Wall clock time and date at job start Tue Mar 31 2020 14:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47748 * 240.00099 * 3 2 1 5 5 H 1.48503 * 109.47334 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47378 * 119.99945 * 3 2 1 7 7 C 1.37881 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46998 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46866 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46889 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47168 * 180.02562 * 12 11 10 14 14 O 1.20831 * 120.00108 * 359.97438 * 13 12 11 15 15 O 1.34228 * 120.00281 * 180.02562 * 13 12 11 16 16 C 1.45195 * 117.00206 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47454 * 179.97438 * 16 15 13 18 18 O 1.21254 * 119.99386 * 0.02562 * 17 16 15 19 19 C 1.47167 * 120.00077 * 180.02562 * 17 16 15 20 20 C 1.39864 * 120.16792 * 359.97438 * 19 17 16 21 21 C 1.37875 * 119.85339 * 180.02562 * 20 19 17 22 22 C 1.38406 * 120.18630 * 0.02562 * 21 20 19 23 23 C 1.38494 * 120.33521 * 359.97438 * 22 21 20 24 24 Cl 1.73594 * 119.92705 * 180.02562 * 23 22 21 25 25 C 1.38030 * 120.14662 * 0.02562 * 23 22 21 26 26 H 0.97000 * 120.00454 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46663 * 59.99985 * 9 7 2 28 28 H 1.08997 * 109.47206 * 300.00067 * 9 7 2 29 29 H 1.08999 * 109.47397 * 60.00287 * 10 9 7 30 30 H 1.08997 * 109.47376 * 300.00182 * 10 9 7 31 31 H 1.08996 * 109.47283 * 60.00336 * 11 10 9 32 32 H 1.08997 * 109.47143 * 300.00167 * 11 10 9 33 33 H 1.09001 * 109.47155 * 59.99410 * 12 11 10 34 34 H 1.09006 * 109.46888 * 299.99550 * 12 11 10 35 35 H 1.09001 * 109.47297 * 59.99726 * 16 15 13 36 36 H 1.08998 * 109.47351 * 299.99995 * 16 15 13 37 37 H 1.08004 * 120.07514 * 0.02562 * 20 19 17 38 38 H 1.08000 * 119.90536 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.82823 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.09347 * 180.26826 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 6 1.7211 -7.4551 -0.0044 14 8 0.5128 -7.4552 -0.0043 15 8 2.3923 -8.6176 -0.0046 16 6 1.6015 -9.8353 -0.0053 17 6 2.5195 -11.0305 -0.0061 18 8 3.7216 -10.8715 -0.0056 19 6 1.9570 -12.3904 -0.0074 20 6 0.5709 -12.5777 -0.0074 21 6 0.0509 -13.8546 -0.0081 22 6 0.8964 -14.9503 -0.0083 23 6 2.2701 -14.7739 -0.0083 24 17 3.3208 -16.1557 -0.0092 25 6 2.8056 -13.5017 -0.0076 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6247 -2.5572 0.8896 29 1 2.8726 -3.6048 0.8877 30 1 2.8713 -3.6039 -0.8922 31 1 0.8533 -5.0442 -0.8922 32 1 0.8540 -5.0455 0.8877 33 1 3.1013 -6.0927 0.8868 34 1 3.1011 -6.0918 -0.8932 35 1 0.9729 -9.8599 -0.8954 36 1 0.9724 -9.8605 0.8845 37 1 -0.0906 -11.7239 -0.0068 38 1 -1.0192 -14.0002 -0.0086 39 1 0.4829 -15.9480 -0.0085 40 1 3.8768 -13.3650 -0.0120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805697267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:57 Heat of formation + Delta-G solvation = -142.889951 kcal Electronic energy + Delta-G solvation = -22722.594111 eV Core-core repulsion = 18913.035001 eV Total energy + Delta-G solvation = -3809.559110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85306 -41.00074 -39.46666 -37.72262 -37.49713 -36.60875 -34.65431 -33.00069 -32.08725 -31.72008 -29.85027 -27.58841 -25.24121 -24.33565 -23.60452 -22.06833 -21.47420 -21.23573 -18.97451 -18.45977 -18.23389 -17.99087 -17.72069 -16.86438 -16.58964 -16.53467 -16.38359 -15.80755 -15.76018 -15.34814 -14.81524 -14.61262 -14.54715 -14.24841 -13.95315 -13.62838 -13.52966 -13.30638 -13.01399 -12.80141 -12.58515 -12.57292 -12.38644 -12.18368 -12.17697 -12.04981 -11.92832 -11.71607 -11.36816 -11.30501 -11.12828 -10.95147 -10.52333 -10.22897 -9.90779 -8.17276 -6.28776 -0.61669 0.05958 0.98093 1.09908 1.13637 1.38612 1.42139 1.45197 1.53052 2.43256 2.52631 2.71874 3.15688 3.59150 3.71838 3.76398 3.91025 3.99256 4.00274 4.02113 4.08268 4.10758 4.20905 4.47384 4.55363 4.64277 4.73345 4.80204 4.87325 4.99282 5.09254 5.16463 5.17004 5.19759 5.33366 5.38815 5.57997 5.58956 5.79943 5.89977 6.19958 6.27485 6.65926 6.89276 7.40624 8.94408 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.048119 B = 0.001492 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.749458 B =18756.677525 C =19302.074996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.098 4.098 12 C -0.105 4.105 13 C 0.470 3.530 14 O -0.531 6.531 15 O -0.351 6.351 16 C 0.012 3.988 17 C 0.406 3.594 18 O -0.464 6.464 19 C -0.166 4.166 20 C -0.063 4.063 21 C -0.109 4.109 22 C -0.072 4.072 23 C -0.059 4.059 24 Cl -0.067 7.067 25 C -0.066 4.066 26 H 0.263 0.737 27 H -0.012 1.012 28 H -0.011 1.011 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -35.647 -0.025 35.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.018 4.018 10 C -0.136 4.136 11 C -0.136 4.136 12 C -0.142 4.142 13 C 0.314 3.686 14 O -0.420 6.420 15 O -0.268 6.268 16 C -0.062 4.062 17 C 0.284 3.716 18 O -0.339 6.339 19 C -0.167 4.167 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.086 4.086 24 Cl -0.038 7.038 25 C -0.085 4.085 26 H 0.071 0.929 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.182 0.818 38 H 0.193 0.807 39 H 0.180 0.820 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.820 -35.617 -0.025 35.663 hybrid contribution 0.143 0.799 0.000 0.812 sum 1.963 -34.818 -0.025 34.873 Atomic orbital electron populations 1.70105 1.07907 1.27758 1.51774 1.26026 0.95763 1.03505 0.94796 0.85484 0.78220 0.77992 0.79235 1.19084 1.21025 1.19094 1.21741 0.93741 0.92380 1.50406 0.91763 1.19050 0.94655 0.93452 0.94660 1.21454 0.97969 0.92621 1.01534 1.21351 0.97319 0.92836 1.02114 1.21514 0.99051 0.85756 1.07920 1.24271 0.87112 0.86152 0.71028 1.90671 1.16614 1.88117 1.46600 1.86592 1.41376 1.14655 1.84184 1.23554 0.94328 0.80940 1.07364 1.22413 0.88804 0.89329 0.71104 1.90588 1.18536 1.88540 1.36285 1.20072 0.95358 0.92274 1.09017 1.21962 0.92774 0.99998 0.93373 1.21572 1.02177 0.90565 0.98368 1.21755 0.90297 1.02174 0.94853 1.20951 0.92439 0.88068 1.07142 1.98396 1.66587 1.41815 1.97002 1.21273 1.00989 0.90459 0.95738 0.92870 0.99310 0.99301 0.92017 0.92025 0.92718 0.92724 0.85526 0.85538 0.85451 0.85446 0.81783 0.80660 0.82017 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.87 5.15 30.59 0.16 -3.71 16 11 C -0.10 -3.27 4.51 30.60 0.14 -3.14 16 12 C -0.11 -2.57 5.81 29.85 0.17 -2.40 16 13 C 0.47 12.16 7.96 71.23 0.57 12.73 16 14 O -0.53 -16.31 15.73 21.95 0.35 -15.96 16 15 O -0.35 -8.28 9.75 -45.04 -0.44 -8.72 16 16 C 0.01 0.20 4.56 71.24 0.32 0.52 16 17 C 0.41 7.37 7.20 28.03 0.20 7.57 16 18 O -0.46 -12.13 16.49 15.85 0.26 -11.87 16 19 C -0.17 -2.24 5.87 -20.16 -0.12 -2.36 16 20 C -0.06 -0.45 9.47 22.58 0.21 -0.24 16 21 C -0.11 -0.49 10.03 22.22 0.22 -0.27 16 22 C -0.07 -0.50 9.82 22.37 0.22 -0.28 16 23 C -0.06 -0.71 6.31 22.28 0.14 -0.57 16 24 Cl -0.07 -0.85 28.95 -2.72 -0.08 -0.93 16 25 C -0.07 -0.98 9.38 22.60 0.21 -0.77 16 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 27 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.93 8.10 -2.39 -0.02 1.92 16 32 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 33 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 37 H 0.16 0.39 7.05 -2.91 -0.02 0.37 16 38 H 0.18 -0.31 8.06 -2.91 -0.02 -0.34 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.13 2.27 7.65 -2.91 -0.02 2.25 16 Total: -1.00 -75.98 368.75 6.74 -69.24 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.04 Total: 1.78 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.30 Total: -22.46 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.28 Total: -57.56 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: 0.17 Total: -36.55 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -75.98 6.74 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.653 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds