Wall clock time and date at job start Tue Mar 31 2020 14:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34712 * 116.99537 * 2 1 4 4 O 1.21465 * 120.00301 * 0.02562 * 3 2 1 5 5 C 1.47739 * 119.99689 * 179.97438 * 3 2 1 6 6 C 1.39771 * 120.07427 * 0.02562 * 5 3 2 7 7 C 1.38053 * 120.14592 * 180.02562 * 6 5 3 8 8 C 1.38092 * 120.30718 * 359.95272 * 7 6 5 9 9 C 1.39711 * 120.15322 * 0.02562 * 8 7 6 10 10 C 1.47754 * 120.07872 * 179.97438 * 9 8 7 11 11 O 1.21463 * 119.99961 * 180.02562 * 10 9 8 12 12 O 1.34710 * 119.99688 * 0.02562 * 10 9 8 13 13 C 1.45198 * 116.99852 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46884 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 S 1.81002 * 109.47152 * 179.97438 * 15 14 13 17 17 C 1.76198 * 100.00092 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99945 * 359.97438 * 17 16 15 19 19 C 1.38802 * 120.00251 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99707 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00286 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47120 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47665 * 119.99602 * 21 19 17 24 24 H 1.48503 * 109.46798 * 239.99988 * 21 19 17 25 25 C 1.39335 * 120.07751 * 180.23088 * 5 3 2 26 26 H 1.08996 * 109.47116 * 299.99993 * 1 2 3 27 27 H 1.08993 * 109.46973 * 59.99982 * 1 2 3 28 28 H 1.09003 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.92674 * 359.97438 * 6 5 3 30 30 H 1.08001 * 119.84465 * 179.97438 * 7 6 5 31 31 H 1.08006 * 119.92094 * 180.02562 * 8 7 6 32 32 H 1.09002 * 109.47379 * 59.99614 * 13 12 10 33 33 H 1.09001 * 109.46782 * 299.99697 * 13 12 10 34 34 H 1.09001 * 109.47194 * 299.99482 * 14 13 12 35 35 H 1.08992 * 109.47399 * 59.99654 * 14 13 12 36 36 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 37 37 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 38 38 H 0.96996 * 119.99880 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.14989 * 0.02562 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 0.0006 6 6 4.3017 0.1065 0.0006 7 6 5.6805 0.1771 0.0016 8 6 6.3155 1.4033 0.0017 9 6 5.5654 2.5820 0.0013 10 6 6.2466 3.8932 0.0020 11 8 5.5931 4.9170 0.0020 12 8 7.5924 3.9530 0.0025 13 6 8.1934 5.2747 0.0037 14 6 9.7176 5.1418 0.0048 15 6 10.3510 6.5346 0.0067 16 16 12.1542 6.3774 0.0088 17 6 12.6097 8.0794 0.0100 18 1 11.8458 8.8429 0.0089 19 6 13.9503 8.4391 0.0111 20 7 14.8813 7.5086 0.0119 21 14 14.4332 10.2436 0.0131 22 1 13.2087 11.0837 0.0125 23 1 15.2366 10.5398 1.2264 24 1 15.2382 10.5418 -1.1986 25 6 4.1731 2.5183 0.0054 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.8115 -0.8558 0.0006 30 1 6.2651 -0.7310 0.0021 31 1 7.3945 1.4512 0.0022 32 1 7.8757 5.8176 0.8939 33 1 7.8764 5.8188 -0.8860 34 1 10.0343 4.5979 0.8947 35 1 10.0356 4.5988 -0.8852 36 1 10.0344 7.0789 -0.8830 37 1 10.0329 7.0772 0.8969 38 1 15.8182 7.7600 0.0130 39 1 3.5885 3.4264 0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805406847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:54 Heat of formation + Delta-G solvation = -176.473542 kcal Electronic energy + Delta-G solvation = -22799.426496 eV Core-core repulsion = 18990.454798 eV Total energy + Delta-G solvation = -3808.971697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.94967 -41.45413 -39.67428 -37.85757 -37.59223 -34.95295 -34.58824 -33.01822 -32.34692 -28.84756 -28.23857 -27.52344 -25.43329 -25.06696 -22.75732 -22.48083 -21.82193 -19.75222 -19.41684 -18.56170 -18.21816 -17.80850 -17.47503 -17.26684 -17.10321 -16.90211 -16.18591 -16.03763 -15.81837 -15.22567 -14.92062 -14.70315 -14.62565 -14.25432 -14.24069 -13.81726 -13.56524 -13.18618 -13.10225 -13.06824 -12.96760 -12.63675 -12.56141 -12.42311 -12.38603 -11.87839 -11.86612 -11.75222 -11.55496 -11.46192 -11.16132 -10.36114 -10.34281 -10.25675 -8.67432 -8.38704 -6.14610 -0.63933 -0.30407 1.12996 1.18571 1.35039 1.38262 1.49447 1.54589 1.60107 1.83580 2.26554 2.61435 2.96075 3.26128 3.40230 3.54801 3.70357 3.84371 3.90750 3.94956 3.98100 4.11862 4.20412 4.28770 4.31722 4.32446 4.40358 4.58759 4.68502 4.71377 4.75774 4.97720 5.01973 5.07199 5.09979 5.16673 5.24524 5.33454 5.40220 5.59623 6.17706 6.51759 6.54430 7.04341 8.70841 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.043459 B = 0.001664 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.130684 B =16827.556612 C =17440.635336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.512 3.488 4 O -0.539 6.539 5 C -0.152 4.152 6 C -0.011 4.011 7 C -0.127 4.127 8 C -0.018 4.018 9 C -0.150 4.150 10 C 0.508 3.492 11 O -0.538 6.538 12 O -0.344 6.344 13 C 0.080 3.920 14 C -0.084 4.084 15 C -0.094 4.094 16 S -0.180 6.180 17 C -0.542 4.542 18 H 0.073 0.927 19 C 0.018 3.982 20 N -0.905 5.905 21 Si 0.993 3.007 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.006 4.006 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.140 0.860 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.272 0.728 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.135 -21.702 -0.021 33.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.358 3.642 4 O -0.431 6.431 5 C -0.153 4.153 6 C -0.029 4.029 7 C -0.144 4.144 8 C -0.036 4.036 9 C -0.151 4.151 10 C 0.355 3.645 11 O -0.429 6.429 12 O -0.260 6.260 13 C 0.005 3.995 14 C -0.122 4.122 15 C -0.243 4.243 16 S 0.049 5.951 17 C -0.690 4.690 18 H 0.091 0.909 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.815 3.185 22 H -0.189 1.189 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.025 4.025 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.194 0.806 30 H 0.202 0.798 31 H 0.181 0.819 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.672 -22.066 -0.020 33.100 hybrid contribution -0.641 2.921 0.000 2.990 sum -25.312 -19.145 -0.019 31.737 Atomic orbital electron populations 1.23636 0.74010 1.06195 1.02608 1.86508 1.25345 1.30892 1.83708 1.21273 0.89258 0.81717 0.71919 1.90861 1.67517 1.37350 1.47327 1.18955 0.89240 0.94818 1.12278 1.22138 0.94342 0.98134 0.88279 1.21670 0.94089 0.98828 0.99834 1.22138 1.02221 0.90760 0.88523 1.18928 0.92754 0.90996 1.12424 1.21475 0.81055 0.89976 0.72035 1.90846 1.67055 1.37710 1.47333 1.86472 1.20815 1.35137 1.83592 1.23107 0.92688 0.80634 1.03099 1.21100 0.90820 0.95505 1.04820 1.23084 0.97784 0.99812 1.03625 1.84567 1.00361 1.13131 1.97050 1.23102 0.95319 0.91624 1.58963 0.90911 1.26023 0.95259 1.03742 0.93703 1.70142 1.01073 1.35066 1.47901 0.84984 0.78415 0.76757 0.78331 1.18865 1.19632 1.19640 1.21196 0.92910 0.97945 0.90446 0.91989 0.91981 0.84206 0.80624 0.79787 0.81871 0.90789 0.90784 0.89843 0.89837 0.91431 0.91430 0.91878 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.59 9.81 -56.22 -0.55 -5.14 16 3 C 0.51 9.71 7.90 70.33 0.56 10.27 16 4 O -0.54 -14.12 16.13 19.95 0.32 -13.79 16 5 C -0.15 -2.50 5.87 -20.13 -0.12 -2.62 16 6 C -0.01 -0.10 9.61 22.60 0.22 0.12 16 7 C -0.13 -0.88 10.02 22.19 0.22 -0.65 16 8 C -0.02 -0.23 9.61 22.59 0.22 -0.02 16 9 C -0.15 -3.03 5.87 -20.13 -0.12 -3.15 16 10 C 0.51 13.51 7.90 70.34 0.56 14.06 16 11 O -0.54 -17.83 16.13 19.95 0.32 -17.51 16 12 O -0.34 -8.79 9.46 -56.20 -0.53 -9.32 16 13 C 0.08 2.19 5.48 71.98 0.39 2.59 16 14 C -0.08 -2.56 5.60 30.59 0.17 -2.39 16 15 C -0.09 -3.66 5.67 71.98 0.41 -3.25 16 16 S -0.18 -9.32 21.44 -56.49 -1.21 -10.54 16 17 C -0.54 -31.05 9.50 67.95 0.65 -30.40 16 18 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 19 C 0.02 1.01 5.49 84.86 0.47 1.48 16 20 N -0.91 -53.93 13.22 21.65 0.29 -53.65 16 21 Si 0.99 43.74 29.55 68.60 2.03 45.76 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 C -0.01 -0.13 9.14 22.81 0.21 0.07 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.18 0.50 7.60 -2.91 -0.02 0.48 16 30 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 31 H 0.16 1.66 7.60 -2.91 -0.02 1.63 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.13 3.28 7.23 -2.91 -0.02 3.26 16 Total: -1.00 -76.68 365.12 6.75 -69.93 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.06 Total: 6.70 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 5.02 Total: -12.46 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.29 Total: -53.65 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.44 Total: -45.76 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.21 Total: -10.54 kcal Total: -76.68 6.75 -69.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805406847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.542 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds