Wall clock time and date at job start Tue Mar 31 2020 13:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48502 * 109.46903 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.47288 * 29.99696 * 3 2 1 6 6 H 1.48492 * 109.47755 * 150.00106 * 3 2 1 7 7 C 1.38805 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99864 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47253 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47283 * 179.97438 * 12 11 10 14 14 C 1.34226 * 117.00156 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00308 * 180.02562 * 14 13 12 17 17 O 1.42901 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.35601 * 116.99687 * 179.97438 * 17 16 14 19 19 C 1.38683 * 120.17278 * 359.95134 * 18 17 16 20 20 C 1.38050 * 120.11330 * 180.02562 * 19 18 17 21 21 C 1.38635 * 120.45286 * 0.02562 * 20 19 18 22 22 C 1.37674 * 120.33597 * 0.02562 * 21 20 19 23 23 C 1.40012 * 119.88240 * 359.97438 * 22 21 20 24 24 C 1.46785 * 120.22034 * 180.02562 * 23 22 21 25 25 O 1.21293 * 120.00523 * 0.02562 * 24 23 22 26 26 H 0.96999 * 120.00024 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 60.00646 * 10 9 7 28 28 H 1.08998 * 109.47226 * 300.00076 * 10 9 7 29 29 H 1.09005 * 109.47136 * 60.00193 * 11 10 9 30 30 H 1.09005 * 109.47313 * 300.00704 * 11 10 9 31 31 H 1.09005 * 109.46988 * 59.99985 * 12 11 10 32 32 H 1.08998 * 109.47018 * 300.00032 * 12 11 10 33 33 H 1.08995 * 109.47445 * 59.99794 * 16 14 13 34 34 H 1.09009 * 109.46632 * 299.99906 * 16 14 13 35 35 H 1.07999 * 119.94598 * 0.04542 * 19 18 17 36 36 H 1.07994 * 119.77766 * 180.27601 * 20 19 18 37 37 H 1.08000 * 119.82889 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.05229 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.00197 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0013 11 6 1.9793 -5.3243 0.0018 12 6 3.1513 -6.3077 0.0019 13 8 2.6421 -7.6675 0.0029 14 6 3.5484 -8.6576 0.0027 15 8 4.7281 -8.3967 0.0021 16 6 3.0945 -10.0946 0.0031 17 8 4.2358 -10.9546 0.0033 18 6 4.0003 -12.2900 0.0042 19 6 2.6985 -12.7682 0.0059 20 6 2.4601 -14.1280 0.0074 21 6 3.5159 -15.0264 0.0077 22 6 4.8155 -14.5721 0.0071 23 6 5.0734 -13.1960 0.0056 24 6 6.4562 -12.7035 0.0044 25 8 7.3800 -13.4894 0.0042 26 1 -0.4850 0.8400 0.0004 27 1 3.1251 -3.7310 0.8909 28 1 3.1238 -3.7317 -0.8891 29 1 1.3702 -5.4844 -0.8880 30 1 1.3710 -5.4842 0.8920 31 1 3.7600 -6.1474 0.8919 32 1 3.7598 -6.1479 -0.8881 33 1 2.4947 -10.2865 -0.8865 34 1 2.4955 -10.2862 0.8935 35 1 1.8698 -12.0757 0.0058 36 1 1.4442 -14.4944 0.0042 37 1 3.3178 -16.0881 0.0093 38 1 5.6346 -15.2762 0.0078 39 1 6.6511 -11.6411 0.0037 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805338495.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:30 Heat of formation + Delta-G solvation = -158.360246 kcal Electronic energy + Delta-G solvation = -22734.013529 eV Core-core repulsion = 18925.827283 eV Total energy + Delta-G solvation = -3808.186246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93224 -41.21305 -39.83245 -38.41041 -37.70553 -34.94012 -34.58538 -32.59269 -31.49364 -30.01962 -28.03707 -27.24158 -25.93247 -23.70930 -22.75277 -22.39464 -21.77442 -19.66921 -19.53543 -18.47662 -18.25426 -18.18599 -17.36103 -17.05851 -16.98402 -16.89792 -16.23578 -15.88408 -15.84450 -15.34405 -15.24578 -15.11768 -14.89335 -14.39223 -14.19654 -13.84595 -13.74418 -13.46849 -13.13476 -12.95364 -12.83782 -12.63571 -12.41926 -12.41416 -12.25170 -12.24351 -11.73394 -11.54000 -11.43764 -11.15013 -10.82709 -10.35969 -10.10528 -9.38796 -8.67402 -8.38439 -6.14408 -0.39512 0.34811 0.87467 0.99804 1.32599 1.39504 1.42758 1.48760 1.71289 2.25738 2.35126 2.75619 2.96345 3.25261 3.28763 3.41743 3.74304 3.84952 3.87433 3.96305 4.00584 4.01397 4.14830 4.25949 4.30637 4.32963 4.40794 4.51801 4.58425 4.69276 4.85452 5.02768 5.06893 5.10030 5.34335 5.35881 5.40115 5.46405 5.61911 6.09031 6.17545 6.37006 6.56296 7.04522 8.70746 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.034888 B = 0.001619 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.367130 B =17289.158791 C =18060.474812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.073 0.927 9 S -0.182 6.182 10 C -0.094 4.094 11 C -0.085 4.085 12 C 0.082 3.918 13 O -0.346 6.346 14 C 0.462 3.538 15 O -0.527 6.527 16 C 0.069 3.931 17 O -0.312 6.312 18 C 0.175 3.825 19 C -0.222 4.222 20 C -0.036 4.036 21 C -0.170 4.170 22 C -0.036 4.036 23 C -0.245 4.245 24 C 0.392 3.608 25 O -0.506 6.506 26 H 0.272 0.728 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -30.146 0.004 30.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.690 4.690 8 H 0.092 0.908 9 S 0.047 5.953 10 C -0.243 4.243 11 C -0.124 4.124 12 C 0.007 3.993 13 O -0.263 6.263 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.006 4.006 17 O -0.225 6.225 18 C 0.129 3.871 19 C -0.240 4.240 20 C -0.054 4.054 21 C -0.188 4.188 22 C -0.054 4.054 23 C -0.247 4.247 24 C 0.255 3.745 25 O -0.383 6.383 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.082 -30.384 0.008 30.455 hybrid contribution 1.791 1.664 -0.008 2.444 sum 3.873 -28.720 0.000 28.980 Atomic orbital electron populations 1.70132 1.07585 1.28609 1.47838 1.26024 0.96022 1.03000 0.93731 0.85038 0.78177 0.76536 0.78807 1.19334 1.19903 1.18872 1.23069 0.94858 0.92081 1.59020 0.90844 1.84581 1.12980 1.00687 1.97060 1.23088 1.00843 0.96725 1.03658 1.21110 0.96971 0.89520 1.04790 1.23088 0.96741 0.76299 1.03213 1.86402 1.39766 1.16509 1.83616 1.23562 0.84324 0.89189 0.72384 1.90729 1.20034 1.85268 1.45496 1.22281 0.87353 0.81796 1.09179 1.85931 1.34266 1.14291 1.88053 1.19244 0.94050 0.81050 0.92748 1.21691 0.94912 0.98516 1.08931 1.21689 1.01094 0.91873 0.90704 1.21434 0.91551 1.01913 1.03890 1.21444 0.98662 0.93052 0.92278 1.20307 0.94460 0.94034 1.15919 1.24101 0.86782 0.95484 0.68141 1.90493 1.47900 1.62007 1.37895 0.91895 0.91400 0.91380 0.89900 0.89913 0.90681 0.90666 0.83644 0.83654 0.81386 0.81675 0.82871 0.84737 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.45 13.22 21.65 0.29 -53.17 16 2 C 0.02 0.98 5.49 84.86 0.47 1.44 16 3 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.54 -30.61 9.50 67.96 0.65 -29.96 16 8 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 9 S -0.18 -9.25 21.44 -56.49 -1.21 -10.47 16 10 C -0.09 -3.52 5.67 71.98 0.41 -3.11 16 11 C -0.09 -2.44 5.60 30.59 0.17 -2.27 16 12 C 0.08 1.99 5.47 71.98 0.39 2.38 16 13 O -0.35 -7.20 10.22 -51.38 -0.53 -7.73 16 14 C 0.46 9.10 8.03 71.24 0.57 9.68 16 15 O -0.53 -14.74 16.25 28.40 0.46 -14.28 16 16 C 0.07 0.68 5.33 71.24 0.38 1.06 16 17 O -0.31 -4.83 8.85 -70.04 -0.62 -5.45 16 18 C 0.18 2.33 6.71 22.91 0.15 2.48 16 19 C -0.22 -1.57 9.03 22.33 0.20 -1.37 16 20 C -0.04 -0.20 10.03 22.32 0.22 0.03 16 21 C -0.17 -1.38 10.02 22.23 0.22 -1.16 16 22 C -0.04 -0.50 9.59 22.57 0.22 -0.28 16 23 C -0.25 -4.08 5.88 -20.08 -0.12 -4.20 16 24 C 0.39 7.97 11.19 70.06 0.78 8.75 16 25 O -0.51 -13.37 17.16 -3.07 -0.05 -13.43 16 26 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.07 2.50 8.14 -2.40 -0.02 2.48 16 29 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.07 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.15 0.51 7.66 -2.39 -0.02 0.49 16 34 H 0.15 0.51 7.66 -2.38 -0.02 0.49 16 35 H 0.17 0.12 6.30 -2.91 -0.02 0.11 16 36 H 0.17 -0.13 8.06 -2.91 -0.02 -0.16 16 37 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 38 H 0.13 1.89 7.65 -2.91 -0.02 1.87 16 39 H 0.12 2.11 7.64 -2.91 -0.02 2.09 16 Total: -1.00 -76.99 363.53 6.15 -70.84 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.06 Total: 4.99 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.72 Total: -16.52 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.29 Total: -53.17 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.74 Total: -40.89 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.21 Total: -10.47 kcal Total: -76.99 6.15 -70.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805338495.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.523 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds