Wall clock time and date at job start Tue Mar 31 2020 14:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99916 * 2 1 4 4 O 1.21453 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47851 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.39238 * 120.19926 * 305.28622 * 5 3 2 7 7 C 1.38234 * 119.99226 * 180.02562 * 6 5 3 8 8 C 1.38370 * 120.40912 * 0.02562 * 7 6 5 9 9 C 1.38227 * 120.40891 * 0.02562 * 8 7 6 10 10 C 1.39244 * 119.99719 * 359.97438 * 9 8 7 11 11 C 1.47841 * 120.20410 * 180.02562 * 10 9 8 12 12 O 1.21453 * 120.00225 * 173.77936 * 11 10 9 13 13 O 1.34707 * 119.99873 * 353.78233 * 11 10 9 14 14 C 1.45202 * 116.99899 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47242 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47310 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47307 * 179.97438 * 16 15 14 18 18 C 1.76196 * 99.99956 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99726 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99800 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47125 * 59.99670 * 22 20 18 24 24 H 1.48499 * 109.47161 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47260 * 299.99705 * 22 20 18 26 26 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46854 * 299.99502 * 1 2 3 28 28 H 1.08995 * 109.46930 * 59.99347 * 1 2 3 29 29 H 1.07997 * 120.00587 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.79582 * 179.72249 * 7 6 5 31 31 H 1.07993 * 119.79236 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00206 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.46859 * 300.00069 * 14 13 11 34 34 H 1.09005 * 109.47210 * 59.99578 * 14 13 11 35 35 H 1.09004 * 109.46772 * 300.00062 * 15 14 13 36 36 H 1.08991 * 109.47335 * 59.99874 * 15 14 13 37 37 H 1.09003 * 109.46691 * 299.99999 * 16 15 14 38 38 H 1.09005 * 109.47309 * 59.99466 * 16 15 14 39 39 H 0.96995 * 120.00486 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2188 0.0005 5 6 3.5401 1.2777 -0.0006 6 6 4.2763 0.6199 0.9813 7 6 5.6565 0.6956 0.9770 8 6 6.3150 1.4230 0.0014 9 6 5.6008 2.0833 -0.9807 10 6 4.2099 2.0185 -0.9925 11 6 3.4414 2.7226 -2.0411 12 8 2.2385 2.5728 -2.1163 13 8 4.0754 3.5302 -2.9131 14 6 3.2577 4.1885 -3.9162 15 6 4.1464 5.0566 -4.8092 16 6 3.2847 5.7508 -5.8658 17 16 4.3359 6.7784 -6.9218 18 6 3.1208 7.4383 -8.0138 19 1 2.0831 7.1628 -7.8969 20 6 3.4974 8.3113 -9.0250 21 7 4.7622 8.6467 -9.1678 22 14 2.2092 9.0104 -10.1832 23 1 1.2055 9.7772 -9.4023 24 1 2.8638 9.9105 -11.1663 25 1 1.5342 7.8996 -10.9013 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.7690 0.0507 1.7462 30 1 6.2242 0.1879 1.7427 31 1 7.3937 1.4757 0.0077 32 1 6.1215 2.6488 -1.7393 33 1 2.7547 3.4373 -4.5252 34 1 2.5136 4.8151 -3.4244 35 1 4.6497 5.8078 -4.2005 36 1 4.8901 4.4297 -5.3010 37 1 2.7810 4.9998 -6.4745 38 1 2.5412 6.3778 -5.3736 39 1 5.0254 9.2565 -9.8747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805440351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:57 Heat of formation + Delta-G solvation = -149.617697 kcal Electronic energy + Delta-G solvation = -23656.974337 eV Core-core repulsion = 19849.167196 eV Total energy + Delta-G solvation = -3807.807141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22171 -40.10273 -38.95833 -36.85347 -36.34858 -33.56600 -32.44505 -32.07134 -31.90560 -28.08464 -26.85050 -25.56216 -24.73193 -23.93805 -21.91166 -21.30948 -20.79317 -18.59264 -17.91645 -17.40174 -17.31463 -16.84625 -16.61178 -16.56736 -15.57528 -15.19562 -14.88631 -14.81477 -14.69606 -14.27948 -13.87883 -13.55850 -13.42059 -13.13520 -12.84044 -12.61281 -12.52451 -12.25396 -12.11586 -11.98708 -11.35570 -11.14834 -11.05661 -10.97631 -10.91117 -10.79038 -10.67719 -10.46674 -10.28691 -9.64680 -9.61255 -9.59209 -9.06797 -8.36541 -6.56548 -6.24559 -3.95698 0.06255 0.58662 2.02899 2.27871 2.35434 2.49264 3.21700 3.23342 3.26305 3.27681 3.52881 4.18202 4.20345 4.34663 4.36422 4.46096 4.75613 4.80296 4.87320 4.97217 5.06038 5.10485 5.13034 5.18797 5.28197 5.33261 5.39307 5.48754 5.61353 5.64664 5.77592 5.80251 5.91082 6.09631 6.14160 6.18560 6.38620 6.44675 6.66369 7.48833 7.59050 7.63139 8.34865 9.21714 10.83552 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002153 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.672972 B =12999.226017 C =14191.971164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.507 3.493 4 O -0.465 6.465 5 C -0.053 4.053 6 C -0.087 4.087 7 C -0.092 4.092 8 C -0.106 4.106 9 C -0.063 4.063 10 C -0.076 4.076 11 C 0.497 3.503 12 O -0.484 6.484 13 O -0.348 6.348 14 C 0.074 3.926 15 C -0.097 4.097 16 C -0.115 4.115 17 S -0.123 6.123 18 C -0.519 4.519 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.870 5.870 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -20.055 22.802 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.348 3.652 4 O -0.349 6.349 5 C -0.054 4.054 6 C -0.105 4.105 7 C -0.110 4.110 8 C -0.124 4.124 9 C -0.081 4.081 10 C -0.078 4.078 11 C 0.339 3.661 12 O -0.371 6.371 13 O -0.265 6.265 14 C 0.000 4.000 15 C -0.136 4.136 16 C -0.263 4.263 17 S 0.105 5.895 18 C -0.667 4.667 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.629 -19.459 22.642 29.899 hybrid contribution -2.493 0.374 -0.884 2.671 sum -0.864 -19.085 21.757 28.955 Atomic orbital electron populations 1.23292 0.75762 1.03643 1.02924 1.86558 1.23749 1.32407 1.84565 1.20902 0.88585 0.82113 0.73648 1.90900 1.65929 1.35811 1.42283 1.19027 0.89990 0.99338 0.97083 1.21234 0.94213 0.97296 0.97726 1.21425 0.93831 0.97397 0.98311 1.21463 1.01100 0.95994 0.93855 1.21578 0.91768 0.96499 0.98246 1.19075 0.93879 0.99917 0.94895 1.21003 0.86170 0.77867 0.81017 1.90925 1.14854 1.60821 1.70533 1.86482 1.42519 1.56148 1.41356 1.23327 0.93527 0.95543 0.87637 1.21287 0.98091 0.98365 0.95810 1.23181 1.01832 1.01779 0.99531 1.84626 1.14180 1.55589 1.35088 1.22655 0.94587 1.32357 1.17085 0.90890 1.25015 0.96107 0.95592 0.97025 1.70003 1.15399 1.33107 1.32008 0.86205 0.80605 0.78849 0.79773 1.19901 1.20789 1.19905 0.87987 0.91884 0.91446 0.84033 0.84247 0.84121 0.83015 0.91044 0.90915 0.90266 0.90285 0.91719 0.91691 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -3.98 10.58 -40.51 -0.43 -4.41 16 3 C 0.51 6.71 6.05 34.66 0.21 6.92 16 4 O -0.46 -7.69 14.49 -27.23 -0.39 -8.08 16 5 C -0.05 -0.58 5.79 -104.64 -0.61 -1.19 16 6 C -0.09 -0.62 9.78 -39.21 -0.38 -1.01 16 7 C -0.09 -0.48 10.03 -39.53 -0.40 -0.87 16 8 C -0.11 -0.61 10.03 -39.54 -0.40 -1.01 16 9 C -0.06 -0.53 9.61 -39.21 -0.38 -0.91 16 10 C -0.08 -0.89 5.90 -104.64 -0.62 -1.51 16 11 C 0.50 7.38 7.79 34.66 0.27 7.65 16 12 O -0.48 -8.55 12.77 -27.23 -0.35 -8.89 16 13 O -0.35 -5.04 9.49 -40.51 -0.38 -5.43 16 14 C 0.07 1.13 5.47 37.16 0.20 1.33 16 15 C -0.10 -1.60 5.60 -26.73 -0.15 -1.75 16 16 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 17 S -0.12 -3.20 21.44 -107.50 -2.30 -5.51 16 18 C -0.52 -14.90 9.50 30.94 0.29 -14.60 16 19 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 21 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 22 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 31 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.15 1.14 7.62 -52.49 -0.40 0.74 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 38 H 0.06 1.30 8.14 -51.91 -0.42 0.88 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -35.79 361.29 -8.49 -44.28 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.02 Total: -3.07 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.77 Total: -5.72 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: 0.73 Total: -25.20 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.56 Total: -26.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.79 -8.49 -44.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805440351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.337 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds