Wall clock time and date at job start Tue Mar 31 2020 13:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00025 * 2 1 4 4 H 1.48501 * 109.46957 * 239.99741 * 3 2 1 5 5 H 1.48496 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47234 * 120.00193 * 3 2 1 7 7 C 1.38805 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00250 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99769 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47241 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47278 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47109 * 180.02562 * 12 11 10 14 14 C 1.34230 * 117.00018 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00015 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00046 * 180.02562 * 14 13 12 17 17 O 1.42903 * 109.46878 * 179.97438 * 16 14 13 18 18 C 1.35917 * 116.99522 * 179.97438 * 17 16 14 19 19 C 1.38894 * 119.97192 * 359.72061 * 18 17 16 20 20 C 1.38293 * 120.29196 * 179.76337 * 19 18 17 21 21 C 1.37932 * 120.23418 * 0.51963 * 20 19 18 22 22 C 1.39843 * 119.93776 * 359.74001 * 21 20 19 23 23 C 1.47185 * 120.14473 * 180.02562 * 22 21 20 24 24 O 1.21248 * 119.99777 * 179.97438 * 23 22 21 25 25 C 1.38385 * 119.96838 * 180.02562 * 18 17 16 26 26 H 0.97004 * 119.99685 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47089 * 59.99606 * 10 9 7 28 28 H 1.09008 * 109.46987 * 300.00321 * 10 9 7 29 29 H 1.09005 * 109.46784 * 59.99884 * 11 10 9 30 30 H 1.08998 * 109.46854 * 300.00340 * 11 10 9 31 31 H 1.09001 * 109.46829 * 59.99637 * 12 11 10 32 32 H 1.08998 * 109.47230 * 300.00373 * 12 11 10 33 33 H 1.09002 * 109.47060 * 299.99765 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99853 * 16 14 13 35 35 H 1.08000 * 119.85511 * 0.02562 * 19 18 17 36 36 H 1.07996 * 119.88347 * 180.26116 * 20 19 18 37 37 H 1.07998 * 120.03149 * 179.76700 * 21 20 19 38 38 H 1.08000 * 119.99925 * 359.97438 * 23 22 21 39 39 H 1.07998 * 120.11359 * 359.95643 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5157 -3.8915 0.0029 11 6 1.9792 -5.3243 0.0036 12 6 3.1512 -6.3078 0.0038 13 8 2.6420 -7.6675 0.0038 14 6 3.5483 -8.6576 0.0045 15 8 4.7281 -8.3968 0.0047 16 6 3.0944 -10.0947 0.0040 17 8 4.2357 -10.9547 0.0043 18 6 3.9996 -12.2932 0.0045 19 6 2.6942 -12.7675 0.0101 20 6 2.4463 -14.1280 0.0054 21 6 3.4942 -15.0249 0.0057 22 6 4.8124 -14.5580 0.0055 23 6 5.9341 -15.5110 0.0053 24 8 7.0759 -15.1033 0.0046 25 6 5.0601 -13.1822 0.0053 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7306 0.8928 28 1 3.1244 -3.7321 -0.8872 29 1 1.3708 -5.4848 -0.8865 30 1 1.3703 -5.4838 0.8934 31 1 3.7600 -6.1473 0.8936 32 1 3.7598 -6.1481 -0.8863 33 1 2.4942 -10.2864 0.8934 34 1 2.4958 -10.2863 -0.8865 35 1 1.8690 -12.0707 0.0140 36 1 1.4286 -14.4895 0.0055 37 1 3.2969 -16.0867 0.0058 38 1 5.7400 -16.5735 0.0058 39 1 6.0755 -12.8143 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805453654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:10 Heat of formation + Delta-G solvation = -159.613953 kcal Electronic energy + Delta-G solvation = -22450.637500 eV Core-core repulsion = 18642.396889 eV Total energy + Delta-G solvation = -3808.240611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90353 -41.14325 -40.00711 -38.32614 -37.69994 -34.97275 -34.59568 -32.33058 -31.81061 -29.94138 -28.05052 -27.27377 -25.92779 -23.51291 -23.01870 -22.61330 -21.52874 -19.69122 -19.51444 -18.46911 -18.21872 -18.07334 -17.31500 -16.97296 -16.95401 -16.90496 -16.22445 -16.14722 -15.87103 -15.64684 -15.31931 -14.93069 -14.69235 -14.36783 -14.25439 -13.89463 -13.80879 -13.49236 -13.15906 -12.94793 -12.82167 -12.66944 -12.45247 -12.43430 -12.23092 -12.19916 -11.74006 -11.58399 -11.45721 -11.15044 -10.85474 -10.38191 -10.08027 -9.34978 -8.68814 -8.39119 -6.15561 -0.39574 0.38092 0.88440 0.93854 1.31721 1.40276 1.47012 1.48241 1.70151 2.25403 2.38716 2.79598 2.95527 3.24162 3.35693 3.39809 3.74540 3.81068 3.91935 3.93825 3.96653 4.04787 4.11218 4.13659 4.25498 4.29423 4.41626 4.47187 4.66461 4.70282 4.89369 4.99591 5.05697 5.20088 5.28394 5.30813 5.38127 5.38730 5.64087 6.16376 6.19565 6.47166 6.51940 7.03506 8.69859 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.043439 B = 0.001497 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.433458 B =18699.878860 C =19313.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.073 0.927 9 S -0.180 6.180 10 C -0.095 4.095 11 C -0.085 4.085 12 C 0.080 3.920 13 O -0.345 6.345 14 C 0.462 3.538 15 O -0.530 6.530 16 C 0.071 3.929 17 O -0.328 6.328 18 C 0.095 3.905 19 C -0.174 4.174 20 C -0.091 4.091 21 C -0.088 4.088 22 C -0.170 4.170 23 C 0.390 3.610 24 O -0.511 6.511 25 C -0.124 4.124 26 H 0.272 0.728 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.168 0.832 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 -34.858 0.021 34.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.187 4.187 3 Si 0.814 3.186 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.692 4.692 8 H 0.091 0.909 9 S 0.049 5.951 10 C -0.243 4.243 11 C -0.123 4.123 12 C 0.005 3.995 13 O -0.262 6.262 14 C 0.305 3.695 15 O -0.419 6.419 16 C -0.004 4.004 17 O -0.243 6.243 18 C 0.051 3.949 19 C -0.192 4.192 20 C -0.108 4.108 21 C -0.106 4.106 22 C -0.171 4.171 23 C 0.251 3.749 24 O -0.386 6.386 25 C -0.143 4.143 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.187 0.813 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.544 -34.485 0.021 34.519 hybrid contribution 1.908 1.986 -0.001 2.754 sum 3.452 -32.499 0.020 32.682 Atomic orbital electron populations 1.70129 1.07587 1.28698 1.47709 1.26024 0.96021 1.02980 0.93653 0.85093 0.77976 0.76233 0.79290 1.19051 1.19848 1.19041 1.23041 0.94859 0.92097 1.59244 0.90875 1.84569 1.12853 1.00631 1.97069 1.23089 1.00914 0.96701 1.03643 1.21109 0.96849 0.89497 1.04851 1.23107 0.96893 0.76326 1.03140 1.86403 1.39645 1.16508 1.83596 1.23637 0.84301 0.89286 0.72266 1.90724 1.20262 1.85298 1.45635 1.22185 0.87645 0.81926 1.08642 1.86061 1.33808 1.14782 1.89615 1.19034 0.94843 0.81405 0.99622 1.21940 0.94621 0.99050 1.03607 1.21464 1.01439 0.91426 0.96513 1.21812 0.89672 1.02566 0.96568 1.21049 0.97664 0.93005 1.05343 1.24961 0.85599 0.96597 0.67699 1.90557 1.27040 1.84180 1.36835 1.20732 0.98092 0.92839 1.02622 0.91862 0.91411 0.91418 0.89834 0.89827 0.90768 0.90777 0.84057 0.84067 0.82097 0.81265 0.80478 0.81638 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.87 13.22 21.65 0.29 -53.58 16 2 C 0.02 1.05 5.49 84.86 0.47 1.51 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.54 -31.13 9.50 67.96 0.65 -30.48 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 9 S -0.18 -9.31 21.44 -56.49 -1.21 -10.52 16 10 C -0.09 -3.65 5.67 71.98 0.41 -3.25 16 11 C -0.08 -2.55 5.60 30.59 0.17 -2.37 16 12 C 0.08 2.14 5.47 71.98 0.39 2.53 16 13 O -0.34 -8.14 10.22 -51.41 -0.53 -8.67 16 14 C 0.46 10.93 8.03 71.24 0.57 11.50 16 15 O -0.53 -17.32 16.25 28.40 0.46 -16.86 16 16 C 0.07 1.02 5.33 71.24 0.38 1.40 16 17 O -0.33 -7.02 9.67 -73.53 -0.71 -7.73 16 18 C 0.10 1.61 6.68 22.46 0.15 1.76 16 19 C -0.17 -1.53 9.04 22.44 0.20 -1.33 16 20 C -0.09 -0.41 10.02 22.21 0.22 -0.18 16 21 C -0.09 -0.39 9.79 22.59 0.22 -0.17 16 22 C -0.17 -2.00 5.87 -20.16 -0.12 -2.12 16 23 C 0.39 4.12 11.46 70.17 0.80 4.93 16 24 O -0.51 -11.22 17.16 -2.93 -0.05 -11.27 16 25 C -0.12 -2.36 9.54 22.68 0.22 -2.14 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 32 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 33 H 0.14 1.06 7.64 -2.39 -0.02 1.04 16 34 H 0.14 1.07 7.67 -2.39 -0.02 1.05 16 35 H 0.16 0.50 6.28 -2.91 -0.02 0.49 16 36 H 0.17 -0.36 8.06 -2.91 -0.02 -0.38 16 37 H 0.18 -0.72 8.06 -2.91 -0.02 -0.74 16 38 H 0.17 -0.18 8.06 -2.91 -0.02 -0.21 16 39 H 0.11 2.68 7.65 -2.91 -0.02 2.65 16 Total: -1.00 -83.27 364.67 6.08 -77.20 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.06 Total: 4.22 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.74 Total: -18.41 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.29 Total: -53.58 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.83 Total: -44.53 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.21 Total: -10.52 kcal Total: -83.27 6.08 -77.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805453654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.416 kcal (2) G-P(sol) polarization free energy of solvation -83.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds