Wall clock time and date at job start Tue Mar 31 2020 13:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48502 * 109.46903 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.47288 * 29.99696 * 3 2 1 6 6 H 1.48492 * 109.47755 * 150.00106 * 3 2 1 7 7 C 1.38805 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99864 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47253 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47283 * 179.97438 * 12 11 10 14 14 C 1.34226 * 117.00156 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00308 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.35601 * 116.99687 * 179.97438 * 17 16 14 19 19 C 1.38683 * 120.17278 * 359.95134 * 18 17 16 20 20 C 1.38050 * 120.11330 * 180.02562 * 19 18 17 21 21 C 1.38635 * 120.45286 * 0.02562 * 20 19 18 22 22 C 1.37674 * 120.33597 * 0.02562 * 21 20 19 23 23 C 1.40012 * 119.88240 * 359.97438 * 22 21 20 24 24 C 1.46785 * 120.22034 * 180.02562 * 23 22 21 25 25 O 1.21293 * 120.00523 * 0.02562 * 24 23 22 26 26 H 0.96999 * 120.00024 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 60.00646 * 10 9 7 28 28 H 1.08998 * 109.47226 * 300.00076 * 10 9 7 29 29 H 1.09005 * 109.47136 * 60.00193 * 11 10 9 30 30 H 1.09005 * 109.47313 * 300.00704 * 11 10 9 31 31 H 1.09005 * 109.46988 * 59.99985 * 12 11 10 32 32 H 1.08998 * 109.47018 * 300.00032 * 12 11 10 33 33 H 1.08995 * 109.47445 * 59.99794 * 16 14 13 34 34 H 1.09009 * 109.46632 * 299.99906 * 16 14 13 35 35 H 1.07999 * 119.94598 * 0.04542 * 19 18 17 36 36 H 1.07994 * 119.77766 * 180.27601 * 20 19 18 37 37 H 1.08000 * 119.82889 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.05229 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.00197 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9793 -5.3243 0.0018 12 6 3.1513 -6.3077 0.0019 13 8 2.6421 -7.6675 0.0029 14 6 3.5484 -8.6576 0.0027 15 8 4.7281 -8.3967 0.0021 16 6 3.0945 -10.0946 0.0031 17 8 4.2358 -10.9546 0.0033 18 6 4.0003 -12.2900 0.0042 19 6 2.6985 -12.7682 0.0059 20 6 2.4601 -14.1280 0.0074 21 6 3.5159 -15.0264 0.0077 22 6 4.8155 -14.5721 0.0071 23 6 5.0734 -13.1960 0.0056 24 6 6.4562 -12.7035 0.0044 25 8 7.3800 -13.4894 0.0042 26 1 -0.4850 0.8400 0.0004 27 1 3.1251 -3.7310 0.8909 28 1 3.1238 -3.7317 -0.8891 29 1 1.3702 -5.4844 -0.8880 30 1 1.3710 -5.4842 0.8920 31 1 3.7600 -6.1474 0.8919 32 1 3.7598 -6.1479 -0.8881 33 1 2.4947 -10.2865 -0.8865 34 1 2.4955 -10.2862 0.8935 35 1 1.8698 -12.0757 0.0058 36 1 1.4442 -14.4944 0.0042 37 1 3.3178 -16.0881 0.0093 38 1 5.6346 -15.2762 0.0078 39 1 6.6511 -11.6411 0.0037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805338495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:30 Heat of formation + Delta-G solvation = -138.694381 kcal Electronic energy + Delta-G solvation = -22733.160753 eV Core-core repulsion = 18925.827283 eV Total energy + Delta-G solvation = -3807.333470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26223 -40.46020 -39.08991 -37.82655 -36.78579 -33.66445 -32.48711 -32.08443 -31.01127 -29.37412 -26.51254 -25.48826 -25.34575 -23.09087 -21.80233 -21.45775 -21.07835 -19.06813 -17.85486 -17.52738 -17.42077 -17.37765 -16.68392 -16.36104 -16.20845 -15.46028 -14.85789 -14.81545 -14.79510 -14.65228 -14.38248 -14.36857 -13.73793 -13.26556 -13.21584 -12.76647 -12.74409 -12.42431 -12.19733 -11.82796 -11.79785 -11.45044 -11.24837 -11.06843 -10.98087 -10.78561 -10.66557 -10.42360 -10.10090 -9.69393 -9.64330 -9.11646 -8.91690 -8.41630 -6.61701 -6.29003 -4.00502 0.14414 0.78413 1.60339 1.81736 2.04672 2.91275 3.18648 3.19502 3.23328 3.26192 3.47607 3.85209 4.11471 4.16140 4.18702 4.35976 4.38834 4.40323 4.62722 4.69519 4.92637 4.99354 5.04775 5.07804 5.13123 5.25505 5.30596 5.37118 5.47823 5.67924 5.74659 5.76635 5.88443 6.03165 6.04252 6.25060 6.35874 6.55169 6.58001 7.07991 7.41640 7.55157 8.30683 9.17606 10.79131 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.001619 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.367130 B =17289.158791 C =18060.474812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.075 3.925 13 O -0.350 6.350 14 C 0.462 3.538 15 O -0.485 6.485 16 C 0.066 3.934 17 O -0.289 6.289 18 C 0.182 3.818 19 C -0.224 4.224 20 C -0.043 4.043 21 C -0.171 4.171 22 C -0.023 4.023 23 C -0.220 4.220 24 C 0.389 3.611 25 O -0.467 6.467 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -29.096 0.010 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.267 6.267 14 C 0.303 3.697 15 O -0.371 6.371 16 C -0.010 4.010 17 O -0.202 6.202 18 C 0.135 3.865 19 C -0.243 4.243 20 C -0.061 4.061 21 C -0.189 4.189 22 C -0.041 4.041 23 C -0.222 4.222 24 C 0.249 3.751 25 O -0.341 6.341 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.259 -29.323 0.015 29.504 hybrid contribution 1.485 1.461 -0.009 2.084 sum 4.745 -27.862 0.006 28.263 Atomic orbital electron populations 1.70009 1.05936 1.27468 1.47037 1.25017 0.95099 0.99142 0.94457 0.86142 0.79447 0.81399 0.78421 1.20220 1.20707 1.19650 1.22698 0.94609 0.90642 1.58830 0.90801 1.84646 1.08656 0.99257 1.96899 1.23186 1.03562 0.96216 1.03449 1.21304 0.96330 0.91536 1.04452 1.23394 0.98033 0.75553 1.03019 1.86417 1.39691 1.17042 1.83557 1.22678 0.85018 0.87909 0.74096 1.90736 1.18305 1.84638 1.43438 1.22007 0.87776 0.85117 1.06062 1.85979 1.32876 1.13591 1.87708 1.19177 0.93356 0.81695 0.92259 1.21327 0.95294 0.97521 1.10159 1.21249 0.99801 0.92268 0.92769 1.21118 0.92279 1.00424 1.05058 1.21348 0.97615 0.93577 0.91546 1.20340 0.95032 0.93061 1.13729 1.23895 0.86167 0.95478 0.69581 1.90517 1.46722 1.61306 1.35565 0.92210 0.91648 0.91654 0.90214 0.90221 0.90775 0.90770 0.86980 0.86986 0.84316 0.84897 0.85055 0.84146 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.22 55.49 0.73 -24.69 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.55 9.50 30.94 0.29 -14.26 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.12 -3.09 21.44 -107.50 -2.30 -5.39 16 10 C -0.12 -2.19 5.67 37.16 0.21 -1.98 16 11 C -0.10 -1.46 5.60 -26.73 -0.15 -1.61 16 12 C 0.07 0.96 5.47 37.15 0.20 1.16 16 13 O -0.35 -4.02 10.22 -39.25 -0.40 -4.42 16 14 C 0.46 4.98 8.03 36.01 0.29 5.27 16 15 O -0.49 -6.92 16.25 -25.48 -0.41 -7.33 16 16 C 0.07 0.43 5.33 36.01 0.19 0.63 16 17 O -0.29 -2.47 8.85 -38.46 -0.34 -2.81 16 18 C 0.18 1.37 6.71 -38.59 -0.26 1.11 16 19 C -0.22 -1.21 9.03 -39.49 -0.36 -1.57 16 20 C -0.04 -0.20 10.03 -39.50 -0.40 -0.60 16 21 C -0.17 -0.90 10.02 -39.64 -0.40 -1.30 16 22 C -0.02 -0.16 9.59 -39.12 -0.38 -0.54 16 23 C -0.22 -1.84 5.88 -104.95 -0.62 -2.45 16 24 C 0.39 3.70 11.19 34.19 0.38 4.08 16 25 O -0.47 -5.74 17.16 5.55 0.10 -5.64 16 26 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 32 H 0.07 0.95 8.13 -51.93 -0.42 0.52 16 33 H 0.11 0.45 7.66 -51.93 -0.40 0.05 16 34 H 0.11 0.45 7.66 -51.92 -0.40 0.05 16 35 H 0.14 0.42 6.30 -52.49 -0.33 0.09 16 36 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 37 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 38 H 0.14 0.93 7.65 -52.48 -0.40 0.53 16 39 H 0.11 0.94 7.64 -52.48 -0.40 0.54 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -34.40 363.53 -8.11 -42.51 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.85 Total: -3.70 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.07 Total: -10.14 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.73 Total: -24.69 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -1.06 Total: -20.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.30 Total: -5.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.40 -8.11 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.185 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds