.92606 1.02693 1.02455 1.19061 0.96009 0.94561 0.89730 1.22029 1.01487 0.94499 1.02928 1.21912 1.01436 1.00480 0.95726 1.26183 1.05751 0.98329 1.01960 1.21634 1.01955 0.93874 0.93758 1.66169 1.07195 1.34555 1.06148 1.25778 1.03946 0.94560 1.00899 1.17851 0.92497 0.96006 0.91424 0.82638 1.27641 0.93444 0.93933 0.94627 1.81283 1.10385 1.08688 1.06568 1.23644 0.85238 0.77214 0.89586 1.90499 1.25032 1.26869 1.82402 1.23778 1.05899 1.06268 0.93779 1.84799 1.26182 1.77708 1.04081 1.22225 1.10917 1.44046 0.89389 0.89078 1.24713 0.97953 0.94441 0.94147 1.69929 1.38379 1.44886 0.98210 0.86756 0.83718 0.80999 0.80505 1.19186 1.19853 1.15969 1.83812 1.46086 1.14464 1.14197 0.92042 0.91696 0.92017 0.92023 0.91295 0.91831 0.92066 0.91679 0.92289 0.80801 0.87384 0.86982 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.35 37.16 0.31 -0.55 16 2 C 0.01 0.06 0.93 -155.66 -0.14 -0.08 16 3 C -0.15 -0.85 7.59 37.16 0.28 -0.56 16 4 C -0.14 -0.77 8.35 37.16 0.31 -0.46 16 5 C -0.20 -1.83 5.15 -35.92 -0.19 -2.01 16 6 C 0.04 0.44 10.62 -19.18 -0.20 0.24 16 7 N -0.43 -6.05 9.72 -11.86 -0.12 -6.17 16 8 C 0.03 0.33 5.65 -13.45 -0.08 0.25 16 9 C 0.05 0.59 2.94 -95.71 -0.28 0.31 16 10 H 0.16 1.10 8.10 -51.93 -0.42 0.68 16 11 C 0.22 3.13 14.60 -20.71 -0.30 2.83 16 12 N -0.39 -6.33 18.55 42.22 0.78 -5.54 16 13 C 0.38 6.00 6.18 -29.04 -0.18 5.82 16 14 O -0.38 -7.46 15.27 6.00 0.09 -7.37 16 15 C -0.15 -2.59 6.08 36.00 0.22 -2.37 16 16 S -0.16 -3.73 18.55 -107.50 -1.99 -5.72 16 17 C -0.52 -14.39 10.04 30.94 0.31 -14.08 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 19 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -25.96 13.97 55.49 0.78 -25.18 16 21 Si 0.86 21.30 27.74 -169.99 -4.72 16.59 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 25 S 0.16 1.40 21.81 -107.50 -2.34 -0.94 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 29 H 0.06 0.34 8.00 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 8.00 -51.93 -0.42 -0.04 16 32 H 0.06 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.77 8.14 -51.91 -0.42 1.35 16 37 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -34.41 360.03 -7.17 -41.58 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -5.04 Total: -4.67 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -0.04 Total: -8.00 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 1.44 Total: -36.90 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.72 Total: 16.59 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -4.34 Total: -6.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.41 -7.17 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797570405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.609 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds