Wall clock time and date at job start Tue Mar 31 2020 14:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34688 * 116.99567 * 2 1 4 4 O 1.21443 * 120.00153 * 0.02562 * 3 2 1 5 5 C 1.47944 * 119.99757 * 180.02562 * 3 2 1 6 6 C 1.39598 * 119.99602 * 0.27353 * 5 3 2 7 7 C 1.37813 * 119.99659 * 180.25563 * 6 5 3 8 8 C 1.39606 * 119.99886 * 359.48912 * 7 6 5 9 9 C 1.47936 * 119.99902 * 180.25120 * 8 7 6 10 10 O 1.21443 * 120.00297 * 0.02562 * 9 8 7 11 11 O 1.34696 * 119.99770 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99770 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.46918 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47235 * 179.97438 * 13 12 11 15 15 S 1.81003 * 109.47342 * 179.97438 * 14 13 12 16 16 C 1.76202 * 99.99789 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99390 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00471 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99516 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47241 * 60.00142 * 20 18 16 22 22 H 1.48500 * 109.46742 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47003 * 299.99790 * 20 18 16 24 24 C 1.39595 * 119.99679 * 0.24069 * 8 7 6 25 25 C 1.37809 * 120.00607 * 0.02562 * 24 8 7 26 26 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46939 * 299.99666 * 1 2 3 28 28 H 1.08995 * 109.47574 * 59.99772 * 1 2 3 29 29 H 1.07995 * 120.00866 * 359.97438 * 6 5 3 30 30 H 1.08002 * 120.00410 * 179.77510 * 7 6 5 31 31 H 1.09004 * 109.47029 * 300.00063 * 12 11 9 32 32 H 1.09003 * 109.47073 * 59.99782 * 12 11 9 33 33 H 1.09004 * 109.46972 * 299.99669 * 13 12 11 34 34 H 1.09003 * 109.47335 * 59.99482 * 13 12 11 35 35 H 1.09004 * 109.46958 * 299.99785 * 14 13 12 36 36 H 1.09003 * 109.47295 * 59.99565 * 14 13 12 37 37 H 0.97003 * 120.00038 * 180.02562 * 19 18 16 38 38 H 1.08005 * 119.99712 * 180.02562 * 24 8 7 39 39 H 1.08001 * 120.00584 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4019 2.2186 0.0005 5 6 3.5408 1.2776 -0.0006 6 6 4.3011 0.1068 -0.0069 7 6 5.6773 0.1789 -0.0021 8 6 6.3111 1.4229 -0.0017 9 6 7.7884 1.5003 -0.0022 10 8 8.4499 0.4818 -0.0034 11 8 8.3999 2.7004 -0.0013 12 6 9.8519 2.7004 -0.0024 13 6 10.3618 4.1429 -0.0005 14 6 11.8918 4.1430 -0.0010 15 16 12.4951 5.8495 0.0004 16 6 14.2331 5.5595 -0.0012 17 1 14.6118 4.5482 -0.0031 18 6 15.1154 6.6311 -0.0002 19 7 14.6538 7.8637 0.0016 20 14 16.9580 6.3237 -0.0026 21 1 17.3298 5.5541 -1.2169 22 1 17.6765 7.6233 -0.0016 23 1 17.3322 5.5496 1.2080 24 6 5.5507 2.5935 -0.0011 25 6 4.1745 2.5215 -0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.8109 -0.8555 -0.0109 30 1 6.2656 -0.7268 -0.0033 31 1 10.2159 2.1856 0.8867 32 1 10.2145 2.1876 -0.8933 33 1 9.9978 4.6581 -0.8895 34 1 9.9991 4.6554 0.8905 35 1 12.2554 3.6279 0.8881 36 1 12.2549 3.6304 -0.8919 37 1 15.2704 8.6125 0.0020 38 1 6.0410 3.5559 -0.0012 39 1 3.5862 3.4272 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805326142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:52 Heat of formation + Delta-G solvation = -157.121958 kcal Electronic energy + Delta-G solvation = -22676.694427 eV Core-core repulsion = 18868.561877 eV Total energy + Delta-G solvation = -3808.132550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18609 -40.62246 -38.98323 -36.98528 -36.74664 -33.62988 -32.46916 -32.33794 -31.60266 -28.48612 -26.92480 -25.65678 -25.08517 -23.18628 -22.28806 -21.39755 -20.93080 -18.66042 -18.33209 -17.51900 -17.33703 -17.06678 -16.88762 -16.70581 -15.40150 -15.12323 -14.84576 -14.80409 -14.77479 -14.28539 -14.06447 -14.01137 -13.55212 -13.19673 -13.03820 -12.71559 -12.67461 -12.62251 -12.15109 -11.69267 -11.38496 -11.34244 -11.18631 -11.13316 -11.01846 -10.97513 -10.78781 -10.66314 -10.35735 -9.70148 -9.66908 -9.60974 -9.08458 -8.38497 -6.58537 -6.26177 -3.97610 -0.26596 0.77878 1.64759 2.09107 2.35220 2.40829 3.20174 3.22013 3.26606 3.27511 3.50449 4.04554 4.18544 4.28053 4.36399 4.37982 4.59751 4.68383 4.69344 4.79508 5.01039 5.05523 5.10516 5.11316 5.14491 5.33684 5.42116 5.45118 5.52346 5.63903 5.73066 5.73533 5.80377 5.89140 6.09550 6.14681 6.31416 6.40836 6.62480 7.16184 7.50603 7.57258 8.32990 9.20110 10.81880 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.041499 B = 0.001623 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.553812 B =17246.302106 C =17889.804533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.507 3.493 4 O -0.498 6.498 5 C -0.098 4.098 6 C -0.074 4.074 7 C -0.070 4.070 8 C -0.085 4.085 9 C 0.504 3.496 10 O -0.500 6.500 11 O -0.348 6.348 12 C 0.073 3.927 13 C -0.098 4.098 14 C -0.115 4.115 15 S -0.123 6.123 16 C -0.520 4.520 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.869 5.869 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.274 1.274 24 C -0.072 4.072 25 C -0.067 4.067 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.269 0.731 38 H 0.154 0.846 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.710 -16.599 -0.012 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.352 3.648 4 O -0.387 6.387 5 C -0.099 4.099 6 C -0.092 4.092 7 C -0.088 4.088 8 C -0.086 4.086 9 C 0.347 3.653 10 O -0.389 6.389 11 O -0.264 6.264 12 C -0.001 4.001 13 C -0.137 4.137 14 C -0.264 4.264 15 S 0.106 5.894 16 C -0.668 4.668 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.090 4.090 25 C -0.085 4.085 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.172 0.828 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.220 -15.397 -0.011 31.273 hybrid contribution 1.797 -1.345 -0.002 2.245 sum -25.422 -16.742 -0.013 30.440 Atomic orbital electron populations 1.23340 0.75448 1.04064 1.02878 1.86533 1.23966 1.32371 1.84146 1.21236 0.89041 0.81644 0.72909 1.90858 1.66663 1.36012 1.45119 1.19353 0.89212 0.95191 1.06162 1.21414 0.93129 0.98401 0.96275 1.21307 0.94236 0.97322 0.95961 1.19496 0.89927 0.94986 1.04197 1.21108 0.88774 0.82062 0.73316 1.90847 1.66676 1.36187 1.45160 1.86510 1.24907 1.31704 1.83323 1.23355 0.74078 0.99846 1.02857 1.21297 0.94795 0.93146 1.04422 1.23184 0.95411 1.04388 1.03386 1.84652 1.06564 1.01329 1.96896 1.22658 0.89839 0.95425 1.58913 0.90877 1.25009 0.99715 0.94470 0.94468 1.70001 1.35456 0.98029 1.46973 0.86209 0.82674 0.77684 0.78891 1.19903 1.20776 1.19898 1.21553 0.93050 0.98963 0.95388 1.21307 0.94353 0.97110 0.95703 0.87708 0.91600 0.91592 0.83386 0.83389 0.90887 0.90880 0.90242 0.90245 0.91692 0.91694 0.92170 0.82842 0.83401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.23 16 2 O -0.35 -2.52 9.81 -40.46 -0.40 -2.92 16 3 C 0.51 4.46 7.90 34.71 0.27 4.74 16 4 O -0.50 -5.55 16.12 -19.22 -0.31 -5.86 16 5 C -0.10 -0.78 5.88 -104.91 -0.62 -1.40 16 6 C -0.07 -0.51 9.60 -39.23 -0.38 -0.88 16 7 C -0.07 -0.56 9.58 -39.23 -0.38 -0.94 16 8 C -0.08 -0.82 5.88 -104.91 -0.62 -1.44 16 9 C 0.50 6.24 7.90 34.70 0.27 6.51 16 10 O -0.50 -7.32 16.12 -19.22 -0.31 -7.63 16 11 O -0.35 -4.48 9.46 -40.48 -0.38 -4.86 16 12 C 0.07 1.00 5.47 37.15 0.20 1.21 16 13 C -0.10 -1.53 5.60 -26.74 -0.15 -1.68 16 14 C -0.12 -2.23 5.67 37.16 0.21 -2.02 16 15 S -0.12 -3.13 21.44 -107.50 -2.30 -5.44 16 16 C -0.52 -14.72 9.50 30.94 0.29 -14.42 16 17 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 19 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 20 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.07 -0.59 9.60 -39.23 -0.38 -0.97 16 25 C -0.07 -0.53 9.58 -39.23 -0.38 -0.90 16 26 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.15 0.70 7.60 -52.49 -0.40 0.31 16 30 H 0.15 1.08 7.64 -52.49 -0.40 0.68 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 36 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.15 1.14 7.60 -52.48 -0.40 0.74 16 39 H 0.15 1.05 7.64 -52.49 -0.40 0.65 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -33.54 365.10 -8.10 -41.63 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.95 Total: -2.76 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.66 Total: -9.03 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.73 Total: -24.93 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -1.40 Total: -21.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.54 -8.10 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805326142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.487 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds