Wall clock time and date at job start Tue Mar 31 2020 14:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42103 * 108.57614 * 2 1 4 4 O 1.42096 * 108.57933 * 228.97014 * 2 1 3 5 5 C 1.81401 * 101.92087 * 114.48208 * 2 1 3 6 6 C 1.52998 * 115.55370 * 55.34742 * 5 2 1 7 7 O 1.45202 * 109.46849 * 39.35316 * 6 5 2 8 8 C 1.34704 * 117.00014 * 180.02562 * 7 6 5 9 9 O 1.21460 * 120.00225 * 359.97438 * 8 7 6 10 10 C 1.47770 * 119.99743 * 180.27753 * 8 7 6 11 11 C 1.39962 * 120.03201 * 359.44634 * 10 8 7 12 12 C 1.38321 * 120.35174 * 179.69328 * 11 10 8 13 13 C 1.37754 * 120.41788 * 0.60835 * 12 11 10 14 14 C 1.40751 * 120.05116 * 359.67552 * 13 12 11 15 15 C 1.41440 * 120.17808 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99466 * 332.17144 * 15 14 13 17 17 C 1.39932 * 120.00413 * 152.16820 * 15 14 13 18 18 N 1.30834 * 119.99865 * 347.27552 * 17 15 14 19 19 Si 1.86797 * 120.00168 * 167.27402 * 17 15 14 20 20 H 1.48506 * 109.47186 * 90.00482 * 19 17 15 21 21 H 1.48501 * 109.46832 * 210.00031 * 19 17 15 22 22 H 1.48494 * 109.47123 * 330.00190 * 19 17 15 23 23 C 1.39049 * 120.02771 * 179.72599 * 10 8 7 24 24 C 1.53001 * 117.51970 * 201.05002 * 5 2 1 25 25 C 1.52997 * 60.00103 * 107.47928 * 24 5 2 26 26 H 1.09003 * 109.46750 * 309.96445 * 1 2 3 27 27 H 1.08993 * 109.46866 * 69.96367 * 1 2 3 28 28 H 1.09000 * 109.46930 * 189.96626 * 1 2 3 29 29 H 1.08997 * 109.47313 * 279.36139 * 6 5 2 30 30 H 1.08999 * 109.47539 * 159.35439 * 6 5 2 31 31 H 1.08005 * 119.82537 * 0.02562 * 11 10 8 32 32 H 1.08004 * 119.79046 * 180.30210 * 12 11 10 33 33 H 1.08008 * 119.97776 * 179.69567 * 13 12 11 34 34 H 0.97002 * 120.00158 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.21024 * 359.97438 * 23 10 8 36 36 H 1.08994 * 117.50153 * 214.97160 * 24 5 2 37 37 H 1.09007 * 117.49579 * 359.97438 * 24 5 2 38 38 H 1.09003 * 117.50021 * 252.50646 * 25 24 5 39 39 H 1.09002 * 117.49565 * 107.49286 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 1.5571 -2.1037 1.8800 7 8 1.6047 -2.9014 0.6676 8 6 1.0849 -4.1424 0.7313 9 8 0.6054 -4.5474 1.7712 10 6 1.1040 -5.0136 -0.4621 11 6 1.6517 -4.5458 -1.6622 12 6 1.6788 -5.3578 -2.7816 13 6 1.1561 -6.6314 -2.7321 14 6 0.5958 -7.1174 -1.5359 15 6 0.0589 -8.4248 -1.4819 16 1 -0.3378 -8.8829 -2.3759 17 6 0.0419 -9.1249 -0.2704 18 7 0.7358 -8.6862 0.7484 19 14 -0.9715 -10.6856 -0.1076 20 1 -0.1410 -11.8569 -0.4867 21 1 -1.4267 -10.8357 1.2979 22 1 -2.1522 -10.6049 -1.0044 23 6 0.5727 -6.2969 -0.3954 24 6 3.5738 -0.4702 2.2087 25 6 2.3421 0.2138 2.8053 26 1 -0.3633 0.6601 0.7877 27 1 -0.3633 0.3521 -0.9654 28 1 -0.3633 -1.0122 0.1779 29 1 0.5198 -1.9717 2.1874 30 1 2.1087 -2.6117 2.6710 31 1 2.0602 -3.5472 -1.7130 32 1 2.1080 -4.9893 -3.7016 33 1 1.1766 -7.2577 -3.6118 34 1 0.7238 -9.1712 1.5883 35 1 0.1454 -6.6608 0.5272 36 1 4.0350 -1.2703 2.7876 37 1 4.2604 0.1461 1.6282 38 1 2.2183 1.2804 2.6176 39 1 1.9931 -0.1364 3.7768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799710047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:27 Heat of formation + Delta-G solvation = -105.084689 kcal Electronic energy + Delta-G solvation = -25202.919031 eV Core-core repulsion = 21397.042987 eV Total energy + Delta-G solvation = -3805.876044 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99787 -38.11324 -37.32360 -36.94727 -36.02818 -35.60817 -33.70663 -30.47877 -29.76461 -29.48555 -27.89659 -25.32258 -23.23901 -22.97150 -22.24704 -20.96504 -19.87580 -18.66067 -17.87738 -17.51275 -16.42855 -16.35792 -16.04856 -15.78020 -15.67592 -15.12039 -14.76899 -14.51767 -13.77660 -13.55726 -13.36305 -13.30011 -13.14508 -12.97849 -12.62801 -12.32349 -12.13303 -12.09558 -11.94099 -11.70950 -11.54935 -11.29651 -11.16655 -11.09690 -10.97511 -10.73328 -10.58577 -10.49592 -10.24687 -10.22764 -9.69880 -9.52682 -9.26575 -7.74547 -7.49709 -6.77627 -4.43887 -0.08427 1.92758 2.47863 2.71114 2.79455 3.06692 3.09758 3.14105 3.15724 3.50847 3.54475 3.90640 3.91645 4.18885 4.35581 4.36907 4.61004 4.71048 4.92759 5.05832 5.12019 5.15606 5.27192 5.39806 5.53975 5.56125 5.58699 5.66934 6.17352 6.53745 6.57234 6.83382 6.95038 6.97852 7.19121 7.32678 7.71659 7.77581 7.92450 8.11282 8.43462 8.46072 8.78395 8.80872 10.17636 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.003286 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.913434 B = 8519.621395 C = 9223.367378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.459 3.541 3 O -0.946 6.946 4 O -0.904 6.904 5 C -0.640 4.640 6 C 0.114 3.886 7 O -0.352 6.352 8 C 0.517 3.483 9 O -0.517 6.517 10 C -0.122 4.122 11 C -0.183 4.183 12 C -0.109 4.109 13 C -0.193 4.193 14 C 0.093 3.907 15 C -0.463 4.463 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.797 5.797 19 Si 0.912 3.088 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.118 4.118 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.283 0.717 35 H 0.136 0.864 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 15.577 4.464 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.637 3.363 3 O -0.943 6.943 4 O -0.902 6.902 5 C -0.727 4.727 6 C 0.039 3.961 7 O -0.270 6.270 8 C 0.364 3.636 9 O -0.406 6.406 10 C -0.123 4.123 11 C -0.202 4.202 12 C -0.127 4.127 13 C -0.213 4.213 14 C 0.091 3.909 15 C -0.493 4.493 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.422 5.422 19 Si 0.737 3.263 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.155 4.155 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.248 15.692 4.412 16.348 hybrid contribution -0.985 -1.152 0.978 1.804 sum 0.263 14.540 5.390 15.509 Atomic orbital electron populations 1.30204 1.26497 1.11909 1.11501 1.06810 0.78574 0.74922 0.75973 1.93571 1.79928 1.34570 1.86237 1.93643 1.78547 1.66307 1.51665 1.31768 1.12663 1.07330 1.20935 1.21966 1.00928 0.85927 0.87312 1.86700 1.75449 1.27742 1.37119 1.21927 0.73412 0.78920 0.89311 1.90772 1.44001 1.73809 1.32027 1.18833 1.08620 0.94242 0.90649 1.20881 1.06626 1.00316 0.92395 1.20566 1.00646 0.94565 0.96932 1.21275 1.04745 0.96359 0.98921 1.17534 0.90049 0.92907 0.90454 1.19529 1.35671 0.98632 0.95444 0.90100 1.25925 0.93917 0.99568 0.95140 1.69757 1.31246 1.38103 1.03143 0.86246 0.80658 0.80994 0.78445 1.19476 1.20095 1.18476 1.21692 0.98451 0.89549 1.00673 1.22982 0.88005 1.02954 1.01176 1.22978 1.00641 0.97201 0.94707 0.85567 0.85097 0.85020 0.89983 0.89879 0.86322 0.88365 0.88308 0.90614 0.84599 0.86566 0.86916 0.86069 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.72 10.40 101.05 1.05 -4.67 16 2 S 2.46 28.56 5.15 -107.50 -0.55 28.01 16 3 O -0.95 -12.25 17.54 -57.83 -1.01 -13.27 16 4 O -0.90 -14.57 16.90 -64.78 -1.09 -15.66 16 5 C -0.64 -6.57 2.38 -90.62 -0.22 -6.78 16 6 C 0.11 1.48 4.94 37.16 0.18 1.67 16 7 O -0.35 -6.25 7.83 -46.38 -0.36 -6.61 16 8 C 0.52 11.20 7.90 34.63 0.27 11.47 16 9 O -0.52 -11.99 16.12 -19.24 -0.31 -12.30 16 10 C -0.12 -2.93 5.87 -105.05 -0.62 -3.55 16 11 C -0.18 -4.13 9.62 -38.91 -0.37 -4.50 16 12 C -0.11 -2.40 10.01 -39.73 -0.40 -2.80 16 13 C -0.19 -4.58 9.78 -38.81 -0.38 -4.96 16 14 C 0.09 2.43 5.55 -106.87 -0.59 1.84 16 15 C -0.46 -12.03 9.06 -37.73 -0.34 -12.37 16 16 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 17 C 0.07 1.80 5.22 -17.34 -0.09 1.71 16 18 N -0.80 -20.87 10.88 55.55 0.60 -20.27 16 19 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.08 -2.21 8.21 -38.42 -0.32 -2.53 16 24 C -0.11 -0.97 9.92 -26.73 -0.27 -1.24 16 25 C -0.12 -0.82 9.84 -26.73 -0.26 -1.08 16 26 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.13 1.24 7.76 -51.92 -0.40 0.84 16 29 H 0.08 0.93 8.12 -51.93 -0.42 0.50 16 30 H 0.08 1.07 7.94 -51.93 -0.41 0.65 16 31 H 0.12 2.54 7.59 -52.48 -0.40 2.14 16 32 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 33 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 34 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 35 H 0.14 3.80 5.80 -52.49 -0.30 3.50 16 36 H 0.12 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.12 0.69 7.85 -51.93 -0.41 0.29 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -33.15 352.01 -9.65 -42.80 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.85 Total: 6.21 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -2.34 Total: -27.79 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.60 Total: -20.27 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -2.78 Total: -47.84 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 28.56 SS G_CDS: -0.55 Total: 28.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.15 -9.65 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799710047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.287 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds