Wall clock time and date at job start Tue Mar 31 2020 13:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00147 * 2 1 4 4 H 1.48505 * 109.47166 * 239.99789 * 3 2 1 5 5 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47080 * 120.00302 * 3 2 1 7 7 C 1.38803 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00189 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47026 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47043 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.46845 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99748 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99990 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.47159 * 179.97438 * 16 14 13 18 18 C 1.35663 * 117.00012 * 179.97438 * 17 16 14 19 19 C 1.39081 * 119.88517 * 0.25531 * 18 17 16 20 20 C 1.37112 * 120.11570 * 180.25506 * 19 18 17 21 21 C 1.40043 * 119.88015 * 359.46625 * 20 19 18 22 22 C 1.46865 * 120.11149 * 180.29875 * 21 20 19 23 23 O 1.21289 * 120.00170 * 0.02562 * 22 21 20 24 24 C 1.40036 * 119.77267 * 0.28070 * 21 20 19 25 25 C 1.37118 * 119.88298 * 359.97438 * 24 21 20 26 26 H 0.97000 * 119.99973 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47062 * 60.00001 * 10 9 7 28 28 H 1.09000 * 109.47093 * 299.99695 * 10 9 7 29 29 H 1.09001 * 109.46770 * 59.99774 * 11 10 9 30 30 H 1.08992 * 109.47082 * 300.00063 * 11 10 9 31 31 H 1.09000 * 109.46979 * 60.00029 * 12 11 10 32 32 H 1.09006 * 109.47338 * 300.00145 * 12 11 10 33 33 H 1.08998 * 109.47248 * 59.99932 * 16 14 13 34 34 H 1.09000 * 109.46724 * 299.99563 * 16 14 13 35 35 H 1.07998 * 119.94116 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.06260 * 179.74913 * 20 19 18 37 37 H 1.08003 * 119.99729 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.05599 * 180.02562 * 24 21 20 39 39 H 1.08002 * 119.93856 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1512 -6.3078 -0.0018 13 8 2.6420 -7.6675 -0.0031 14 6 3.5483 -8.6577 -0.0032 15 8 4.7281 -8.3968 -0.0028 16 6 3.0944 -10.0947 -0.0050 17 8 4.2357 -10.9547 -0.0055 18 6 4.0001 -12.2908 -0.0065 19 6 2.6922 -12.7638 -0.0125 20 6 2.4486 -14.1131 -0.0084 21 6 3.5196 -15.0154 -0.0093 22 6 3.2645 -16.4617 -0.0115 23 8 2.1248 -16.8765 -0.0129 24 6 4.8346 -14.5338 -0.0086 25 6 5.0672 -13.1825 -0.0075 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8906 29 1 1.3708 -5.4840 -0.8914 30 1 1.3704 -5.4847 0.8885 31 1 3.7599 -6.1482 0.8882 32 1 3.7598 -6.1473 -0.8918 33 1 2.4958 -10.2855 -0.8957 34 1 2.4943 -10.2872 0.8843 35 1 1.8670 -12.0671 -0.0168 36 1 1.4326 -14.4795 -0.0089 37 1 4.0919 -17.1559 -0.0119 38 1 5.6639 -15.2256 -0.0098 39 1 6.0810 -12.8102 -0.0074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805385041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:33 Heat of formation + Delta-G solvation = -139.316604 kcal Electronic energy + Delta-G solvation = -22376.901484 eV Core-core repulsion = 18569.541032 eV Total energy + Delta-G solvation = -3807.360452 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20126 -40.44691 -39.43629 -37.69141 -36.74783 -33.65296 -32.48061 -31.91015 -31.34967 -29.46775 -26.53101 -25.48434 -24.93484 -23.49842 -21.64962 -21.43226 -21.19921 -19.13172 -17.85206 -17.56466 -17.38825 -17.37463 -16.82846 -16.28528 -16.15870 -15.45729 -14.94145 -14.84943 -14.80369 -14.58323 -14.42336 -14.05950 -13.73512 -13.35009 -13.27368 -13.08866 -12.72922 -12.72350 -12.18812 -11.69844 -11.54240 -11.43048 -11.23606 -11.04618 -10.98815 -10.76304 -10.65911 -10.41390 -10.29745 -9.73059 -9.69487 -9.10363 -8.88118 -8.41312 -6.61093 -6.28210 -3.99887 0.13329 0.76647 1.65439 1.83336 1.93676 2.96329 3.19626 3.20568 3.22823 3.25287 3.48126 3.76601 4.06001 4.16543 4.17585 4.31227 4.41518 4.43552 4.62271 4.70162 4.89158 4.95174 5.00180 5.05748 5.08418 5.31240 5.37818 5.39884 5.55043 5.66216 5.68638 5.77231 5.77441 6.00565 6.04187 6.26040 6.36622 6.58463 6.62613 6.94418 7.43621 7.55289 8.30961 9.18126 10.79870 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.048092 B = 0.001455 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.079131 B =19239.250426 C =19790.277055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.115 4.115 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.350 6.350 14 C 0.463 3.537 15 O -0.486 6.486 16 C 0.065 3.935 17 O -0.288 6.288 18 C 0.168 3.832 19 C -0.226 4.226 20 C -0.015 4.015 21 C -0.237 4.237 22 C 0.386 3.614 23 O -0.467 6.467 24 C -0.026 4.026 25 C -0.162 4.162 26 H 0.269 0.731 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -30.355 -0.015 31.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.669 4.669 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.267 6.267 14 C 0.303 3.697 15 O -0.372 6.372 16 C -0.011 4.011 17 O -0.201 6.201 18 C 0.122 3.878 19 C -0.244 4.244 20 C -0.033 4.033 21 C -0.238 4.238 22 C 0.245 3.755 23 O -0.340 6.340 24 C -0.044 4.044 25 C -0.181 4.181 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.121 0.879 38 H 0.159 0.841 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.821 -30.390 -0.017 31.146 hybrid contribution 1.910 1.576 0.003 2.476 sum 8.730 -28.815 -0.015 30.108 Atomic orbital electron populations 1.70002 1.05937 1.27578 1.46940 1.25011 0.95090 0.99115 0.94439 0.86203 0.79238 0.81085 0.78904 1.19892 1.20761 1.19889 1.22657 0.94569 0.90669 1.58971 0.90868 1.84650 1.08634 0.99218 1.96903 1.23187 1.03566 0.96225 1.03431 1.21304 0.96332 0.91532 1.04469 1.23390 0.98033 0.75599 1.02986 1.86422 1.39688 1.17029 1.83568 1.22699 0.85000 0.87931 0.74056 1.90734 1.18334 1.84639 1.43466 1.21998 0.87911 0.85180 1.05972 1.86058 1.32631 1.13776 1.87590 1.19401 0.93921 0.82175 0.92315 1.21220 0.95633 0.97301 1.10289 1.21124 0.99590 0.91827 0.90776 1.20886 0.94151 0.96792 1.11956 1.23920 0.92072 0.89459 0.70050 1.90544 1.26879 1.81280 1.35342 1.21090 0.95971 0.94638 0.92748 1.20332 0.98626 0.91819 1.07303 0.92153 0.91658 0.91663 0.90210 0.90206 0.90796 0.90802 0.87074 0.87068 0.84385 0.84463 0.87946 0.84077 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.65 9.50 30.94 0.29 -14.36 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.12 -3.10 21.44 -107.50 -2.30 -5.41 16 10 C -0.12 -2.22 5.67 37.16 0.21 -2.01 16 11 C -0.10 -1.49 5.60 -26.73 -0.15 -1.64 16 12 C 0.07 0.99 5.47 37.16 0.20 1.19 16 13 O -0.35 -4.24 10.22 -39.27 -0.40 -4.64 16 14 C 0.46 5.33 8.03 36.00 0.29 5.62 16 15 O -0.49 -7.32 16.25 -25.48 -0.41 -7.73 16 16 C 0.07 0.49 5.32 36.00 0.19 0.68 16 17 O -0.29 -2.70 9.65 -38.64 -0.37 -3.07 16 18 C 0.17 1.29 6.70 -38.96 -0.26 1.02 16 19 C -0.23 -1.45 8.99 -39.68 -0.36 -1.80 16 20 C -0.01 -0.10 9.57 -39.31 -0.38 -0.48 16 21 C -0.24 -1.39 5.87 -105.06 -0.62 -2.01 16 22 C 0.39 2.12 11.44 34.22 0.39 2.51 16 23 O -0.47 -4.52 17.16 5.55 0.10 -4.42 16 24 C -0.03 -0.12 9.77 -39.31 -0.38 -0.50 16 25 C -0.16 -1.03 9.95 -39.68 -0.39 -1.42 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.11 0.55 7.64 -51.93 -0.40 0.15 16 34 H 0.11 0.55 7.66 -51.93 -0.40 0.15 16 35 H 0.14 0.61 6.27 -52.49 -0.33 0.28 16 36 H 0.14 0.88 7.64 -52.49 -0.40 0.48 16 37 H 0.10 0.15 8.06 -52.48 -0.42 -0.27 16 38 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -35.28 364.51 -8.12 -43.40 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.87 Total: -3.76 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.05 Total: -11.26 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.73 Total: -24.81 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -1.09 Total: -19.86 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.30 Total: -5.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.28 -8.12 -43.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.919 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds