Wall clock time and date at job start Tue Mar 31 2020 14:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47123 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47245 * 59.99891 * 3 2 1 7 7 C 1.38799 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99702 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99560 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46624 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46914 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.47064 * 180.02562 * 12 11 10 14 14 C 1.34715 * 116.99868 * 180.02562 * 13 12 11 15 15 O 1.21469 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.47738 * 119.99632 * 179.97438 * 14 13 12 17 17 C 1.39667 * 120.12188 * 359.97438 * 16 14 13 18 18 C 1.37959 * 119.99460 * 180.02562 * 17 16 14 19 19 C 1.38273 * 120.22468 * 359.74621 * 18 17 16 20 20 C 1.38947 * 120.23468 * 0.50772 * 19 18 17 21 21 N 1.39970 * 119.99738 * 179.76854 * 20 19 18 22 22 C 1.34781 * 120.00201 * 214.83304 * 21 20 19 23 23 N 1.34771 * 120.00295 * 175.38918 * 22 21 20 24 24 O 1.21595 * 119.99690 * 355.38444 * 22 21 20 25 25 C 1.38625 * 120.00458 * 359.49341 * 20 19 18 26 26 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 60.00559 * 10 9 7 28 28 H 1.08991 * 109.47388 * 299.99661 * 10 9 7 29 29 H 1.09006 * 109.47092 * 60.00169 * 11 10 9 30 30 H 1.08998 * 109.47619 * 300.00578 * 11 10 9 31 31 H 1.08995 * 109.47624 * 60.00285 * 12 11 10 32 32 H 1.09003 * 109.47488 * 299.99906 * 12 11 10 33 33 H 1.08006 * 120.00194 * 359.97438 * 17 16 14 34 34 H 1.07994 * 119.88899 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.88058 * 180.25558 * 19 18 17 36 36 H 0.97001 * 120.00393 * 34.82578 * 21 20 19 37 37 H 0.96996 * 120.00324 * 180.02562 * 23 22 21 38 38 H 0.97004 * 120.00093 * 359.72269 * 23 22 21 39 39 H 1.08000 * 120.11130 * 180.22852 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9792 -5.3243 0.0012 12 6 3.1512 -6.3077 0.0018 13 8 2.6420 -7.6675 0.0018 14 6 3.5516 -8.6612 0.0029 15 8 4.7376 -8.3989 0.0033 16 6 3.1066 -10.0700 0.0035 17 6 1.7435 -10.3744 0.0036 18 6 1.3308 -11.6908 0.0047 19 6 2.2627 -12.7124 0.0005 20 6 3.6211 -12.4203 0.0058 21 7 4.5601 -13.4583 0.0064 22 6 5.7204 -13.3171 0.6773 23 7 6.5835 -14.3492 0.7558 24 8 5.9886 -12.2583 1.2118 25 6 4.0465 -11.1010 0.0046 26 1 -0.4850 0.8401 0.0004 27 1 3.1244 -3.7314 0.8906 28 1 3.1244 -3.7314 -0.8894 29 1 1.3703 -5.4846 -0.8886 30 1 1.3708 -5.4841 0.8913 31 1 3.7597 -6.1473 0.8918 32 1 3.7600 -6.1481 -0.8882 33 1 1.0125 -9.5793 0.0036 34 1 0.2764 -11.9243 0.0052 35 1 1.9334 -13.7410 -0.0027 36 1 4.3757 -14.2795 -0.4759 37 1 7.4184 -14.2476 1.2390 38 1 6.3678 -15.1951 0.3328 39 1 5.1019 -10.8720 0.0050 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805367392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:14 Heat of formation + Delta-G solvation = -126.681409 kcal Electronic energy + Delta-G solvation = -23060.525163 eV Core-core repulsion = 19286.005366 eV Total energy + Delta-G solvation = -3774.519797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92593 -41.33037 -39.49427 -37.83540 -35.91997 -34.95270 -34.66243 -34.57542 -32.32553 -30.46884 -28.28650 -27.53672 -25.33989 -24.26647 -22.77835 -22.21210 -21.97197 -19.73390 -19.43368 -19.36060 -18.35588 -17.87818 -17.78448 -17.05695 -16.90759 -16.53678 -16.43767 -16.03267 -15.99542 -15.77745 -15.20834 -14.99277 -14.62509 -14.31876 -14.27011 -13.82648 -13.70820 -13.18239 -12.96845 -12.88227 -12.75925 -12.61982 -12.42758 -12.40741 -11.83393 -11.65658 -11.56096 -11.45166 -11.28519 -11.16582 -10.76833 -10.37313 -10.07795 -9.23605 -8.68387 -8.39006 -6.15288 -0.38755 0.28151 1.23451 1.38026 1.38169 1.39941 1.50908 1.70739 1.83998 2.02081 2.26016 2.77337 2.95499 3.26763 3.45805 3.54927 3.82118 3.91021 3.95337 4.10012 4.11798 4.17455 4.29803 4.34000 4.41952 4.54338 4.66784 4.86004 4.99995 5.03764 5.14918 5.29465 5.30565 5.35389 5.39643 5.41257 5.79842 5.88528 5.93119 6.17353 6.58408 6.93651 7.03667 7.50360 8.70636 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.031960 B = 0.001789 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.876498 B =15651.706273 C =16445.433183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.995 3.005 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.073 0.927 9 S -0.179 6.179 10 C -0.094 4.094 11 C -0.083 4.083 12 C 0.079 3.921 13 O -0.346 6.346 14 C 0.504 3.496 15 O -0.542 6.542 16 C -0.131 4.131 17 C -0.078 4.078 18 C -0.102 4.102 19 C -0.089 4.089 20 C 0.141 3.859 21 N -0.668 5.668 22 C 0.694 3.306 23 N -0.836 5.836 24 O -0.629 6.629 25 C -0.083 4.083 26 H 0.272 0.728 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.432 0.568 37 H 0.424 0.576 38 H 0.419 0.581 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -37.027 -1.696 37.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.690 4.690 8 H 0.091 0.909 9 S 0.049 5.951 10 C -0.242 4.242 11 C -0.121 4.121 12 C 0.004 3.996 13 O -0.262 6.262 14 C 0.351 3.649 15 O -0.433 6.433 16 C -0.133 4.133 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.109 4.109 20 C 0.046 3.954 21 N -0.319 5.319 22 C 0.392 3.608 23 N -0.406 5.406 24 O -0.510 6.510 25 C -0.104 4.104 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.272 0.728 37 H 0.257 0.743 38 H 0.251 0.749 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.731 -36.144 -1.304 36.476 hybrid contribution 2.412 1.096 -0.123 2.652 sum 7.143 -35.048 -1.428 35.797 Atomic orbital electron populations 1.70146 1.07590 1.28580 1.47862 1.26048 0.96059 1.03036 0.93685 0.84963 0.78335 0.76674 0.78370 1.18898 1.19542 1.19581 1.23100 0.94851 0.92048 1.59023 0.90918 1.84571 1.12805 1.00627 1.97050 1.23077 1.00927 0.96627 1.03611 1.21094 0.96740 0.89548 1.04757 1.23090 0.96991 0.76676 1.02880 1.86492 1.39487 1.16514 1.83703 1.21729 0.83768 0.87526 0.71895 1.90822 1.19545 1.85479 1.47476 1.18977 0.95804 0.87769 1.10734 1.21735 0.93153 0.99411 0.95375 1.21424 1.01904 0.90383 0.98303 1.21609 0.89124 1.02523 0.97678 1.17383 0.89637 0.86229 1.02168 1.42244 1.16501 1.19191 1.53941 1.16306 0.81011 0.84401 0.79078 1.42735 1.22855 1.14259 1.60743 1.91045 1.77379 1.28947 1.53589 1.21254 0.99885 0.91822 0.97434 0.91853 0.91506 0.91370 0.89799 0.89978 0.91143 0.90862 0.83365 0.80632 0.80454 0.72827 0.74281 0.74890 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.65 0.29 -54.53 16 2 C 0.02 0.97 5.49 84.86 0.47 1.44 16 3 Si 0.99 44.57 29.55 68.60 2.03 46.60 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.77 9.50 67.95 0.65 -31.12 16 8 H 0.07 4.13 7.80 -2.91 -0.02 4.11 16 9 S -0.18 -9.60 21.44 -56.49 -1.21 -10.81 16 10 C -0.09 -3.85 5.67 71.98 0.41 -3.44 16 11 C -0.08 -2.78 5.60 30.59 0.17 -2.61 16 12 C 0.08 2.47 5.48 71.98 0.39 2.87 16 13 O -0.35 -10.54 9.47 -56.25 -0.53 -11.07 16 14 C 0.50 16.28 7.90 70.33 0.56 16.84 16 15 O -0.54 -21.13 16.13 19.94 0.32 -20.81 16 16 C -0.13 -3.38 5.87 -20.11 -0.12 -3.50 16 17 C -0.08 -1.39 9.61 22.55 0.22 -1.17 16 18 C -0.10 -1.03 10.02 22.21 0.22 -0.81 16 19 C -0.09 -0.77 9.96 22.45 0.22 -0.55 16 20 C 0.14 2.25 6.29 38.10 0.24 2.49 16 21 N -0.67 -6.80 5.34 -317.27 -1.70 -8.50 16 22 C 0.69 11.17 8.68 179.05 1.55 12.72 16 23 N -0.84 -4.46 8.88 -184.74 -1.64 -6.10 16 24 O -0.63 -18.35 14.61 -4.01 -0.06 -18.41 16 25 C -0.08 -2.13 8.24 22.67 0.19 -1.94 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.07 2.71 8.14 -2.40 -0.02 2.69 16 28 H 0.07 2.75 8.14 -2.40 -0.02 2.73 16 29 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.15 2.42 7.61 -2.91 -0.02 2.40 16 34 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 35 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.43 0.11 8.84 -92.71 -0.82 -0.71 16 37 H 0.42 2.06 8.93 -92.71 -0.83 1.24 16 38 H 0.42 -1.33 8.85 -92.70 -0.82 -2.15 16 39 H 0.12 3.94 5.81 -2.91 -0.02 3.92 16 Total: -1.00 -87.39 359.38 1.32 -86.07 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -1.34 Total: 6.32 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.17 Total: -8.77 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -3.05 Total: -69.12 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.27 Total: -50.29 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: -9.60 SS G_CDS: -1.21 Total: -10.81 kcal Total: -87.39 1.32 -86.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805367392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.611 kcal (2) G-P(sol) polarization free energy of solvation -87.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds