Wall clock time and date at job start Tue Mar 31 2020 13:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48501 * 109.46957 * 239.99741 * 3 2 1 5 5 H 1.48496 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47234 * 120.00193 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 O 1.42903 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.35917 * 116.99522 * 179.97438 * 17 16 14 19 19 C 1.38894 * 119.97192 * 359.72061 * 18 17 16 20 20 C 1.38293 * 120.29196 * 179.76337 * 19 18 17 21 21 C 1.37932 * 120.23418 * 0.51963 * 20 19 18 22 22 C 1.39843 * 119.93776 * 359.74001 * 21 20 19 23 23 C 1.47185 * 120.14473 * 180.02562 * 22 21 20 24 24 O 1.21248 * 119.99777 * 179.97438 * 23 22 21 25 25 C 1.38385 * 119.96838 * 180.02562 * 18 17 16 26 26 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 28 28 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 29 29 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 30 30 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 31 31 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 32 32 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 33 33 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 35 35 H 1.08000 * 119.85511 * 0.02562 * 19 18 17 36 36 H 1.07996 * 119.88347 * 180.26116 * 20 19 18 37 37 H 1.07998 * 120.03149 * 179.76700 * 21 20 19 38 38 H 1.08000 * 119.99925 * 359.97438 * 23 22 21 39 39 H 1.07998 * 120.11359 * 359.95643 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 8 4.2357 -10.9547 0.0043 18 6 3.9996 -12.2932 0.0045 19 6 2.6942 -12.7675 0.0101 20 6 2.4463 -14.1280 0.0054 21 6 3.4942 -15.0249 0.0057 22 6 4.8124 -14.5580 0.0055 23 6 5.9341 -15.5110 0.0053 24 8 7.0759 -15.1033 0.0046 25 6 5.0601 -13.1822 0.0053 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7306 0.8928 28 1 3.1244 -3.7321 -0.8872 29 1 1.3708 -5.4848 -0.8865 30 1 1.3703 -5.4838 0.8934 31 1 3.7600 -6.1473 0.8936 32 1 3.7598 -6.1481 -0.8863 33 1 2.4942 -10.2864 0.8934 34 1 2.4958 -10.2863 -0.8865 35 1 1.8690 -12.0707 0.0140 36 1 1.4286 -14.4895 0.0055 37 1 3.2969 -16.0867 0.0058 38 1 5.7400 -16.5735 0.0058 39 1 6.0755 -12.8143 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805453654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:11 Heat of formation + Delta-G solvation = -137.873929 kcal Electronic energy + Delta-G solvation = -22449.694781 eV Core-core repulsion = 18642.396889 eV Total energy + Delta-G solvation = -3807.297892 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12279 -40.41957 -39.39947 -37.70450 -36.71198 -33.63128 -32.47269 -31.89024 -31.27352 -29.23058 -26.50511 -25.56738 -25.32109 -23.03419 -22.13457 -21.41543 -20.88136 -19.01318 -17.76138 -17.36040 -17.33058 -17.27087 -16.83203 -16.36798 -16.09981 -15.65049 -15.19851 -14.84250 -14.83127 -14.55786 -14.36194 -14.29663 -13.67312 -13.26294 -13.24010 -12.76716 -12.70496 -12.49406 -12.17053 -11.71300 -11.69000 -11.42062 -11.21439 -11.03434 -10.97476 -10.74192 -10.62833 -10.39154 -10.37361 -9.68431 -9.63786 -9.09581 -8.86967 -8.40536 -6.60230 -6.27524 -3.99071 0.04319 0.81921 1.71456 1.88177 1.90181 2.99301 3.20614 3.21345 3.21711 3.25920 3.49208 3.72703 4.09794 4.17409 4.30902 4.35900 4.44383 4.46080 4.50567 4.62963 4.83070 5.02395 5.04860 5.08340 5.09163 5.31869 5.33284 5.40024 5.61110 5.69575 5.70352 5.74808 5.79307 6.00355 6.06260 6.28775 6.38105 6.60067 6.70919 6.87211 7.48315 7.56162 8.31817 9.18872 10.80537 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.043439 B = 0.001497 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.433458 B =18699.878860 C =19313.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.122 6.122 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.351 6.351 14 C 0.462 3.538 15 O -0.485 6.485 16 C 0.068 3.932 17 O -0.292 6.292 18 C 0.119 3.881 19 C -0.177 4.177 20 C -0.092 4.092 21 C -0.106 4.106 22 C -0.155 4.155 23 C 0.383 3.617 24 O -0.453 6.453 25 C -0.089 4.089 26 H 0.269 0.731 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -32.600 0.018 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.091 0.909 9 S 0.106 5.894 10 C -0.264 4.264 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.268 6.268 14 C 0.302 3.698 15 O -0.371 6.371 16 C -0.009 4.009 17 O -0.205 6.205 18 C 0.074 3.926 19 C -0.196 4.196 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.156 4.156 23 C 0.240 3.760 24 O -0.325 6.325 25 C -0.107 4.107 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.982 -32.198 0.018 32.336 hybrid contribution 1.525 1.447 0.000 2.102 sum 4.507 -30.751 0.018 31.079 Atomic orbital electron populations 1.70005 1.05933 1.27560 1.46975 1.25012 0.95093 0.99114 0.94443 0.86203 0.79236 0.81077 0.78912 1.19894 1.20764 1.19888 1.22661 0.94581 0.90671 1.58935 0.90859 1.84637 1.08665 0.99220 1.96904 1.23189 1.03550 0.96230 1.03446 1.21301 0.96332 0.91531 1.04433 1.23380 0.98014 0.75655 1.02987 1.86414 1.39722 1.17006 1.83641 1.22726 0.85009 0.87949 0.74087 1.90738 1.18357 1.84622 1.43346 1.21933 0.88067 0.85222 1.05628 1.86128 1.32131 1.13458 1.88830 1.18873 0.93613 0.82386 0.97721 1.21605 0.95525 0.97565 1.04922 1.20956 0.99700 0.92147 0.98188 1.21323 0.91209 1.00361 0.99549 1.20778 0.95906 0.94045 1.04860 1.24118 0.86922 0.94571 0.70371 1.90563 1.24888 1.83158 1.33879 1.20704 0.99131 0.90959 0.99947 0.92166 0.91655 0.91660 0.90227 0.90223 0.90817 0.90824 0.87332 0.87333 0.84536 0.84723 0.84648 0.87234 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.72 9.50 30.94 0.29 -14.43 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.12 -3.12 21.44 -107.50 -2.30 -5.43 16 10 C -0.12 -2.24 5.67 37.16 0.21 -2.03 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C 0.07 1.02 5.47 37.16 0.20 1.22 16 13 O -0.35 -4.37 10.22 -39.26 -0.40 -4.77 16 14 C 0.46 5.59 8.03 36.01 0.29 5.88 16 15 O -0.48 -7.71 16.25 -25.48 -0.41 -8.12 16 16 C 0.07 0.54 5.33 36.01 0.19 0.73 16 17 O -0.29 -3.06 9.67 -39.43 -0.38 -3.44 16 18 C 0.12 1.02 6.68 -39.28 -0.26 0.76 16 19 C -0.18 -1.03 9.04 -39.32 -0.36 -1.39 16 20 C -0.09 -0.40 10.02 -39.67 -0.40 -0.80 16 21 C -0.11 -0.44 9.79 -39.09 -0.38 -0.82 16 22 C -0.15 -0.99 5.87 -105.08 -0.62 -1.61 16 23 C 0.38 2.21 11.46 34.36 0.39 2.60 16 24 O -0.45 -4.68 17.16 5.58 0.10 -4.58 16 25 C -0.09 -0.78 9.54 -38.94 -0.37 -1.15 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.11 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.11 0.57 7.67 -51.93 -0.40 0.17 16 35 H 0.14 0.49 6.28 -52.49 -0.33 0.17 16 36 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 37 H 0.14 0.13 8.06 -52.49 -0.42 -0.29 16 38 H 0.11 0.14 8.06 -52.49 -0.42 -0.28 16 39 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -35.86 364.67 -8.12 -43.99 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.87 Total: -3.82 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.05 Total: -10.76 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.87 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.10 Total: -20.91 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.86 -8.12 -43.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805453654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.887 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds