Wall clock time and date at job start Tue Mar 31 2020 13:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00147 * 2 1 4 4 H 1.48505 * 109.47166 * 239.99789 * 3 2 1 5 5 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47080 * 120.00302 * 3 2 1 7 7 C 1.38803 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00189 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47026 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47043 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.46845 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99748 * 180.02562 * 13 12 11 15 15 O 1.20826 * 119.99802 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99990 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.47159 * 179.97438 * 16 14 13 18 18 C 1.35663 * 117.00012 * 179.97438 * 17 16 14 19 19 C 1.39081 * 119.88517 * 0.25531 * 18 17 16 20 20 C 1.37112 * 120.11570 * 180.25506 * 19 18 17 21 21 C 1.40043 * 119.88015 * 359.46625 * 20 19 18 22 22 C 1.46865 * 120.11149 * 180.29875 * 21 20 19 23 23 O 1.21289 * 120.00170 * 0.02562 * 22 21 20 24 24 C 1.40036 * 119.77267 * 0.28070 * 21 20 19 25 25 C 1.37118 * 119.88298 * 359.97438 * 24 21 20 26 26 H 0.97000 * 119.99973 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47062 * 60.00001 * 10 9 7 28 28 H 1.09000 * 109.47093 * 299.99695 * 10 9 7 29 29 H 1.09001 * 109.46770 * 59.99774 * 11 10 9 30 30 H 1.08992 * 109.47082 * 300.00063 * 11 10 9 31 31 H 1.09000 * 109.46979 * 60.00029 * 12 11 10 32 32 H 1.09006 * 109.47338 * 300.00145 * 12 11 10 33 33 H 1.08998 * 109.47248 * 59.99932 * 16 14 13 34 34 H 1.09000 * 109.46724 * 299.99563 * 16 14 13 35 35 H 1.07998 * 119.94116 * 0.02562 * 19 18 17 36 36 H 1.08002 * 120.06260 * 179.74913 * 20 19 18 37 37 H 1.08003 * 119.99729 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.05599 * 180.02562 * 24 21 20 39 39 H 1.08002 * 119.93856 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9792 -5.3243 -0.0012 12 6 3.1512 -6.3078 -0.0018 13 8 2.6420 -7.6675 -0.0031 14 6 3.5483 -8.6577 -0.0032 15 8 4.7281 -8.3968 -0.0028 16 6 3.0944 -10.0947 -0.0050 17 8 4.2357 -10.9547 -0.0055 18 6 4.0001 -12.2908 -0.0065 19 6 2.6922 -12.7638 -0.0125 20 6 2.4486 -14.1131 -0.0084 21 6 3.5196 -15.0154 -0.0093 22 6 3.2645 -16.4617 -0.0115 23 8 2.1248 -16.8765 -0.0129 24 6 4.8346 -14.5338 -0.0086 25 6 5.0672 -13.1825 -0.0075 26 1 -0.4850 0.8400 0.0004 27 1 3.1244 -3.7314 0.8894 28 1 3.1244 -3.7314 -0.8906 29 1 1.3708 -5.4840 -0.8914 30 1 1.3704 -5.4847 0.8885 31 1 3.7599 -6.1482 0.8882 32 1 3.7598 -6.1473 -0.8918 33 1 2.4958 -10.2855 -0.8957 34 1 2.4943 -10.2872 0.8843 35 1 1.8670 -12.0671 -0.0168 36 1 1.4326 -14.4795 -0.0089 37 1 4.0919 -17.1559 -0.0119 38 1 5.6639 -15.2256 -0.0098 39 1 6.0810 -12.8102 -0.0074 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805385041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:32 Heat of formation + Delta-G solvation = -159.844070 kcal Electronic energy + Delta-G solvation = -22377.791621 eV Core-core repulsion = 18569.541032 eV Total energy + Delta-G solvation = -3808.250589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92761 -41.16094 -39.99811 -38.30697 -37.68536 -34.96612 -34.59146 -32.35515 -31.85391 -30.15642 -28.06215 -27.28277 -25.41869 -24.05355 -22.80260 -22.25422 -21.79466 -19.73656 -19.55625 -18.51067 -18.23309 -18.22246 -17.49879 -16.98040 -16.90106 -16.87476 -16.24080 -15.86436 -15.84561 -15.37544 -15.23610 -14.95025 -14.48874 -14.37081 -14.24956 -13.91691 -13.80487 -13.54592 -13.50275 -13.14119 -12.94151 -12.66457 -12.44450 -12.42670 -12.21500 -12.02427 -11.71185 -11.57258 -11.45332 -11.14530 -10.75803 -10.37308 -10.14515 -9.37583 -8.68620 -8.38645 -6.15232 -0.31806 0.34458 0.86788 0.94284 1.32016 1.40763 1.47588 1.50656 1.70353 2.25812 2.37735 2.79979 2.96096 3.24262 3.37761 3.44221 3.68744 3.81839 3.82065 3.92939 3.94338 3.95769 4.12371 4.22351 4.30770 4.30963 4.46492 4.56362 4.58290 4.67117 4.98349 5.00205 5.06541 5.13348 5.22331 5.31778 5.35005 5.39079 5.59361 6.13039 6.16766 6.51557 6.55492 7.03958 8.70353 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.048092 B = 0.001455 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.079131 B =19239.250426 C =19790.277055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.018 3.982 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.074 0.926 9 S -0.183 6.183 10 C -0.094 4.094 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.347 6.347 14 C 0.464 3.536 15 O -0.526 6.526 16 C 0.068 3.932 17 O -0.313 6.313 18 C 0.151 3.849 19 C -0.227 4.227 20 C -0.032 4.032 21 C -0.247 4.247 22 C 0.393 3.607 23 O -0.515 6.515 24 C -0.012 4.012 25 C -0.176 4.176 26 H 0.272 0.728 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.180 0.820 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.588 -31.646 -0.017 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.691 4.691 8 H 0.092 0.908 9 S 0.046 5.954 10 C -0.242 4.242 11 C -0.125 4.125 12 C 0.006 3.994 13 O -0.264 6.264 14 C 0.307 3.693 15 O -0.414 6.414 16 C -0.007 4.007 17 O -0.226 6.226 18 C 0.105 3.895 19 C -0.245 4.245 20 C -0.050 4.050 21 C -0.248 4.248 22 C 0.256 3.744 23 O -0.392 6.392 24 C -0.030 4.030 25 C -0.194 4.194 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.197 0.803 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.224 -31.701 -0.019 32.750 hybrid contribution 1.518 1.847 0.003 2.391 sum 9.742 -29.854 -0.016 31.403 Atomic orbital electron populations 1.70132 1.07632 1.28689 1.47757 1.26032 0.96008 1.03018 0.93662 0.85088 0.77965 0.76186 0.79331 1.18987 1.19951 1.18977 1.23038 0.94865 0.92030 1.59188 0.90790 1.84607 1.13001 1.00750 1.97074 1.23081 1.00851 0.96597 1.03716 1.21115 0.96960 0.89631 1.04745 1.23111 0.96788 0.76181 1.03290 1.86410 1.39787 1.16610 1.83590 1.23509 0.84319 0.89097 0.72377 1.90719 1.19962 1.85245 1.45507 1.22204 0.87680 0.82190 1.08624 1.86009 1.33692 1.14706 1.88208 1.19627 0.94807 0.81590 0.93480 1.21362 0.95766 0.97532 1.09889 1.21278 0.99949 0.92343 0.91454 1.21164 0.94595 0.97268 1.11800 1.24595 0.92325 0.89759 0.67718 1.90541 1.29017 1.81791 1.37811 1.21439 0.96470 0.94459 0.90620 1.20619 0.98742 0.92555 1.07522 0.91891 0.91311 0.91318 0.89975 0.89969 0.90572 0.90579 0.84265 0.84260 0.82727 0.84890 0.83132 0.80316 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.85 13.22 21.65 0.29 -53.56 16 2 C 0.02 1.01 5.49 84.86 0.47 1.48 16 3 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -30.84 9.50 67.96 0.65 -30.20 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.18 -9.43 21.44 -56.49 -1.21 -10.64 16 10 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 11 C -0.09 -2.55 5.60 30.60 0.17 -2.38 16 12 C 0.08 2.07 5.47 71.98 0.39 2.46 16 13 O -0.35 -7.89 10.22 -51.46 -0.53 -8.41 16 14 C 0.46 10.14 8.03 71.24 0.57 10.72 16 15 O -0.53 -15.63 16.25 28.39 0.46 -15.17 16 16 C 0.07 0.89 5.32 71.24 0.38 1.27 16 17 O -0.31 -5.52 9.65 -70.72 -0.68 -6.21 16 18 C 0.15 2.12 6.70 22.67 0.15 2.27 16 19 C -0.23 -2.61 8.99 22.21 0.20 -2.41 16 20 C -0.03 -0.40 9.57 22.44 0.21 -0.18 16 21 C -0.25 -2.47 5.87 -20.15 -0.12 -2.59 16 22 C 0.39 3.53 11.44 70.08 0.80 4.33 16 23 O -0.51 -9.64 17.16 -3.06 -0.05 -9.70 16 24 C -0.01 -0.08 9.77 22.44 0.22 0.14 16 25 C -0.18 -1.95 9.95 22.21 0.22 -1.73 16 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 28 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 32 H 0.08 1.92 8.13 -2.38 -0.02 1.90 16 33 H 0.14 1.03 7.64 -2.39 -0.02 1.01 16 34 H 0.14 1.03 7.66 -2.39 -0.02 1.01 16 35 H 0.16 1.07 6.27 -2.91 -0.02 1.05 16 36 H 0.13 1.70 7.64 -2.91 -0.02 1.68 16 37 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 38 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -78.45 364.51 6.09 -72.35 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.06 Total: 5.98 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.73 Total: -19.97 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.29 Total: -53.56 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.80 Total: -39.49 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.21 Total: -10.64 kcal Total: -78.45 6.09 -72.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805385041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.490 kcal (2) G-P(sol) polarization free energy of solvation -78.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds