Wall clock time and date at job start Tue Mar 31 2020 14:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39675 * 120.98717 * 96.90866 * 3 2 1 5 5 C 1.38222 * 119.13252 * 179.97438 * 4 3 2 6 6 N 1.31926 * 121.21054 * 0.02562 * 5 4 3 7 7 C 1.31680 * 122.21093 * 359.96846 * 6 5 4 8 8 C 1.39454 * 120.69622 * 359.74853 * 7 6 5 9 9 C 1.47663 * 120.63322 * 180.28530 * 8 7 6 10 10 O 1.21472 * 119.99867 * 180.24667 * 9 8 7 11 11 O 1.34724 * 120.00155 * 0.24349 * 9 8 7 12 12 C 1.45204 * 116.99999 * 180.02562 * 11 9 8 13 13 C 1.50690 * 109.47105 * 180.02562 * 12 11 9 14 14 C 1.38303 * 119.93104 * 269.72806 * 13 12 11 15 15 C 1.38098 * 120.07120 * 179.73069 * 14 13 12 16 16 C 1.38881 * 119.93063 * 0.56225 * 15 14 13 17 17 O 1.35743 * 120.07148 * 179.68814 * 16 15 14 18 18 C 1.34836 * 117.00061 * 174.48748 * 17 16 15 19 19 H 1.08002 * 119.99911 * 5.05284 * 18 17 16 20 20 C 1.38653 * 119.99842 * 185.05747 * 18 17 16 21 21 N 1.31557 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99746 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47409 * 119.99898 * 22 20 18 25 25 H 1.48501 * 109.46822 * 239.99706 * 22 20 18 26 26 C 1.38885 * 119.85993 * 359.70757 * 16 15 14 27 27 C 1.38101 * 119.92916 * 359.97438 * 26 16 15 28 28 H 1.07997 * 120.43462 * 359.94395 * 4 3 2 29 29 H 1.07994 * 119.39692 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.65059 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.46755 * 300.00275 * 12 11 9 32 32 H 1.08994 * 109.47014 * 59.99885 * 12 11 9 33 33 H 1.08004 * 119.96540 * 359.97057 * 14 13 12 34 34 H 1.07997 * 120.03968 * 180.26965 * 15 14 13 35 35 H 0.97007 * 119.99876 * 179.97438 * 21 20 18 36 36 H 1.08002 * 120.03283 * 179.97438 * 26 16 15 37 37 H 1.07996 * 119.96400 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 0.1450 -1.1887 5 6 4.6685 0.1408 -1.1442 6 7 5.3153 0.0028 -0.0027 7 6 4.6884 -0.1367 1.1468 8 6 3.2950 -0.1386 1.2022 9 6 2.5934 -0.2888 2.4928 10 8 1.3792 -0.2934 2.5271 11 8 3.3000 -0.4208 3.6322 12 6 2.5442 -0.5648 4.8637 13 6 3.4958 -0.6984 6.0244 14 6 3.9286 -1.9506 6.4212 15 6 4.8050 -2.0761 7.4811 16 6 5.2427 -0.9440 8.1561 17 8 6.0993 -1.0645 9.2022 18 6 6.5736 0.0775 9.7397 19 1 6.2072 1.0316 9.3905 20 6 7.5319 0.0270 10.7405 21 7 7.9780 -1.1352 11.1660 22 14 8.1886 1.6092 11.4855 23 1 7.5299 2.7719 10.8380 24 1 7.9030 1.6261 12.9427 25 1 9.6555 1.6873 11.2677 26 6 4.8019 0.3117 7.7587 27 6 3.9306 0.4309 6.6939 28 1 2.7704 0.2579 -2.1303 29 1 5.2287 0.2517 -2.0608 30 1 5.2594 -0.2463 2.0569 31 1 1.9156 0.3138 5.0089 32 1 1.9171 -1.4542 4.8032 33 1 3.5838 -2.8310 5.8993 34 1 5.1461 -3.0538 7.7878 35 1 8.6487 -1.1705 11.8660 36 1 5.1402 1.1939 8.2819 37 1 3.5871 1.4070 6.3847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805715415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:45 Heat of formation + Delta-G solvation = -10.927827 kcal Electronic energy + Delta-G solvation = -24623.039942 eV Core-core repulsion = 20718.095645 eV Total energy + Delta-G solvation = -3904.944297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31677 -40.00310 -39.10432 -37.32318 -36.83589 -36.08786 -33.34839 -32.56519 -32.32628 -30.56601 -30.27921 -26.67626 -25.71380 -24.97069 -24.60506 -22.11245 -21.77303 -20.66833 -19.85419 -18.39809 -18.12632 -17.41410 -17.01244 -16.55780 -16.47105 -15.74626 -15.22601 -14.99706 -14.66478 -14.60452 -14.41386 -13.76692 -13.73097 -13.60261 -13.50961 -13.37211 -13.21689 -12.94172 -12.82457 -12.61310 -12.36806 -11.77806 -11.46157 -11.17804 -10.90144 -10.86969 -10.72581 -10.58645 -10.49433 -10.44959 -10.16652 -9.90998 -9.45266 -8.95123 -8.31934 -7.38894 -6.56266 -4.14803 -0.30580 0.23908 1.79243 2.10823 2.15406 2.27874 2.61620 2.63945 3.07061 3.08517 3.14074 3.17673 3.33758 3.77687 3.88034 4.07305 4.19158 4.29101 4.50866 4.69807 4.93165 4.99101 5.06188 5.08665 5.11825 5.17859 5.30186 5.52728 5.59323 5.71356 5.83050 6.08352 6.24692 6.28307 6.54414 6.75712 6.92309 7.06564 7.10032 7.20137 7.21639 7.31412 7.47308 7.66777 7.88510 8.89062 9.56291 10.61074 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020458 B = 0.002272 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.331842 B =12319.308942 C =12947.764734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C 0.243 3.757 3 C 0.085 3.915 4 C -0.141 4.141 5 C 0.138 3.862 6 N -0.472 5.472 7 C 0.171 3.829 8 C -0.139 4.139 9 C 0.504 3.496 10 O -0.498 6.498 11 O -0.340 6.340 12 C 0.132 3.868 13 C -0.208 4.208 14 C -0.047 4.047 15 C -0.196 4.196 16 C 0.164 3.836 17 O -0.170 6.170 18 C -0.393 4.393 19 H 0.095 0.905 20 C 0.040 3.960 21 N -0.857 5.857 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.238 4.238 27 C -0.043 4.043 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 2.912 -22.013 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.044 5.044 2 C -0.073 4.073 3 C 0.074 3.926 4 C -0.163 4.163 5 C -0.019 4.019 6 N -0.181 5.181 7 C 0.014 3.986 8 C -0.144 4.144 9 C 0.347 3.653 10 O -0.386 6.386 11 O -0.256 6.256 12 C 0.060 3.940 13 C -0.209 4.209 14 C -0.065 4.065 15 C -0.215 4.215 16 C 0.109 3.891 17 O -0.073 6.073 18 C -0.469 4.469 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.491 5.491 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.257 4.257 27 C -0.061 4.061 28 H 0.174 0.826 29 H 0.193 0.807 30 H 0.204 0.796 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.354 2.620 -21.622 22.688 hybrid contribution -0.300 0.811 0.527 1.012 sum -6.654 3.430 -21.095 22.384 Atomic orbital electron populations 1.81195 1.11594 1.04832 1.06780 1.24992 0.92080 0.95904 0.94339 1.16161 0.85584 0.97523 0.93317 1.22280 0.95694 1.00661 0.97653 1.23175 0.90945 0.90768 0.96995 1.67808 1.40888 1.10919 0.98455 1.23445 0.89544 0.88402 0.97218 1.20340 0.95598 1.07758 0.90745 1.20733 0.85810 0.73865 0.84862 1.90896 1.14524 1.45849 1.87373 1.86688 1.41590 1.81906 1.15424 1.21805 0.92120 1.02069 0.78004 1.18809 1.08198 0.94128 0.99788 1.20509 0.94893 0.95908 0.95207 1.20199 1.04309 0.97346 0.99649 1.19451 0.89454 0.93169 0.87018 1.83978 1.51420 1.34030 1.37844 1.21430 1.22118 0.84264 1.19101 0.88763 1.25339 0.95761 0.99001 0.96370 1.70047 1.27824 1.24150 1.27116 0.85616 0.78918 0.79797 0.78936 1.18991 1.20055 1.20004 1.21145 1.04581 0.97978 1.02015 1.20618 0.94627 0.96774 0.94086 0.82608 0.80741 0.79643 0.90910 0.90857 0.86849 0.86168 0.91857 0.85229 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.99 18.49 41.84 0.77 -4.22 16 2 C 0.24 2.70 12.93 -22.47 -0.29 2.41 16 3 C 0.09 0.71 5.79 -106.32 -0.62 0.10 16 4 C -0.14 -0.66 9.85 -39.05 -0.38 -1.05 16 5 C 0.14 0.64 11.16 -17.52 -0.20 0.44 16 6 N -0.47 -3.61 10.32 -12.96 -0.13 -3.74 16 7 C 0.17 1.42 10.78 -17.16 -0.19 1.24 16 8 C -0.14 -1.32 5.92 -104.48 -0.62 -1.94 16 9 C 0.50 6.28 7.88 34.58 0.27 6.55 16 10 O -0.50 -7.50 14.30 -19.24 -0.28 -7.77 16 11 O -0.34 -4.44 9.49 -40.56 -0.38 -4.83 16 12 C 0.13 1.82 5.60 36.00 0.20 2.02 16 13 C -0.21 -3.38 5.52 -104.58 -0.58 -3.96 16 14 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 15 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 16 C 0.16 3.77 6.65 -39.10 -0.26 3.51 16 17 O -0.17 -4.67 9.76 0.05 0.00 -4.66 16 18 C -0.39 -10.55 9.49 30.89 0.29 -10.26 16 19 H 0.10 2.33 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.33 13.67 55.48 0.76 -23.57 16 22 Si 0.94 19.78 29.55 -169.99 -5.02 14.75 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.24 -4.88 9.17 -39.39 -0.36 -5.24 16 27 C -0.04 -0.74 9.69 -39.61 -0.38 -1.12 16 28 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 29 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 30 H 0.19 1.44 7.62 -52.49 -0.40 1.04 16 31 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 32 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -32.88 345.74 -6.11 -38.99 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.06 Total: 1.63 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.98 Total: -11.79 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 1.40 Total: -31.53 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.66 Total: -17.26 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.88 -6.11 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805715415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.064 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds