Wall clock time and date at job start Tue Mar 31 2020 13:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46676 * 240.00674 * 2 1 3 5 5 C 1.50691 * 109.47350 * 120.00445 * 2 1 3 6 6 C 1.33639 * 126.03915 * 59.99997 * 5 2 1 7 7 N 1.31784 * 114.50230 * 179.97438 * 6 5 2 8 8 C 1.29023 * 117.12236 * 0.02562 * 7 6 5 9 9 C 1.50709 * 124.91372 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46610 * 180.02562 * 9 8 7 11 11 C 1.47196 * 109.47060 * 60.02469 * 9 8 7 12 12 N 6.91621 * 124.92074 * 130.37755 * 2 1 3 13 13 C 1.50695 * 109.46992 * 300.01692 * 9 8 7 14 14 O 1.20762 * 120.00028 * 30.00730 * 13 9 8 15 15 C 1.50695 * 120.00176 * 209.99979 * 13 9 8 16 16 S 1.81003 * 109.47293 * 180.02562 * 15 13 9 17 17 C 1.76207 * 100.00032 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99721 * 0.02562 * 17 16 15 19 19 C 1.38790 * 119.99831 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00058 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00204 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47115 * 90.00071 * 21 19 17 23 23 H 1.48502 * 109.46704 * 209.99941 * 21 19 17 24 24 H 1.48492 * 109.46846 * 329.99968 * 21 19 17 25 25 S 1.70979 * 110.17115 * 359.97438 * 8 7 6 26 26 H 1.09007 * 109.46695 * 299.99513 * 1 2 3 27 27 H 1.09001 * 109.47400 * 59.99404 * 1 2 3 28 28 H 1.09005 * 109.47210 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46896 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47546 * 300.00506 * 3 2 1 31 31 H 1.08998 * 109.47161 * 60.00962 * 3 2 1 32 32 H 1.09005 * 109.46595 * 299.99512 * 4 2 1 33 33 H 1.08999 * 109.47522 * 59.99367 * 4 2 1 34 34 H 1.08999 * 109.47072 * 179.97438 * 4 2 1 35 35 H 1.07999 * 122.75182 * 359.92431 * 6 5 2 36 36 H 1.09008 * 109.47328 * 300.00267 * 15 13 9 37 37 H 1.08996 * 109.47206 * 60.00159 * 15 13 9 38 38 H 0.97004 * 120.00503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7104 1.2303 6 6 1.7851 -1.9816 1.5602 7 7 2.3402 -2.3709 2.6903 8 6 3.0416 -1.4987 3.3322 9 6 3.7508 -1.7535 4.6373 10 1 4.2651 -0.8463 4.9544 11 6 4.7314 -2.8368 4.4595 12 7 5.4891 -3.6737 4.3201 13 6 2.7450 -2.1533 5.6858 14 8 1.7384 -2.7383 5.3650 15 6 2.9953 -1.8232 7.1347 16 16 1.6170 -2.4302 8.1387 17 6 2.1566 -1.9232 9.7377 18 1 3.0955 -1.4015 9.8505 19 6 1.3750 -2.1944 10.8521 20 7 1.7779 -1.8152 12.0465 21 14 -0.2486 -3.0974 10.6570 22 1 -0.0183 -4.5600 10.7710 23 1 -1.1889 -2.6601 11.7199 24 1 -0.8290 -2.7899 9.3253 25 16 3.0499 -0.0119 2.4878 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 1.6765 -1.7489 -1.2494 33 1 1.6765 -0.2073 -2.1393 34 1 3.1299 -0.7208 -1.2497 35 1 1.1792 -2.6361 0.9512 36 1 3.9198 -2.2995 7.4615 37 1 3.0822 -0.7430 7.2515 38 1 1.2318 -2.0050 12.8255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797570405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:38 Heat of formation + Delta-G solvation = 5.965805 kcal Electronic energy + Delta-G solvation = -21585.240157 eV Core-core repulsion = 18259.225246 eV Total energy + Delta-G solvation = -3326.014911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51137 -40.37574 -38.11392 -37.60700 -34.66336 -33.91196 -31.24754 -29.17854 -28.24442 -28.12909 -27.84586 -25.67379 -22.44048 -22.01774 -20.47654 -19.81651 -19.00087 -18.55584 -17.25782 -17.16639 -16.83468 -16.30010 -15.97328 -15.80070 -15.43015 -15.28893 -14.90129 -14.84538 -14.71676 -14.66035 -14.18877 -13.98886 -13.56305 -13.35695 -13.25803 -13.14493 -13.13853 -13.02832 -12.69459 -12.62679 -12.57532 -12.28911 -11.96040 -11.86364 -11.61301 -11.17162 -11.09733 -10.56755 -10.51156 -10.22929 -9.81861 -9.01386 -8.50632 -6.21826 -0.45754 0.17692 0.52466 0.64731 0.98782 1.31220 1.35659 1.42911 1.48024 1.64304 1.80925 2.23983 2.51078 2.67960 2.86362 2.88045 2.93153 3.55942 3.66085 3.88395 4.01479 4.07998 4.12223 4.26737 4.33570 4.52112 4.54221 4.77602 4.78876 4.87866 5.01256 5.01764 5.02387 5.14441 5.29405 5.40315 5.40752 5.72407 6.14422 6.15164 6.22397 6.73222 6.94986 8.61407 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002969 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.963803 B = 9428.420605 C =10044.309012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.008 3.992 3 C -0.153 4.153 4 C -0.136 4.136 5 C -0.192 4.192 6 C 0.015 3.985 7 N -0.469 5.469 8 C -0.010 4.010 9 C 0.061 3.939 10 H 0.210 0.790 11 C 0.242 3.758 12 N -0.435 5.435 13 C 0.389 3.611 14 O -0.422 6.422 15 C -0.139 4.139 16 S -0.196 6.196 17 C -0.520 4.520 18 H 0.069 0.931 19 C 0.046 3.954 20 N -0.916 5.916 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.260 1.260 24 H -0.234 1.234 25 S 0.224 5.776 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.181 0.819 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 10.441 -28.335 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 C -0.211 4.211 4 C -0.194 4.194 5 C -0.314 4.314 6 C -0.136 4.136 7 N -0.183 5.183 8 C -0.287 4.287 9 C 0.034 3.966 10 H 0.227 0.773 11 C -0.077 4.077 12 N -0.111 5.111 13 C 0.256 3.744 14 O -0.291 6.291 15 C -0.287 4.287 16 S 0.032 5.968 17 C -0.668 4.668 18 H 0.087 0.913 19 C -0.160 4.160 20 N -0.554 5.554 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.185 1.185 24 H -0.158 1.158 25 S 0.482 5.518 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.198 0.802 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.497 8.753 -28.370 29.728 hybrid contribution -0.195 -0.427 0.801 0.929 sum 1.303 8.326 -27.569 28.828 Atomic orbital electron populations 1.21928 0.92246 1.02560 1.02897 1.19214 0.96245 0.95117 0.88905 1.22060 1.01659 0.93637 1.03713 1.21909 1.01214 1.00421 0.95856 1.26651 1.04328 0.97858 1.02543 1.21763 1.03044 0.95061 0.93718 1.66137 1.08233 1.36535 1.07433 1.25811 1.04987 0.96403 1.01454 1.17953 0.91019 0.97196 0.90405 0.77289 1.27951 0.92870 0.93512 0.93400 1.81299 1.12074 1.09755 1.07929 1.23762 0.85315 0.75813 0.89481 1.90503 1.27055 1.28631 1.82863 1.23921 1.03088 1.08150 0.93560 1.84749 1.30268 1.78538 1.03238 1.22387 1.09949 1.43025 0.91435 0.91282 1.25530 1.01056 0.95343 0.94044 1.70008 1.39917 1.46444 0.99036 0.85926 0.80392 0.79673 0.80750 1.19252 1.18477 1.15826 1.83495 1.44553 1.11304 1.12478 0.92957 0.89884 0.92511 0.91772 0.89628 0.92054 0.92468 0.89952 0.92612 0.80240 0.86029 0.83758 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.35 71.98 0.60 -0.83 16 2 C 0.01 0.09 0.93 -52.93 -0.05 0.04 16 3 C -0.15 -1.23 7.59 71.98 0.55 -0.68 16 4 C -0.14 -1.22 8.35 71.98 0.60 -0.62 16 5 C -0.19 -3.14 5.15 24.64 0.13 -3.01 16 6 C 0.02 0.33 10.62 83.66 0.89 1.22 16 7 N -0.47 -13.00 9.72 -191.44 -1.86 -14.86 16 8 C -0.01 -0.22 5.65 88.52 0.50 0.28 16 9 C 0.06 1.31 2.94 -14.09 -0.04 1.27 16 10 H 0.21 2.04 8.10 -2.39 -0.02 2.02 16 11 C 0.24 6.44 14.60 89.42 1.31 7.75 16 12 N -0.43 -13.69 18.55 20.02 0.37 -13.32 16 13 C 0.39 11.71 6.18 29.10 0.18 11.89 16 14 O -0.42 -16.31 15.27 -1.46 -0.02 -16.33 16 15 C -0.14 -4.57 6.08 71.23 0.43 -4.14 16 16 S -0.20 -9.31 18.55 -56.49 -1.05 -10.36 16 17 C -0.52 -29.04 10.04 67.95 0.68 -28.36 16 18 H 0.07 4.03 8.03 -2.91 -0.02 4.00 16 19 C 0.05 2.62 5.50 84.86 0.47 3.09 16 20 N -0.92 -54.77 13.97 21.65 0.30 -54.47 16 21 Si 0.91 44.18 27.74 68.60 1.90 46.08 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.23 -11.24 6.74 99.48 0.67 -10.57 16 25 S 0.22 3.38 21.81 -56.49 -1.23 2.15 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.64 8.00 -2.38 -0.02 0.62 16 29 H 0.06 0.49 8.00 -2.39 -0.02 0.47 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.53 8.00 -2.39 -0.02 0.51 16 32 H 0.06 0.57 8.00 -2.38 -0.02 0.55 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.14 3.85 8.14 -2.40 -0.02 3.83 16 38 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.63 360.03 5.69 -70.94 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: 1.03 Total: 2.26 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 6.24 Total: -12.09 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.19 Total: -82.66 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.02 Total: -16.33 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -2.28 Total: -8.21 kcal Total: -76.63 5.69 -70.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797570405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.910 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds