Wall clock time and date at job start Tue Mar 31 2020 14:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42103 * 108.57614 * 2 1 4 4 O 1.42096 * 108.57933 * 228.97014 * 2 1 3 5 5 C 1.81401 * 101.92087 * 114.48208 * 2 1 3 6 6 C 1.52998 * 115.55370 * 55.34742 * 5 2 1 7 7 O 1.45202 * 109.46849 * 39.35316 * 6 5 2 8 8 C 1.34704 * 117.00014 * 180.02562 * 7 6 5 9 9 O 1.21460 * 120.00225 * 359.97438 * 8 7 6 10 10 C 1.47770 * 119.99743 * 180.27753 * 8 7 6 11 11 C 1.39962 * 120.03201 * 359.44634 * 10 8 7 12 12 C 1.38321 * 120.35174 * 179.69328 * 11 10 8 13 13 C 1.37754 * 120.41788 * 0.60835 * 12 11 10 14 14 C 1.40751 * 120.05116 * 359.67552 * 13 12 11 15 15 C 1.41440 * 120.17808 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99466 * 332.17144 * 15 14 13 17 17 C 1.39932 * 120.00413 * 152.16820 * 15 14 13 18 18 N 1.30834 * 119.99865 * 347.27552 * 17 15 14 19 19 Si 1.86797 * 120.00168 * 167.27402 * 17 15 14 20 20 H 1.48506 * 109.47186 * 90.00482 * 19 17 15 21 21 H 1.48501 * 109.46832 * 210.00031 * 19 17 15 22 22 H 1.48494 * 109.47123 * 330.00190 * 19 17 15 23 23 C 1.39049 * 120.02771 * 179.72599 * 10 8 7 24 24 C 1.53001 * 117.51970 * 201.05002 * 5 2 1 25 25 C 1.52997 * 60.00103 * 107.47928 * 24 5 2 26 26 H 1.09003 * 109.46750 * 309.96445 * 1 2 3 27 27 H 1.08993 * 109.46866 * 69.96367 * 1 2 3 28 28 H 1.09000 * 109.46930 * 189.96626 * 1 2 3 29 29 H 1.08997 * 109.47313 * 279.36139 * 6 5 2 30 30 H 1.08999 * 109.47539 * 159.35439 * 6 5 2 31 31 H 1.08005 * 119.82537 * 0.02562 * 11 10 8 32 32 H 1.08004 * 119.79046 * 180.30210 * 12 11 10 33 33 H 1.08008 * 119.97776 * 179.69567 * 13 12 11 34 34 H 0.97002 * 120.00158 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.21024 * 359.97438 * 23 10 8 36 36 H 1.08994 * 117.50153 * 214.97160 * 24 5 2 37 37 H 1.09007 * 117.49579 * 359.97438 * 24 5 2 38 38 H 1.09003 * 117.50021 * 252.50646 * 25 24 5 39 39 H 1.09002 * 117.49565 * 107.49286 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 1.5571 -2.1037 1.8800 7 8 1.6047 -2.9014 0.6676 8 6 1.0849 -4.1424 0.7313 9 8 0.6054 -4.5474 1.7712 10 6 1.1040 -5.0136 -0.4621 11 6 1.6517 -4.5458 -1.6622 12 6 1.6788 -5.3578 -2.7816 13 6 1.1561 -6.6314 -2.7321 14 6 0.5958 -7.1174 -1.5359 15 6 0.0589 -8.4248 -1.4819 16 1 -0.3378 -8.8829 -2.3759 17 6 0.0419 -9.1249 -0.2704 18 7 0.7358 -8.6862 0.7484 19 14 -0.9715 -10.6856 -0.1076 20 1 -0.1410 -11.8569 -0.4867 21 1 -1.4267 -10.8357 1.2979 22 1 -2.1522 -10.6049 -1.0044 23 6 0.5727 -6.2969 -0.3954 24 6 3.5738 -0.4702 2.2087 25 6 2.3421 0.2138 2.8053 26 1 -0.3633 0.6601 0.7877 27 1 -0.3633 0.3521 -0.9654 28 1 -0.3633 -1.0122 0.1779 29 1 0.5198 -1.9717 2.1874 30 1 2.1087 -2.6117 2.6710 31 1 2.0602 -3.5472 -1.7130 32 1 2.1080 -4.9893 -3.7016 33 1 1.1766 -7.2577 -3.6118 34 1 0.7238 -9.1712 1.5883 35 1 0.1454 -6.6608 0.5272 36 1 4.0350 -1.2703 2.7876 37 1 4.2604 0.1461 1.6282 38 1 2.2183 1.2804 2.6176 39 1 1.9931 -0.1364 3.7768 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799710047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:26 Heat of formation + Delta-G solvation = -125.582938 kcal Electronic energy + Delta-G solvation = -25203.807902 eV Core-core repulsion = 21397.042987 eV Total energy + Delta-G solvation = -3806.764915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55580 -39.37359 -38.70654 -38.05126 -37.08081 -36.99158 -35.57981 -32.27851 -31.36150 -30.54967 -28.98953 -27.21334 -24.84407 -23.61149 -23.18081 -22.83641 -21.56430 -19.67819 -19.56423 -18.63365 -17.96887 -17.65510 -17.31496 -16.98095 -16.81605 -16.58854 -16.38662 -15.70714 -15.19999 -14.99588 -14.72701 -14.46839 -14.36345 -13.97662 -13.93521 -13.80470 -13.51623 -13.15428 -13.04901 -12.93750 -12.78824 -12.62404 -12.57116 -12.43866 -12.24441 -12.21014 -12.02702 -11.93595 -11.56841 -11.52092 -11.27886 -11.15416 -11.10182 -9.61607 -9.40548 -8.63651 -6.40464 -0.94548 0.10765 0.97365 1.39165 1.45508 1.45748 1.54222 1.73881 1.77337 2.21077 2.24687 2.67404 2.74935 3.07061 3.34411 3.50961 3.62158 3.69677 3.97987 4.04115 4.17395 4.21102 4.28220 4.43263 4.46564 4.58190 4.69594 4.81766 4.83994 4.91082 5.02772 5.06412 5.11958 5.17947 5.29707 5.45825 5.83342 5.91584 6.02137 6.22890 6.53399 6.76620 6.88139 6.89081 8.33595 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.003286 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.913434 B = 8519.621395 C = 9223.367378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.456 3.544 3 O -0.965 6.965 4 O -0.961 6.961 5 C -0.650 4.650 6 C 0.104 3.896 7 O -0.350 6.350 8 C 0.522 3.478 9 O -0.538 6.538 10 C -0.133 4.133 11 C -0.176 4.176 12 C -0.105 4.105 13 C -0.197 4.197 14 C 0.065 3.935 15 C -0.496 4.496 16 H 0.086 0.914 17 C 0.029 3.971 18 N -0.834 5.834 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.255 1.255 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.087 4.087 26 H 0.161 0.839 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.287 0.713 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 16.854 4.922 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.639 3.361 3 O -0.962 6.962 4 O -0.958 6.958 5 C -0.739 4.739 6 C 0.030 3.970 7 O -0.267 6.267 8 C 0.370 3.630 9 O -0.430 6.430 10 C -0.135 4.135 11 C -0.196 4.196 12 C -0.123 4.123 13 C -0.216 4.216 14 C 0.063 3.937 15 C -0.525 4.525 16 H 0.104 0.896 17 C -0.185 4.185 18 N -0.461 5.461 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.134 4.134 24 C -0.164 4.164 25 C -0.124 4.124 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.817 17.013 4.832 17.705 hybrid contribution -0.772 -1.343 0.863 1.774 sum 0.044 15.670 5.695 16.673 Atomic orbital electron populations 1.30111 1.22941 1.12662 1.13729 1.06519 0.79811 0.73932 0.75793 1.93542 1.81087 1.34925 1.86630 1.93575 1.80465 1.67392 1.54389 1.31525 1.14473 1.06453 1.21420 1.22399 1.02727 0.86377 0.85492 1.86662 1.74251 1.26124 1.39672 1.21513 0.73284 0.79970 0.88214 1.90747 1.45036 1.74688 1.32542 1.19088 1.07960 0.94123 0.92296 1.21117 1.05555 1.00835 0.92068 1.20958 0.99490 0.93719 0.98140 1.21543 1.04167 0.97295 0.98633 1.17899 0.90888 0.93474 0.91451 1.19839 1.37064 0.99180 0.96432 0.89569 1.26830 0.94443 1.02856 0.94336 1.69855 1.32649 1.39777 1.03776 0.85138 0.78992 0.76705 0.78494 1.18487 1.19666 1.17821 1.21511 1.00805 0.90984 1.00129 1.23213 0.88025 1.03696 1.01430 1.23278 0.97790 0.97394 0.93970 0.82027 0.83938 0.85485 0.87997 0.89657 0.85021 0.84655 0.86611 0.90277 0.87164 0.85999 0.86529 0.84274 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -9.76 10.40 113.37 1.18 -8.58 16 2 S 2.46 54.17 5.15 -56.49 -0.29 53.88 16 3 O -0.96 -23.69 17.54 -127.37 -2.23 -25.92 16 4 O -0.96 -31.05 16.90 -120.73 -2.04 -33.09 16 5 C -0.65 -12.06 2.38 -10.79 -0.03 -12.08 16 6 C 0.10 2.57 4.94 71.98 0.36 2.92 16 7 O -0.35 -12.32 7.83 -50.52 -0.40 -12.72 16 8 C 0.52 23.00 7.90 70.34 0.56 23.55 16 9 O -0.54 -25.54 16.12 19.96 0.32 -25.22 16 10 C -0.13 -6.54 5.87 -20.14 -0.12 -6.66 16 11 C -0.18 -7.92 9.62 22.71 0.22 -7.70 16 12 C -0.11 -4.51 10.01 22.17 0.22 -4.29 16 13 C -0.20 -9.31 9.78 22.77 0.22 -9.08 16 14 C 0.06 3.50 5.55 -21.32 -0.12 3.38 16 15 C -0.50 -26.42 9.06 23.47 0.21 -26.21 16 16 H 0.09 4.31 7.88 -2.91 -0.02 4.29 16 17 C 0.03 1.48 5.22 85.25 0.45 1.93 16 18 N -0.83 -45.30 10.88 21.82 0.24 -45.06 16 19 Si 0.99 38.56 29.58 68.60 2.03 40.59 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 21 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 23 C -0.11 -6.27 8.21 23.02 0.19 -6.08 16 24 C -0.13 -1.91 9.92 30.59 0.30 -1.61 16 25 C -0.09 -0.90 9.84 30.59 0.30 -0.60 16 26 H 0.16 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.13 2.16 7.76 -2.39 -0.02 2.14 16 29 H 0.10 2.09 8.12 -2.39 -0.02 2.08 16 30 H 0.09 2.08 7.94 -2.39 -0.02 2.06 16 31 H 0.13 5.56 7.59 -2.91 -0.02 5.53 16 32 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 33 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 34 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 35 H 0.11 6.54 5.80 -2.91 -0.02 6.52 16 36 H 0.12 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.14 1.03 7.85 -2.39 -0.02 1.01 16 39 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.68 352.01 2.64 -72.04 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.07 Total: 26.60 kcal Atomic # 6 Polarization: -55.05 SS G_CDS: 3.94 Total: -51.11 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.24 Total: -45.06 kcal Atomic # 8 Polarization: -92.60 SS G_CDS: -4.35 Total: -96.95 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.29 Total: 53.88 kcal Total: -74.68 2.64 -72.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799710047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.543 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds