Wall clock time and date at job start Tue Mar 31 2020 14:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34706 * 116.99916 * 2 1 4 4 O 1.21453 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47851 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.39238 * 120.19926 * 305.28622 * 5 3 2 7 7 C 1.38234 * 119.99226 * 180.02562 * 6 5 3 8 8 C 1.38370 * 120.40912 * 0.02562 * 7 6 5 9 9 C 1.38227 * 120.40891 * 0.02562 * 8 7 6 10 10 C 1.39244 * 119.99719 * 359.97438 * 9 8 7 11 11 C 1.47841 * 120.20410 * 180.02562 * 10 9 8 12 12 O 1.21453 * 120.00225 * 173.77936 * 11 10 9 13 13 O 1.34707 * 119.99873 * 353.78233 * 11 10 9 14 14 C 1.45202 * 116.99899 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47242 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47310 * 180.02562 * 15 14 13 17 17 S 1.81000 * 109.47307 * 179.97438 * 16 15 14 18 18 C 1.76196 * 99.99956 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99726 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99800 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47125 * 59.99670 * 22 20 18 24 24 H 1.48499 * 109.47161 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47260 * 299.99705 * 22 20 18 26 26 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46854 * 299.99502 * 1 2 3 28 28 H 1.08995 * 109.46930 * 59.99347 * 1 2 3 29 29 H 1.07997 * 120.00587 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.79582 * 179.72249 * 7 6 5 31 31 H 1.07993 * 119.79236 * 179.97438 * 8 7 6 32 32 H 1.08002 * 120.00206 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.46859 * 300.00069 * 14 13 11 34 34 H 1.09005 * 109.47210 * 59.99578 * 14 13 11 35 35 H 1.09004 * 109.46772 * 300.00062 * 15 14 13 36 36 H 1.08991 * 109.47335 * 59.99874 * 15 14 13 37 37 H 1.09003 * 109.46691 * 299.99999 * 16 15 14 38 38 H 1.09005 * 109.47309 * 59.99466 * 16 15 14 39 39 H 0.96995 * 120.00486 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2188 0.0005 5 6 3.5401 1.2777 -0.0006 6 6 4.2763 0.6199 0.9813 7 6 5.6565 0.6956 0.9770 8 6 6.3150 1.4230 0.0014 9 6 5.6008 2.0833 -0.9807 10 6 4.2099 2.0185 -0.9925 11 6 3.4414 2.7226 -2.0411 12 8 2.2385 2.5728 -2.1163 13 8 4.0754 3.5302 -2.9131 14 6 3.2577 4.1885 -3.9162 15 6 4.1464 5.0566 -4.8092 16 6 3.2847 5.7508 -5.8658 17 16 4.3359 6.7784 -6.9218 18 6 3.1208 7.4383 -8.0138 19 1 2.0831 7.1628 -7.8969 20 6 3.4974 8.3113 -9.0250 21 7 4.7622 8.6467 -9.1678 22 14 2.2092 9.0104 -10.1832 23 1 1.2055 9.7772 -9.4023 24 1 2.8638 9.9105 -11.1663 25 1 1.5342 7.8996 -10.9013 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 3.7690 0.0507 1.7462 30 1 6.2242 0.1879 1.7427 31 1 7.3937 1.4757 0.0077 32 1 6.1215 2.6488 -1.7393 33 1 2.7547 3.4373 -4.5252 34 1 2.5136 4.8151 -3.4244 35 1 4.6497 5.8078 -4.2005 36 1 4.8901 4.4297 -5.3010 37 1 2.7810 4.9998 -6.4745 38 1 2.5412 6.3778 -5.3736 39 1 5.0254 9.2565 -9.8747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805440351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:57 Heat of formation + Delta-G solvation = -170.081768 kcal Electronic energy + Delta-G solvation = -23657.861726 eV Core-core repulsion = 19849.167196 eV Total energy + Delta-G solvation = -3808.694529 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.16255 -41.15520 -39.66792 -37.96978 -37.39435 -34.99123 -34.60441 -32.73125 -32.59136 -28.82382 -28.30594 -27.55951 -25.66774 -24.63154 -22.97829 -22.58675 -21.65272 -19.66840 -19.34912 -18.80503 -18.28280 -17.83270 -17.79523 -17.45529 -16.91278 -16.39970 -16.07782 -16.00931 -15.81008 -15.49016 -14.92437 -14.59033 -14.43381 -14.30110 -14.19500 -13.85409 -13.59606 -13.25947 -13.16662 -12.95745 -12.94754 -12.68416 -12.54233 -12.45665 -12.44291 -11.96011 -11.77683 -11.63256 -11.58541 -11.42962 -11.15791 -10.39857 -10.23505 -10.18637 -8.69999 -8.39616 -6.16354 -0.67798 0.00529 1.11730 1.19082 1.33902 1.37950 1.39825 1.47678 1.64278 1.78143 2.25185 2.60733 2.94722 3.23992 3.40304 3.55452 3.72639 3.78217 3.91089 3.97785 4.08131 4.22986 4.23523 4.24769 4.26255 4.26644 4.37153 4.53914 4.63332 4.64790 4.82893 4.96773 5.00145 5.05356 5.14199 5.25258 5.28224 5.33173 5.37954 5.70323 6.15882 6.46399 6.60874 7.02639 8.69504 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.002153 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.672972 B =12999.226017 C =14191.971164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.356 6.356 3 C 0.504 3.496 4 O -0.512 6.512 5 C -0.081 4.081 6 C -0.081 4.081 7 C -0.072 4.072 8 C -0.094 4.094 9 C -0.064 4.064 10 C -0.109 4.109 11 C 0.492 3.508 12 O -0.522 6.522 13 O -0.345 6.345 14 C 0.082 3.918 15 C -0.083 4.083 16 C -0.093 4.093 17 S -0.178 6.178 18 C -0.543 4.543 19 H 0.073 0.927 20 C 0.017 3.983 21 N -0.905 5.905 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.265 1.265 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.165 0.835 30 H 0.184 0.816 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -21.728 24.331 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.272 6.272 3 C 0.348 3.652 4 O -0.399 6.399 5 C -0.082 4.082 6 C -0.099 4.099 7 C -0.089 4.089 8 C -0.112 4.112 9 C -0.082 4.082 10 C -0.110 4.110 11 C 0.337 3.663 12 O -0.412 6.412 13 O -0.261 6.261 14 C 0.007 3.993 15 C -0.121 4.121 16 C -0.242 4.242 17 S 0.050 5.950 18 C -0.691 4.691 19 H 0.091 0.909 20 C -0.188 4.188 21 N -0.541 5.541 22 Si 0.815 3.185 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.190 1.190 26 H 0.158 0.842 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.182 0.818 30 H 0.202 0.798 31 H 0.196 0.804 32 H 0.174 0.826 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.751 -21.160 24.183 32.251 hybrid contribution -2.768 0.763 -1.218 3.119 sum -0.017 -20.397 22.964 30.715 Atomic orbital electron populations 1.23550 0.74550 1.05867 1.02239 1.86558 1.25059 1.31580 1.84035 1.21482 0.89725 0.81857 0.72168 1.90860 1.67186 1.37222 1.44668 1.19163 0.88881 1.01338 0.98829 1.21606 0.95262 0.96251 0.96752 1.21968 0.92938 0.95686 0.98304 1.21928 1.02802 0.94138 0.92314 1.21764 0.90371 0.96801 0.99290 1.19060 0.95073 1.01785 0.95083 1.21754 0.86170 0.77246 0.81089 1.90902 1.16518 1.62242 1.71564 1.86469 1.42138 1.56247 1.41271 1.23069 0.93048 0.95433 0.87783 1.21095 0.97620 0.98405 0.95005 1.23070 1.01132 1.00822 0.99192 1.84564 1.16607 1.57277 1.36518 1.23020 0.94959 1.33070 1.18045 0.90928 1.26051 0.98439 0.95688 0.98656 1.70127 1.17472 1.33712 1.32836 0.85076 0.77692 0.78279 0.77432 1.19078 1.19774 1.18969 0.84243 0.91400 0.93386 0.81784 0.79842 0.80430 0.82591 0.90875 0.91427 0.89996 0.89655 0.91376 0.91622 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -8.05 10.58 -56.16 -0.59 -8.65 16 3 C 0.50 13.87 6.05 70.37 0.43 14.29 16 4 O -0.51 -18.05 14.49 27.64 0.40 -17.65 16 5 C -0.08 -1.76 5.79 -19.87 -0.11 -1.87 16 6 C -0.08 -0.94 9.78 22.51 0.22 -0.72 16 7 C -0.07 -0.40 10.03 22.30 0.22 -0.18 16 8 C -0.09 -0.68 10.03 22.30 0.22 -0.46 16 9 C -0.06 -0.97 9.61 22.51 0.22 -0.75 16 10 C -0.11 -2.54 5.90 -19.88 -0.12 -2.66 16 11 C 0.49 15.23 7.79 70.36 0.55 15.78 16 12 O -0.52 -19.61 12.77 27.64 0.35 -19.26 16 13 O -0.34 -10.18 9.49 -56.17 -0.53 -10.71 16 14 C 0.08 2.53 5.47 71.98 0.39 2.92 16 15 C -0.08 -2.73 5.60 30.59 0.17 -2.56 16 16 C -0.09 -3.81 5.67 71.98 0.41 -3.40 16 17 S -0.18 -9.49 21.44 -56.49 -1.21 -10.70 16 18 C -0.54 -31.62 9.50 67.95 0.65 -30.97 16 19 H 0.07 4.08 7.80 -2.91 -0.02 4.06 16 20 C 0.02 0.97 5.49 84.86 0.47 1.44 16 21 N -0.91 -54.61 13.22 21.65 0.29 -54.33 16 22 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 26 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.07 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.18 -0.49 8.06 -2.91 -0.02 -0.51 16 31 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 32 H 0.16 2.12 7.62 -2.91 -0.02 2.10 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 35 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -81.86 361.29 6.70 -75.16 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.06 Total: 7.23 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.91 Total: -7.41 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.29 Total: -54.33 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.37 Total: -56.27 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.21 Total: -10.70 kcal Total: -81.86 6.70 -75.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805440351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.919 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds