Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47196 * 2 1 4 4 C 1.52992 * 109.47154 * 239.99695 * 2 1 3 5 5 C 1.50701 * 109.46963 * 119.99962 * 2 1 3 6 6 C 1.33638 * 126.03653 * 59.98371 * 5 2 1 7 7 N 1.31789 * 114.49499 * 179.78974 * 6 5 2 8 8 C 1.29026 * 117.12673 * 0.47442 * 7 6 5 9 9 C 1.50699 * 124.91664 * 179.81461 * 8 7 6 10 10 H 1.08996 * 109.47258 * 179.69055 * 9 8 7 11 11 C 1.47206 * 109.46910 * 299.69307 * 9 8 7 12 12 N 6.91665 * 93.95967 * 110.73031 * 2 1 3 13 13 C 1.50703 * 109.47227 * 59.69296 * 9 8 7 14 14 O 1.20760 * 119.99731 * 335.00244 * 13 9 8 15 15 C 1.50693 * 120.00055 * 155.00010 * 13 9 8 16 16 S 1.81000 * 109.47119 * 180.02562 * 15 13 9 17 17 C 1.76200 * 99.99950 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00248 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00160 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99684 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00212 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47023 * 119.99955 * 21 19 17 24 24 H 1.48502 * 109.47061 * 240.00153 * 21 19 17 25 25 S 1.70976 * 110.16779 * 359.54655 * 8 7 6 26 26 H 1.08998 * 109.46757 * 299.99905 * 1 2 3 27 27 H 1.08999 * 109.46890 * 59.99955 * 1 2 3 28 28 H 1.09001 * 109.46707 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47338 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46985 * 299.99996 * 3 2 1 31 31 H 1.09002 * 109.47490 * 59.99680 * 3 2 1 32 32 H 1.09003 * 109.47484 * 300.00198 * 4 2 1 33 33 H 1.09007 * 109.46929 * 60.00064 * 4 2 1 34 34 H 1.09004 * 109.47341 * 180.02562 * 4 2 1 35 35 H 1.07993 * 122.75330 * 0.03487 * 6 5 2 36 36 H 1.08996 * 109.47167 * 300.00053 * 15 13 9 37 37 H 1.09007 * 109.47118 * 60.00066 * 15 13 9 38 38 H 0.96999 * 119.99652 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0324 -0.7104 1.2305 6 6 1.7848 -1.9815 1.5606 7 7 2.3431 -2.3717 2.6888 8 6 3.0401 -1.4979 3.3334 9 6 3.7490 -1.7525 4.6386 10 1 4.2640 -0.8456 4.9553 11 6 2.7661 -2.1419 5.6629 12 7 2.0077 -2.4424 6.4534 13 6 4.7521 -2.8625 4.4573 14 8 4.5956 -3.6809 3.5832 15 6 5.9505 -2.9510 5.3666 16 16 6.9588 -4.3794 4.8986 17 6 8.2508 -4.2452 6.0892 18 1 8.2388 -3.4418 6.8109 19 6 9.2840 -5.1721 6.0997 20 7 9.2983 -6.1516 5.2204 21 14 10.6540 -5.0294 7.3614 22 1 10.4062 -3.8507 8.2300 23 1 10.6899 -6.2584 8.1941 24 1 11.9546 -4.8660 6.6636 25 16 3.0491 -0.0115 2.4885 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7217 -1.2489 35 1 1.1802 -2.6363 0.9508 36 1 6.5444 -2.0417 5.2745 37 1 5.6164 -3.0639 6.3980 38 1 10.0205 -6.7991 5.2275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797570410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = 5.604995 kcal Electronic energy + Delta-G solvation = -21525.299422 eV Core-core repulsion = 18199.268864 eV Total energy + Delta-G solvation = -3326.030557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48465 -40.33746 -38.11433 -37.62129 -34.57650 -33.88072 -31.18811 -29.15690 -28.24095 -28.12706 -27.66105 -25.64560 -22.40416 -21.97843 -20.46138 -19.77068 -18.99601 -18.50374 -17.23467 -16.91647 -16.84573 -16.33859 -15.91409 -15.79617 -15.49202 -15.21661 -14.85202 -14.73379 -14.68943 -14.51315 -14.10940 -13.95864 -13.49395 -13.29758 -13.15024 -13.13629 -13.10584 -12.91371 -12.64354 -12.59013 -12.57268 -12.28401 -11.95663 -11.73164 -11.61137 -11.15188 -11.03274 -10.51159 -10.28848 -10.22164 -9.80670 -8.67865 -8.34592 -6.12418 -0.44373 0.19013 0.57218 0.66161 1.24583 1.39686 1.42368 1.44593 1.53893 1.65560 1.81846 2.26694 2.61954 2.80029 2.93288 3.00682 3.35679 3.57020 3.68520 3.88994 4.01776 4.12263 4.18546 4.32746 4.34214 4.52606 4.57774 4.77870 4.79283 4.88021 5.01424 5.02157 5.02554 5.14868 5.29492 5.40679 5.41088 5.44544 6.16375 6.21528 6.29488 6.74846 7.07912 8.74822 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.021623 B = 0.002744 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.579929 B =10202.214358 C =10703.156535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.192 4.192 6 C 0.014 3.986 7 N -0.471 5.471 8 C -0.008 4.008 9 C 0.060 3.940 10 H 0.211 0.789 11 C 0.243 3.757 12 N -0.435 5.435 13 C 0.388 3.612 14 O -0.425 6.425 15 C -0.159 4.159 16 S -0.167 6.167 17 C -0.538 4.538 18 H 0.087 0.913 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.274 1.274 25 S 0.223 5.777 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.841 21.313 -10.500 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.005 3.995 3 C -0.210 4.210 4 C -0.196 4.196 5 C -0.314 4.314 6 C -0.137 4.137 7 N -0.185 5.185 8 C -0.285 4.285 9 C 0.034 3.966 10 H 0.228 0.772 11 C -0.076 4.076 12 N -0.111 5.111 13 C 0.255 3.745 14 O -0.294 6.294 15 C -0.307 4.307 16 S 0.061 5.939 17 C -0.686 4.686 18 H 0.106 0.894 19 C -0.193 4.193 20 N -0.549 5.549 21 Si 0.819 3.181 22 H -0.178 1.178 23 H -0.204 1.204 24 H -0.199 1.199 25 S 0.481 5.519 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.197 0.803 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.702 19.920 -10.236 27.352 hybrid contribution 0.777 -0.474 0.883 1.268 sum -14.925 19.446 -9.353 26.237 Atomic orbital electron populations 1.21906 0.91854 1.02572 1.03028 1.19220 0.96520 0.95078 0.88659 1.22057 1.01551 0.93583 1.03820 1.21928 1.01100 1.00454 0.96166 1.26651 1.03946 0.98118 1.02662 1.21760 1.02987 0.94926 0.93985 1.66126 1.08836 1.35380 1.08175 1.25835 1.05275 0.96094 1.01344 1.17987 0.90011 1.03379 0.85263 0.77244 1.27882 0.93639 0.93294 0.92807 1.81217 1.09982 1.08240 1.11626 1.23809 0.84994 0.82945 0.82712 1.90504 1.72528 1.36697 1.29637 1.23992 0.98219 1.05321 1.03196 1.85553 1.26299 1.35035 1.47008 1.23200 1.09629 1.16787 1.18975 0.89449 1.26120 1.00726 0.93954 0.98471 1.70190 1.33511 1.14927 1.36225 0.84927 0.76983 0.78685 0.77519 1.17773 1.20425 1.19898 1.83418 1.44768 1.10903 1.12792 0.92565 0.89887 0.92536 0.92110 0.89561 0.91721 0.92599 0.89798 0.93034 0.80319 0.84199 0.86703 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.35 71.99 0.60 -0.73 16 2 C 0.01 0.10 0.93 -52.93 -0.05 0.05 16 3 C -0.15 -1.34 7.59 71.98 0.55 -0.79 16 4 C -0.14 -1.59 8.35 71.98 0.60 -0.99 16 5 C -0.19 -3.40 5.15 24.64 0.13 -3.27 16 6 C 0.01 0.34 10.62 83.66 0.89 1.23 16 7 N -0.47 -13.99 9.72 -191.45 -1.86 -15.85 16 8 C -0.01 -0.21 5.60 88.52 0.50 0.29 16 9 C 0.06 1.40 2.93 -14.09 -0.04 1.36 16 10 H 0.21 2.32 8.12 -2.39 -0.02 2.30 16 11 C 0.24 6.78 14.60 89.44 1.31 8.09 16 12 N -0.43 -14.12 18.54 20.01 0.37 -13.75 16 13 C 0.39 12.76 6.24 29.10 0.18 12.94 16 14 O -0.43 -17.98 15.18 -1.45 -0.02 -18.01 16 15 C -0.16 -5.61 6.09 71.23 0.43 -5.18 16 16 S -0.17 -8.84 20.58 -56.49 -1.16 -10.00 16 17 C -0.54 -29.60 9.50 67.96 0.65 -28.95 16 18 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.66 5.49 84.86 0.47 1.13 16 20 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 21 Si 1.00 42.82 29.55 68.60 2.03 44.84 16 22 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 S 0.22 3.65 21.81 -56.49 -1.23 2.42 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.62 8.00 -2.39 -0.02 0.60 16 29 H 0.06 0.58 8.00 -2.39 -0.02 0.56 16 30 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.54 8.00 -2.39 -0.02 0.52 16 32 H 0.05 0.71 8.00 -2.39 -0.02 0.69 16 33 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.14 3.96 8.14 -2.40 -0.02 3.94 16 37 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -79.27 362.63 5.68 -73.59 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.07 Total: 6.49 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 6.20 Total: -14.84 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.20 Total: -84.50 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.02 Total: -18.01 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -2.39 Total: -7.58 kcal Total: -79.27 5.68 -73.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797570410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.191 kcal (2) G-P(sol) polarization free energy of solvation -79.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds