Wall clock time and date at job start Tue Mar 31 2020 14:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48501 * 109.46866 * 270.00038 * 3 2 1 5 5 H 1.48501 * 109.47078 * 29.99799 * 3 2 1 6 6 H 1.48493 * 109.47295 * 149.99805 * 3 2 1 7 7 C 1.37880 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47364 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47529 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47114 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00071 * 359.97438 * 13 12 11 15 15 O 1.34233 * 120.00152 * 179.97438 * 13 12 11 16 16 C 1.45194 * 116.99930 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47090 * 179.97438 * 16 15 13 18 18 O 1.21267 * 119.99837 * 0.02562 * 17 16 15 19 19 C 1.47084 * 119.99940 * 179.97438 * 17 16 15 20 20 C 1.39896 * 120.16015 * 359.72942 * 19 17 16 21 21 C 1.37816 * 119.83652 * 179.80805 * 20 19 17 22 22 C 1.38561 * 120.15980 * 0.44280 * 21 20 19 23 23 Cl 1.73600 * 119.83963 * 179.76325 * 22 21 20 24 24 C 1.38569 * 120.32356 * 359.78762 * 22 21 20 25 25 C 1.37816 * 120.15317 * 359.97438 * 24 22 21 26 26 H 0.97001 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46714 * 60.00582 * 9 7 2 28 28 H 1.09003 * 109.47502 * 300.00500 * 9 7 2 29 29 H 1.09003 * 109.46845 * 60.00520 * 10 9 7 30 30 H 1.09003 * 109.47104 * 300.00602 * 10 9 7 31 31 H 1.08997 * 109.47190 * 59.99210 * 11 10 9 32 32 H 1.09008 * 109.46616 * 299.99801 * 11 10 9 33 33 H 1.09003 * 109.47220 * 59.99842 * 12 11 10 34 34 H 1.08995 * 109.47044 * 299.99528 * 12 11 10 35 35 H 1.09001 * 109.46972 * 59.99949 * 16 15 13 36 36 H 1.09000 * 109.47619 * 300.00155 * 16 15 13 37 37 H 1.08002 * 120.08130 * 0.02562 * 20 19 17 38 38 H 1.08005 * 119.91742 * 180.18977 * 21 20 19 39 39 H 1.07998 * 119.92109 * 179.97438 * 24 22 21 40 40 H 1.07999 * 120.07234 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5129 -7.4551 -0.0005 15 8 2.3923 -8.6176 -0.0005 16 6 1.6015 -9.8353 0.0000 17 6 2.5195 -11.0305 -0.0007 18 8 3.7217 -10.8716 -0.0011 19 6 1.9573 -12.3896 0.0003 20 6 0.5709 -12.5768 0.0076 21 6 0.0513 -13.8532 0.0045 22 6 0.8985 -14.9497 0.0034 23 17 0.2350 -16.5539 0.0056 24 6 2.2727 -14.7720 0.0010 25 6 2.8065 -13.5014 -0.0009 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5572 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.8539 -5.0446 -0.8913 32 1 0.8534 -5.0451 0.8887 33 1 3.1007 -6.0923 0.8899 34 1 3.1018 -6.0922 -0.8901 35 1 0.9723 -9.8603 -0.8897 36 1 0.9730 -9.8600 0.8902 37 1 -0.0905 -11.7230 0.0121 38 1 -1.0188 -13.9992 0.0070 39 1 2.9270 -15.6312 0.0005 40 1 3.8778 -13.3644 -0.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:48 Heat of formation + Delta-G solvation = -126.149768 kcal Electronic energy + Delta-G solvation = -22680.158769 eV Core-core repulsion = 18871.325568 eV Total energy + Delta-G solvation = -3808.833201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98472 -40.24457 -38.85545 -37.07557 -36.65850 -35.00765 -32.72751 -32.39417 -31.73756 -30.19881 -28.92576 -25.89113 -24.37411 -23.43690 -22.67548 -20.68420 -20.57565 -20.04887 -18.23215 -17.54187 -17.05729 -17.02872 -16.43995 -16.16940 -15.80811 -15.50680 -15.10735 -14.58635 -14.58159 -14.37481 -14.28504 -14.01088 -13.21603 -13.02922 -12.85457 -12.64718 -12.29525 -12.20664 -12.08963 -11.76932 -11.68168 -11.50165 -11.04606 -11.00980 -10.66516 -10.60875 -10.51298 -10.47601 -10.24972 -9.82519 -9.66138 -9.46907 -9.29915 -9.03019 -8.32134 -5.97052 -3.99578 -0.17380 0.56678 1.40342 1.67244 2.17233 2.23631 2.97074 3.33685 3.39830 3.43008 3.44835 3.97935 4.13132 4.39503 4.47856 4.48627 4.60438 4.65585 4.69136 4.82383 4.87548 5.21024 5.21483 5.25138 5.37838 5.38631 5.46056 5.56352 5.69015 5.95081 6.03582 6.14196 6.23585 6.44719 6.74945 6.88724 6.92748 7.15054 7.67857 7.71467 7.85907 8.03557 8.45527 9.07931 9.64360 11.14229 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.047856 B = 0.001464 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.945579 B =19115.074470 C =19663.664368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.462 3.538 14 O -0.504 6.504 15 O -0.343 6.343 16 C 0.018 3.982 17 C 0.397 3.603 18 O -0.420 6.420 19 C -0.160 4.160 20 C -0.061 4.061 21 C -0.121 4.121 22 C -0.005 4.005 23 Cl -0.060 7.060 24 C -0.122 4.122 25 C -0.045 4.045 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -34.831 0.016 34.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.305 3.695 14 O -0.390 6.390 15 O -0.260 6.260 16 C -0.056 4.056 17 C 0.272 3.728 18 O -0.292 6.292 19 C -0.161 4.161 20 C -0.079 4.079 21 C -0.139 4.139 22 C -0.032 4.032 23 Cl -0.031 7.031 24 C -0.140 4.140 25 C -0.063 4.063 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.124 -34.797 0.022 34.862 hybrid contribution 0.025 0.633 -0.011 0.633 sum 2.150 -34.164 0.011 34.232 Atomic orbital electron populations 1.69969 1.06058 1.26543 1.50894 1.25034 0.94838 0.99247 0.95389 0.86603 0.79840 0.83532 0.78069 1.20697 1.21258 1.19891 1.21278 0.93044 0.91146 1.50505 0.92673 1.19098 0.94028 0.91235 0.97362 1.21657 0.99173 0.93489 1.00502 1.21590 0.97062 0.92669 1.03259 1.21639 0.99988 0.87380 1.05815 1.24377 0.87665 0.85681 0.71769 1.90677 1.15560 1.87697 1.45103 1.86629 1.40765 1.14025 1.84602 1.23219 0.94400 0.82635 1.05370 1.22126 0.89434 0.88452 0.72801 1.90597 1.16844 1.88008 1.33750 1.20377 0.94440 0.94272 1.07050 1.21509 0.93934 0.97563 0.94944 1.21089 1.00666 0.90837 1.01324 1.21338 0.93809 0.86758 1.01321 1.98408 1.85834 1.22327 1.96482 1.21094 0.93139 0.98243 1.01550 1.21394 1.00958 0.90475 0.93480 0.93038 0.96535 0.96535 0.93138 0.93146 0.91489 0.91497 0.87635 0.87633 0.87512 0.87505 0.83727 0.83853 0.83949 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.21 5.15 -26.73 -0.14 -2.34 16 11 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.11 -1.45 5.81 -27.89 -0.16 -1.61 16 13 C 0.46 6.29 7.96 36.01 0.29 6.57 16 14 O -0.50 -8.00 15.73 -18.75 -0.29 -8.29 16 15 O -0.34 -4.24 9.75 -45.91 -0.45 -4.69 16 16 C 0.02 0.17 4.55 36.01 0.16 0.33 16 17 C 0.40 3.57 7.19 -30.72 -0.22 3.35 16 18 O -0.42 -5.16 16.49 -14.09 -0.23 -5.39 16 19 C -0.16 -1.10 5.87 -105.07 -0.62 -1.71 16 20 C -0.06 -0.31 9.47 -39.12 -0.37 -0.68 16 21 C -0.12 -0.60 9.81 -39.62 -0.39 -0.99 16 22 C -0.01 -0.03 6.33 -39.34 -0.25 -0.28 16 23 Cl -0.06 -0.33 28.95 -51.86 -1.50 -1.84 16 24 C -0.12 -0.65 9.81 -39.61 -0.39 -1.04 16 25 C -0.04 -0.28 9.60 -39.11 -0.38 -0.66 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 1.18 8.10 -51.92 -0.42 0.76 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.15 0.46 7.05 -52.49 -0.37 0.09 16 38 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.15 0.86 7.65 -52.49 -0.40 0.46 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -34.09 368.74 -9.71 -43.79 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -5.38 Total: -5.12 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.13 Total: -14.29 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.98 Total: -18.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.09 -9.71 -43.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.356 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds