Wall clock time and date at job start Tue Mar 31 2020 14:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47748 * 240.00099 * 3 2 1 5 5 H 1.48503 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47378 * 119.99945 * 3 2 1 7 7 C 1.37881 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46998 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46889 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47168 * 180.02562 * 12 11 10 14 14 O 1.20831 * 120.00108 * 359.97438 * 13 12 11 15 15 O 1.34228 * 120.00281 * 180.02562 * 13 12 11 16 16 C 1.45195 * 117.00206 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47454 * 179.97438 * 16 15 13 18 18 O 1.21254 * 119.99386 * 0.02562 * 17 16 15 19 19 C 1.47167 * 120.00077 * 180.02562 * 17 16 15 20 20 C 1.39864 * 120.16792 * 359.97438 * 19 17 16 21 21 C 1.37875 * 119.85339 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.18630 * 0.02562 * 21 20 19 23 23 C 1.38494 * 120.33521 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 119.92705 * 180.02562 * 23 22 21 25 25 C 1.38030 * 120.14662 * 0.02562 * 23 22 21 26 26 H 0.97000 * 120.00454 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46663 * 59.99985 * 9 7 2 28 28 H 1.08997 * 109.47206 * 300.00067 * 9 7 2 29 29 H 1.08999 * 109.47397 * 60.00287 * 10 9 7 30 30 H 1.08997 * 109.47376 * 300.00182 * 10 9 7 31 31 H 1.08996 * 109.47283 * 60.00336 * 11 10 9 32 32 H 1.08997 * 109.47143 * 300.00167 * 11 10 9 33 33 H 1.09001 * 109.47155 * 59.99410 * 12 11 10 34 34 H 1.09006 * 109.46888 * 299.99550 * 12 11 10 35 35 H 1.09001 * 109.47297 * 59.99726 * 16 15 13 36 36 H 1.08998 * 109.47351 * 299.99995 * 16 15 13 37 37 H 1.08004 * 120.07514 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.90536 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.82823 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.09347 * 180.26826 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0044 14 8 0.5128 -7.4552 -0.0043 15 8 2.3923 -8.6176 -0.0046 16 6 1.6015 -9.8353 -0.0053 17 6 2.5195 -11.0305 -0.0061 18 8 3.7216 -10.8715 -0.0056 19 6 1.9570 -12.3904 -0.0074 20 6 0.5709 -12.5777 -0.0074 21 6 0.0509 -13.8546 -0.0081 22 6 0.8964 -14.9503 -0.0083 23 6 2.2701 -14.7739 -0.0083 24 17 3.3208 -16.1557 -0.0092 25 6 2.8056 -13.5017 -0.0076 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6247 -2.5572 0.8896 29 1 2.8726 -3.6048 0.8877 30 1 2.8713 -3.6039 -0.8922 31 1 0.8533 -5.0442 -0.8922 32 1 0.8540 -5.0455 0.8877 33 1 3.1013 -6.0927 0.8868 34 1 3.1011 -6.0918 -0.8932 35 1 0.9729 -9.8599 -0.8954 36 1 0.9724 -9.8605 0.8845 37 1 -0.0906 -11.7239 -0.0068 38 1 -1.0192 -14.0002 -0.0086 39 1 0.4829 -15.9480 -0.0085 40 1 3.8768 -13.3650 -0.0120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:57 Heat of formation + Delta-G solvation = -125.740194 kcal Electronic energy + Delta-G solvation = -22721.850442 eV Core-core repulsion = 18913.035001 eV Total energy + Delta-G solvation = -3808.815441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98944 -40.24711 -38.83805 -37.03075 -36.66596 -35.00649 -32.72517 -32.41890 -31.64132 -30.20124 -28.96167 -25.90950 -24.49740 -23.29125 -22.68573 -20.69946 -20.59608 -20.04877 -18.20894 -17.51377 -17.06073 -16.93414 -16.38490 -16.16918 -15.80263 -15.51445 -15.27271 -14.63535 -14.59420 -14.44855 -14.36039 -13.96766 -13.20057 -12.95174 -12.65373 -12.63049 -12.29180 -12.15280 -12.10278 -11.76445 -11.68505 -11.57561 -11.04671 -10.99727 -10.67115 -10.59797 -10.53462 -10.47378 -10.25532 -9.78901 -9.65811 -9.47119 -9.29662 -9.03910 -8.31707 -5.96735 -3.99355 -0.10804 0.48058 1.45151 1.70037 2.17059 2.24568 2.96707 3.35258 3.39585 3.41787 3.43402 4.05815 4.21111 4.28066 4.44624 4.48160 4.59814 4.65150 4.65393 4.79795 4.93018 5.11045 5.21684 5.25243 5.38802 5.44234 5.48004 5.54956 5.68661 5.94987 6.03679 6.14154 6.23464 6.44799 6.75055 6.88066 6.92832 7.15148 7.67660 7.71365 7.86047 8.03735 8.45650 9.07905 9.64491 11.14494 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.048119 B = 0.001492 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.749458 B =18756.677525 C =19302.074996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.462 3.538 14 O -0.504 6.504 15 O -0.343 6.343 16 C 0.020 3.980 17 C 0.397 3.603 18 O -0.418 6.418 19 C -0.151 4.151 20 C -0.070 4.070 21 C -0.115 4.115 22 C -0.078 4.078 23 C -0.048 4.048 24 Cl -0.060 7.060 25 C -0.051 4.051 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -34.812 -0.024 34.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.305 3.695 14 O -0.391 6.391 15 O -0.260 6.260 16 C -0.055 4.055 17 C 0.272 3.728 18 O -0.290 6.290 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.134 4.134 22 C -0.097 4.097 23 C -0.074 4.074 24 Cl -0.031 7.031 25 C -0.069 4.069 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.807 -34.753 -0.024 34.800 hybrid contribution 0.232 0.644 0.000 0.685 sum 2.039 -34.109 -0.024 34.169 Atomic orbital electron populations 1.69958 1.06052 1.26655 1.50800 1.25031 0.94844 0.99236 0.95378 0.86662 0.79569 0.83181 0.78585 1.20266 1.21321 1.20272 1.21243 0.93009 0.91159 1.50642 0.92722 1.19094 0.94021 0.91218 0.97356 1.21656 0.99174 0.93489 1.00504 1.21591 0.97058 0.92665 1.03256 1.21643 0.99993 0.87370 1.05827 1.24377 0.87664 0.85667 0.71756 1.90678 1.15552 1.87697 1.45124 1.86628 1.40770 1.14019 1.84598 1.23195 0.94314 0.82565 1.05403 1.22126 0.89458 0.88368 0.72871 1.90600 1.16854 1.87963 1.33601 1.20199 0.94261 0.93723 1.07023 1.21662 0.93766 0.98532 0.94884 1.21172 1.00667 0.91485 1.00026 1.21405 0.91136 1.00641 0.96504 1.20847 0.91637 0.88712 1.06231 1.98402 1.66110 1.41675 1.96910 1.21301 1.01397 0.89587 0.94650 0.92983 0.96541 0.96535 0.93140 0.93144 0.91487 0.91496 0.87621 0.87632 0.87472 0.87465 0.84012 0.83908 0.84174 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 11 C -0.11 -1.82 4.51 -26.73 -0.12 -1.94 16 12 C -0.11 -1.46 5.81 -27.88 -0.16 -1.62 16 13 C 0.46 6.30 7.96 36.00 0.29 6.58 16 14 O -0.50 -7.98 15.73 -18.75 -0.30 -8.28 16 15 O -0.34 -4.26 9.75 -45.90 -0.45 -4.71 16 16 C 0.02 0.18 4.56 36.01 0.16 0.34 16 17 C 0.40 3.68 7.20 -30.68 -0.22 3.46 16 18 O -0.42 -5.30 16.49 -14.08 -0.23 -5.53 16 19 C -0.15 -1.08 5.87 -105.07 -0.62 -1.69 16 20 C -0.07 -0.34 9.47 -39.11 -0.37 -0.71 16 21 C -0.12 -0.45 10.03 -39.65 -0.40 -0.85 16 22 C -0.08 -0.36 9.82 -39.43 -0.39 -0.75 16 23 C -0.05 -0.30 6.31 -39.56 -0.25 -0.55 16 24 Cl -0.06 -0.39 28.95 -51.86 -1.50 -1.89 16 25 C -0.05 -0.37 9.38 -39.06 -0.37 -0.74 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.14 0.42 7.05 -52.48 -0.37 0.05 16 38 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 39 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 40 H 0.15 1.13 7.65 -52.49 -0.40 0.73 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -34.23 368.75 -9.71 -43.93 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -5.38 Total: -5.25 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.13 Total: -14.11 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.98 Total: -18.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.23 -9.71 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.807 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds