Wall clock time and date at job start Tue Mar 31 2020 14:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00310 * 2 1 4 4 H 1.48507 * 109.46851 * 269.99685 * 3 2 1 5 5 H 1.48498 * 109.47241 * 29.99739 * 3 2 1 6 6 H 1.48501 * 109.46920 * 150.00190 * 3 2 1 7 7 C 1.38799 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99942 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47075 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47186 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47397 * 179.97438 * 12 11 10 14 14 C 1.34751 * 117.00516 * 180.02562 * 13 12 11 15 15 O 1.21514 * 119.99699 * 359.97438 * 14 13 12 16 16 C 1.47445 * 120.00260 * 179.97438 * 14 13 12 17 17 C 1.39816 * 120.07973 * 0.25063 * 16 14 13 18 18 C 1.37638 * 119.92108 * 180.23236 * 17 16 14 19 19 C 1.39153 * 120.07435 * 359.51535 * 18 17 16 20 20 N 1.39398 * 119.91726 * 180.27856 * 19 18 17 21 21 C 1.34780 * 120.00553 * 144.84104 * 20 19 18 22 22 N 1.34773 * 120.00610 * 184.58039 * 21 20 19 23 23 O 1.21582 * 119.99537 * 4.57351 * 21 20 19 24 24 C 1.39155 * 120.16330 * 0.24977 * 19 18 17 25 25 C 1.37635 * 120.07679 * 359.97438 * 24 19 18 26 26 H 0.97008 * 119.99527 * 359.97438 * 1 2 3 27 27 H 1.08989 * 109.46780 * 59.99989 * 10 9 7 28 28 H 1.09003 * 109.47083 * 299.99727 * 10 9 7 29 29 H 1.08995 * 109.47359 * 59.99469 * 11 10 9 30 30 H 1.09009 * 109.46828 * 300.00029 * 11 10 9 31 31 H 1.09003 * 109.47226 * 59.99783 * 12 11 10 32 32 H 1.08995 * 109.47203 * 299.99690 * 12 11 10 33 33 H 1.08006 * 120.03966 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.96206 * 179.78840 * 18 17 16 35 35 H 0.97006 * 120.00113 * 324.84190 * 20 19 18 36 36 H 0.96997 * 119.99444 * 359.97438 * 22 21 20 37 37 H 0.96996 * 120.00025 * 179.97438 * 22 21 20 38 38 H 1.07998 * 119.95831 * 180.02562 * 24 19 18 39 39 H 1.08000 * 120.03769 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0001 9 16 1.1290 -2.7280 0.0019 10 6 2.5156 -3.8916 0.0013 11 6 1.9790 -5.3244 0.0018 12 6 3.1509 -6.3079 0.0006 13 8 2.6417 -7.6677 0.0016 14 6 3.5514 -8.6617 0.0014 15 8 4.7379 -8.3994 -0.0001 16 6 3.1072 -10.0677 0.0029 17 6 1.7425 -10.3714 -0.0006 18 6 1.3315 -11.6850 0.0057 19 6 2.2725 -12.7101 0.0054 20 7 1.8525 -14.0393 0.0059 21 6 2.5590 -14.9696 -0.6664 22 7 2.1042 -16.2360 -0.7432 23 8 3.6066 -14.6663 -1.2038 24 6 3.6316 -12.4116 0.0040 25 6 4.0498 -11.1003 0.0023 26 1 -0.4850 0.8402 0.0004 27 1 3.1248 -3.7311 0.8907 28 1 3.1235 -3.7319 -0.8892 29 1 1.3698 -5.4845 -0.8878 30 1 1.3707 -5.4843 0.8921 31 1 3.7604 -6.1479 0.8901 32 1 3.7586 -6.1478 -0.8899 33 1 1.0116 -9.5762 -0.0041 34 1 0.2775 -11.9203 0.0064 35 1 1.0518 -14.2948 0.4901 36 1 1.2686 -16.4779 -0.3142 37 1 2.6126 -16.9053 -1.2273 38 1 4.3591 -13.2098 0.0033 39 1 5.1049 -10.8693 0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805362900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:58 Heat of formation + Delta-G solvation = -100.668589 kcal Electronic energy + Delta-G solvation = -22794.727898 eV Core-core repulsion = 19021.336101 eV Total energy + Delta-G solvation = -3773.391797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22056 -40.39461 -38.74777 -36.61757 -35.27306 -34.28400 -33.45576 -32.43505 -31.38242 -30.22675 -26.67234 -25.49756 -24.40970 -23.29954 -21.87699 -21.33159 -20.93452 -19.06105 -18.62707 -18.01679 -17.38770 -17.05838 -16.53384 -16.49862 -15.95548 -15.23251 -15.00003 -14.80809 -14.63735 -14.56282 -14.31042 -13.78631 -13.54801 -13.25715 -12.95774 -12.66518 -12.59692 -12.08825 -11.69258 -11.31105 -11.12680 -11.02044 -10.95928 -10.89949 -10.72161 -10.66865 -10.49653 -10.34726 -10.24706 -9.62262 -9.35677 -9.06704 -8.64567 -8.34668 -6.55323 -6.23973 -3.94798 0.37287 1.05234 2.11007 2.28028 2.58967 2.64533 3.22382 3.23445 3.29808 3.50729 3.56254 3.74440 4.21041 4.44055 4.58300 4.65286 4.93828 5.00723 5.11972 5.12057 5.16090 5.23027 5.39872 5.51743 5.63475 5.67310 5.75272 5.80443 5.90469 5.98483 6.06748 6.16333 6.19453 6.23376 6.46906 6.47345 6.53522 6.69601 7.16815 7.60151 7.74567 7.88781 8.35878 9.22583 10.84195 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.045237 B = 0.001624 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.816879 B =17238.514185 C =17750.077408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.074 3.926 13 O -0.352 6.352 14 C 0.508 3.492 15 O -0.509 6.509 16 C -0.141 4.141 17 C -0.039 4.039 18 C -0.161 4.161 19 C 0.193 3.807 20 N -0.684 5.684 21 C 0.705 3.295 22 N -0.860 5.860 23 O -0.571 6.571 24 C -0.135 4.135 25 C -0.035 4.035 26 H 0.268 0.732 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.410 0.590 36 H 0.400 0.600 37 H 0.420 0.580 38 H 0.149 0.851 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -33.544 1.413 33.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.268 6.268 14 C 0.353 3.647 15 O -0.399 6.399 16 C -0.143 4.143 17 C -0.057 4.057 18 C -0.181 4.181 19 C 0.097 3.903 20 N -0.332 5.332 21 C 0.404 3.596 22 N -0.428 5.428 23 O -0.447 6.447 24 C -0.155 4.155 25 C -0.054 4.054 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.246 0.754 36 H 0.228 0.772 37 H 0.253 0.747 38 H 0.167 0.833 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.428 -33.155 0.988 33.172 hybrid contribution 1.306 0.797 0.209 1.544 sum 1.734 -32.358 1.197 32.426 Atomic orbital electron populations 1.70019 1.05928 1.27384 1.47177 1.25010 0.95088 0.99102 0.94517 0.86151 0.79455 0.81450 0.78397 1.20243 1.20735 1.19654 1.22706 0.94615 0.90699 1.58644 0.90832 1.84631 1.08843 0.99229 1.96884 1.23183 1.03416 0.96347 1.03380 1.21282 0.96458 0.91553 1.04295 1.23283 0.97777 0.76374 1.02704 1.86511 1.39723 1.16879 1.83703 1.21050 0.84237 0.86474 0.72942 1.90842 1.18031 1.85024 1.46013 1.19180 0.94548 0.89844 1.10686 1.21314 0.94845 0.96464 0.93112 1.20850 0.99229 0.91647 1.06415 1.17740 0.93313 0.82257 0.96968 1.42480 1.30682 1.06230 1.53805 1.15944 0.83470 0.81081 0.79143 1.42964 1.28934 1.09677 1.61266 1.91021 1.22968 1.79668 1.50993 1.21244 0.94752 0.97007 1.02513 1.21190 1.00121 0.90796 0.93243 0.92267 0.91705 0.91711 0.90334 0.90332 0.91073 0.91066 0.83584 0.84720 0.75375 0.77222 0.74716 0.83316 0.84094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.86 9.50 30.94 0.29 -14.57 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.64 16 9 S -0.12 -3.22 21.44 -107.50 -2.30 -5.53 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 C -0.10 -1.59 5.60 -26.73 -0.15 -1.74 16 12 C 0.07 1.09 5.48 37.15 0.20 1.29 16 13 O -0.35 -5.00 9.46 -40.63 -0.38 -5.38 16 14 C 0.51 7.21 7.89 34.48 0.27 7.48 16 15 O -0.51 -8.48 16.13 -19.28 -0.31 -8.80 16 16 C -0.14 -1.62 5.87 -104.97 -0.62 -2.23 16 17 C -0.04 -0.35 9.60 -39.21 -0.38 -0.73 16 18 C -0.16 -1.15 9.94 -39.46 -0.39 -1.54 16 19 C 0.19 1.54 6.30 -83.74 -0.53 1.01 16 20 N -0.68 -3.46 5.32 -14.22 -0.08 -3.54 16 21 C 0.70 4.75 8.67 -86.92 -0.75 4.00 16 22 N -0.86 -1.85 8.88 27.63 0.25 -1.61 16 23 O -0.57 -6.53 14.59 5.29 0.08 -6.45 16 24 C -0.13 -1.33 8.66 -39.46 -0.34 -1.67 16 25 C -0.03 -0.37 9.58 -39.21 -0.38 -0.75 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.06 1.28 8.14 -51.91 -0.42 0.86 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 1.27 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.15 1.20 7.60 -52.48 -0.40 0.80 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.41 0.52 8.83 -40.82 -0.36 0.16 16 36 H 0.40 -0.47 8.85 -40.82 -0.36 -0.83 16 37 H 0.42 0.64 8.93 -40.82 -0.36 0.28 16 38 H 0.15 1.55 6.20 -52.49 -0.33 1.23 16 39 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -36.74 359.25 -8.99 -45.73 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.71 Total: -1.63 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.65 Total: -9.60 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.90 Total: -30.29 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.62 Total: -20.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.30 Total: -5.53 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.74 -8.99 -45.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805362900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.939 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds