Wall clock time and date at job start Tue Mar 31 2020 14:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47123 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47245 * 59.99891 * 3 2 1 7 7 C 1.38799 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99560 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46624 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46914 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.47064 * 180.02562 * 12 11 10 14 14 C 1.34715 * 116.99868 * 180.02562 * 13 12 11 15 15 O 1.21469 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.47738 * 119.99632 * 179.97438 * 14 13 12 17 17 C 1.39667 * 120.12188 * 359.97438 * 16 14 13 18 18 C 1.37959 * 119.99460 * 180.02562 * 17 16 14 19 19 C 1.38273 * 120.22468 * 359.74621 * 18 17 16 20 20 C 1.38947 * 120.23468 * 0.50772 * 19 18 17 21 21 N 1.39970 * 119.99738 * 179.76854 * 20 19 18 22 22 C 1.34781 * 120.00201 * 214.83304 * 21 20 19 23 23 N 1.34771 * 120.00295 * 175.38918 * 22 21 20 24 24 O 1.21595 * 119.99690 * 355.38444 * 22 21 20 25 25 C 1.38625 * 120.00458 * 359.49341 * 20 19 18 26 26 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 60.00559 * 10 9 7 28 28 H 1.08991 * 109.47388 * 299.99661 * 10 9 7 29 29 H 1.09006 * 109.47092 * 60.00169 * 11 10 9 30 30 H 1.08998 * 109.47619 * 300.00578 * 11 10 9 31 31 H 1.08995 * 109.47624 * 60.00285 * 12 11 10 32 32 H 1.09003 * 109.47488 * 299.99906 * 12 11 10 33 33 H 1.08006 * 120.00194 * 359.97438 * 17 16 14 34 34 H 1.07994 * 119.88899 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.88058 * 180.25558 * 19 18 17 36 36 H 0.97001 * 120.00393 * 34.82578 * 21 20 19 37 37 H 0.96996 * 120.00324 * 180.02562 * 23 22 21 38 38 H 0.97004 * 120.00093 * 359.72269 * 23 22 21 39 39 H 1.08000 * 120.11130 * 180.22852 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1512 -6.3077 0.0018 13 8 2.6420 -7.6675 0.0018 14 6 3.5516 -8.6612 0.0029 15 8 4.7376 -8.3989 0.0033 16 6 3.1066 -10.0700 0.0035 17 6 1.7435 -10.3744 0.0036 18 6 1.3308 -11.6908 0.0047 19 6 2.2627 -12.7124 0.0005 20 6 3.6211 -12.4203 0.0058 21 7 4.5601 -13.4583 0.0064 22 6 5.7204 -13.3171 0.6773 23 7 6.5835 -14.3492 0.7558 24 8 5.9886 -12.2583 1.2118 25 6 4.0465 -11.1010 0.0046 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7314 0.8906 28 1 3.1244 -3.7314 -0.8894 29 1 1.3703 -5.4846 -0.8886 30 1 1.3708 -5.4841 0.8913 31 1 3.7597 -6.1473 0.8918 32 1 3.7600 -6.1481 -0.8882 33 1 1.0125 -9.5793 0.0036 34 1 0.2764 -11.9243 0.0052 35 1 1.9334 -13.7410 -0.0027 36 1 4.3757 -14.2795 -0.4759 37 1 7.4184 -14.2476 1.2390 38 1 6.3678 -15.1951 0.3328 39 1 5.1019 -10.8720 0.0050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805367392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:15 Heat of formation + Delta-G solvation = -99.143303 kcal Electronic energy + Delta-G solvation = -23059.331021 eV Core-core repulsion = 19286.005366 eV Total energy + Delta-G solvation = -3773.325655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14873 -40.30838 -38.74136 -36.57432 -35.21002 -34.19621 -33.43033 -32.42199 -31.56424 -29.80175 -26.76966 -25.51421 -24.31425 -23.62381 -21.51535 -21.34035 -21.04041 -18.87228 -18.74223 -17.53257 -17.27291 -17.07476 -16.51450 -16.30907 -15.86774 -15.61498 -15.13569 -14.79885 -14.61916 -14.52165 -14.32273 -13.98142 -13.37563 -13.24334 -12.74571 -12.61139 -12.24720 -12.06953 -11.96803 -11.29891 -11.11937 -10.98780 -10.93695 -10.86196 -10.67429 -10.57891 -10.48360 -10.25121 -10.22351 -9.60104 -9.35960 -9.06289 -8.59880 -8.32563 -6.53722 -6.22813 -3.93393 0.42232 0.98276 2.17323 2.36591 2.58365 2.71247 3.22430 3.24541 3.31680 3.51624 3.57555 3.84387 4.22105 4.45688 4.51991 4.74971 4.90421 5.01154 5.08240 5.13313 5.18453 5.25302 5.40559 5.49668 5.55479 5.70762 5.82720 5.87410 5.94899 6.02794 6.08435 6.18436 6.21747 6.32373 6.48580 6.49585 6.55378 6.71783 7.27118 7.61805 7.76918 8.00651 8.37498 9.23850 10.85430 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.001789 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.876498 B =15651.706273 C =16445.433183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.115 4.115 11 C -0.097 4.097 12 C 0.073 3.927 13 O -0.350 6.350 14 C 0.506 3.494 15 O -0.501 6.501 16 C -0.103 4.103 17 C -0.075 4.075 18 C -0.113 4.113 19 C -0.113 4.113 20 C 0.146 3.854 21 N -0.684 5.684 22 C 0.702 3.298 23 N -0.861 5.861 24 O -0.568 6.568 25 C -0.058 4.058 26 H 0.267 0.733 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.409 0.591 37 H 0.420 0.580 38 H 0.398 0.602 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -34.413 -1.372 35.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.002 4.002 13 O -0.267 6.267 14 C 0.350 3.650 15 O -0.390 6.390 16 C -0.105 4.105 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.134 4.134 20 C 0.051 3.949 21 N -0.334 5.334 22 C 0.401 3.599 23 N -0.429 5.429 24 O -0.443 6.443 25 C -0.079 4.079 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.244 0.756 37 H 0.253 0.747 38 H 0.226 0.774 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.491 -33.432 -0.947 33.893 hybrid contribution 2.188 0.492 -0.217 2.253 sum 7.679 -32.940 -1.164 33.843 Atomic orbital electron populations 1.70030 1.05919 1.27268 1.47292 1.25018 0.95097 0.99123 0.94553 0.86095 0.79677 0.81765 0.77876 1.19577 1.20563 1.20552 1.22751 0.94656 0.90687 1.58469 0.90774 1.84634 1.08857 0.99241 1.96873 1.23184 1.03403 0.96339 1.03392 1.21283 0.96435 0.91525 1.04317 1.23297 0.97812 0.76320 1.02746 1.86504 1.39631 1.16847 1.83704 1.21060 0.84272 0.86457 0.73225 1.90853 1.18007 1.84902 1.45235 1.19030 0.94214 0.89749 1.07503 1.21570 0.94714 0.97565 0.95554 1.20956 0.99853 0.91787 1.00535 1.21120 0.90844 1.00316 1.01146 1.17224 0.87985 0.87072 1.02607 1.42452 1.17559 1.18994 1.54349 1.15990 0.80217 0.84472 0.79260 1.42948 1.23770 1.14522 1.61698 1.91067 1.76025 1.26247 1.50975 1.21420 1.01588 0.89814 0.95035 0.92328 0.91696 0.91706 0.90315 0.90308 0.91026 0.91062 0.83839 0.84473 0.85094 0.75565 0.74743 0.77371 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.09 7.80 -52.49 -0.41 1.68 16 9 S -0.12 -3.26 21.44 -107.50 -2.30 -5.57 16 10 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 11 C -0.10 -1.63 5.60 -26.73 -0.15 -1.78 16 12 C 0.07 1.13 5.48 37.16 0.20 1.33 16 13 O -0.35 -5.24 9.47 -40.53 -0.38 -5.62 16 14 C 0.51 7.74 7.90 34.61 0.27 8.02 16 15 O -0.50 -9.08 16.13 -19.24 -0.31 -9.39 16 16 C -0.10 -1.29 5.87 -105.01 -0.62 -1.91 16 17 C -0.08 -0.72 9.61 -39.15 -0.38 -1.10 16 18 C -0.11 -0.79 10.02 -39.67 -0.40 -1.19 16 19 C -0.11 -0.73 9.96 -39.31 -0.39 -1.12 16 20 C 0.15 1.27 6.29 -83.74 -0.53 0.75 16 21 N -0.68 -4.12 5.34 -14.26 -0.08 -4.20 16 22 C 0.70 5.80 8.68 -86.92 -0.75 5.05 16 23 N -0.86 -2.91 8.88 27.64 0.25 -2.67 16 24 O -0.57 -7.80 14.61 5.28 0.08 -7.72 16 25 C -0.06 -0.71 8.24 -38.96 -0.32 -1.03 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 28 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.14 1.27 7.61 -52.48 -0.40 0.87 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 36 H 0.41 0.75 8.84 -40.82 -0.36 0.38 16 37 H 0.42 1.22 8.93 -40.82 -0.36 0.86 16 38 H 0.40 -0.11 8.85 -40.82 -0.36 -0.47 16 39 H 0.16 2.30 5.81 -52.49 -0.30 2.00 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -37.84 359.38 -8.99 -46.83 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.72 Total: -0.63 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.65 Total: -7.85 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.90 Total: -32.19 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.62 Total: -22.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.30 Total: -5.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.84 -8.99 -46.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805367392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.314 kcal (2) G-P(sol) polarization free energy of solvation -37.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds