Wall clock time and date at job start Tue Mar 31 2020 14:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39675 * 120.98717 * 96.90866 * 3 2 1 5 5 C 1.38222 * 119.13252 * 179.97438 * 4 3 2 6 6 N 1.31926 * 121.21054 * 0.02562 * 5 4 3 7 7 C 1.31680 * 122.21093 * 359.96846 * 6 5 4 8 8 C 1.39454 * 120.69622 * 359.74853 * 7 6 5 9 9 C 1.47663 * 120.63322 * 180.28530 * 8 7 6 10 10 O 1.21472 * 119.99867 * 180.24667 * 9 8 7 11 11 O 1.34724 * 120.00155 * 0.24349 * 9 8 7 12 12 C 1.45204 * 116.99999 * 180.02562 * 11 9 8 13 13 C 1.50690 * 109.47105 * 180.02562 * 12 11 9 14 14 C 1.38303 * 119.93104 * 269.72806 * 13 12 11 15 15 C 1.38098 * 120.07120 * 179.73069 * 14 13 12 16 16 C 1.38881 * 119.93063 * 0.56225 * 15 14 13 17 17 O 1.35743 * 120.07148 * 179.68814 * 16 15 14 18 18 C 1.34836 * 117.00061 * 174.48748 * 17 16 15 19 19 H 1.08002 * 119.99911 * 5.05284 * 18 17 16 20 20 C 1.38653 * 119.99842 * 185.05747 * 18 17 16 21 21 N 1.31557 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99746 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47075 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47409 * 119.99898 * 22 20 18 25 25 H 1.48501 * 109.46822 * 239.99706 * 22 20 18 26 26 C 1.38885 * 119.85993 * 359.70757 * 16 15 14 27 27 C 1.38101 * 119.92916 * 359.97438 * 26 16 15 28 28 H 1.07997 * 120.43462 * 359.94395 * 4 3 2 29 29 H 1.07994 * 119.39692 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.65059 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.46755 * 300.00275 * 12 11 9 32 32 H 1.08994 * 109.47014 * 59.99885 * 12 11 9 33 33 H 1.08004 * 119.96540 * 359.97057 * 14 13 12 34 34 H 1.07997 * 120.03968 * 180.26965 * 15 14 13 35 35 H 0.97007 * 119.99876 * 179.97438 * 21 20 18 36 36 H 1.08002 * 120.03283 * 179.97438 * 26 16 15 37 37 H 1.07996 * 119.96400 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 0.1450 -1.1887 5 6 4.6685 0.1408 -1.1442 6 7 5.3153 0.0028 -0.0027 7 6 4.6884 -0.1367 1.1468 8 6 3.2950 -0.1386 1.2022 9 6 2.5934 -0.2888 2.4928 10 8 1.3792 -0.2934 2.5271 11 8 3.3000 -0.4208 3.6322 12 6 2.5442 -0.5648 4.8637 13 6 3.4958 -0.6984 6.0244 14 6 3.9286 -1.9506 6.4212 15 6 4.8050 -2.0761 7.4811 16 6 5.2427 -0.9440 8.1561 17 8 6.0993 -1.0645 9.2022 18 6 6.5736 0.0775 9.7397 19 1 6.2072 1.0316 9.3905 20 6 7.5319 0.0270 10.7405 21 7 7.9780 -1.1352 11.1660 22 14 8.1886 1.6092 11.4855 23 1 7.5299 2.7719 10.8380 24 1 7.9030 1.6261 12.9427 25 1 9.6555 1.6873 11.2677 26 6 4.8019 0.3117 7.7587 27 6 3.9306 0.4309 6.6939 28 1 2.7704 0.2579 -2.1303 29 1 5.2287 0.2517 -2.0608 30 1 5.2594 -0.2463 2.0569 31 1 1.9156 0.3138 5.0089 32 1 1.9171 -1.4542 4.8032 33 1 3.5838 -2.8310 5.8993 34 1 5.1461 -3.0538 7.7878 35 1 8.6487 -1.1705 11.8660 36 1 5.1402 1.1939 8.2819 37 1 3.5871 1.4070 6.3847 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805715415.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:44 Heat of formation + Delta-G solvation = -30.938961 kcal Electronic energy + Delta-G solvation = -24623.907690 eV Core-core repulsion = 20718.095645 eV Total energy + Delta-G solvation = -3905.812045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09354 -40.98055 -40.60328 -38.61945 -37.94282 -37.27391 -34.37192 -33.99732 -33.05521 -31.98280 -31.78672 -27.97890 -27.10805 -25.98951 -25.43000 -23.68566 -22.72223 -22.11801 -20.51295 -19.89827 -19.24998 -18.93065 -18.07543 -17.58810 -17.32391 -16.44006 -16.37555 -16.30964 -16.08823 -15.57412 -15.54476 -15.42461 -15.10188 -14.62343 -14.38670 -14.33339 -14.29033 -14.17011 -14.07808 -13.83121 -13.51124 -13.24668 -13.05086 -12.65587 -12.42468 -12.29716 -12.09233 -11.85193 -11.76724 -11.20082 -11.10383 -10.83222 -10.74472 -10.42049 -9.83395 -9.06457 -8.48688 -6.16909 -0.96060 -0.28080 0.39900 0.56526 1.30866 1.37003 1.41055 1.45990 1.54939 1.60226 1.86673 2.17312 2.48188 2.71815 2.79981 3.11018 3.27439 3.45906 3.51475 3.59486 3.70540 3.85903 3.90497 4.12543 4.17344 4.29302 4.37164 4.43031 4.54993 4.66942 4.74519 4.84327 4.99243 5.12665 5.20479 5.23642 5.38201 5.50641 5.66685 5.68545 6.00837 6.12083 6.26013 6.46919 6.71713 6.96130 7.74065 8.74161 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020458 B = 0.002272 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.331842 B =12319.308942 C =12947.764734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.264 3.736 3 C 0.069 3.931 4 C -0.113 4.113 5 C 0.155 3.845 6 N -0.490 5.490 7 C 0.173 3.827 8 C -0.154 4.154 9 C 0.509 3.491 10 O -0.529 6.529 11 O -0.341 6.341 12 C 0.133 3.867 13 C -0.182 4.182 14 C -0.039 4.039 15 C -0.205 4.205 16 C 0.127 3.873 17 O -0.226 6.226 18 C -0.414 4.414 19 H 0.105 0.895 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.250 1.250 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.245 4.245 27 C -0.041 4.041 28 H 0.193 0.807 29 H 0.219 0.781 30 H 0.185 0.815 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.273 0.727 36 H 0.124 0.876 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 4.334 -25.827 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.052 4.052 3 C 0.058 3.942 4 C -0.135 4.135 5 C -0.002 4.002 6 N -0.199 5.199 7 C 0.017 3.983 8 C -0.160 4.160 9 C 0.354 3.646 10 O -0.419 6.419 11 O -0.258 6.258 12 C 0.060 3.940 13 C -0.183 4.183 14 C -0.057 4.057 15 C -0.224 4.224 16 C 0.076 3.924 17 O -0.132 6.132 18 C -0.490 4.490 19 H 0.122 0.878 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.193 1.193 26 C -0.264 4.264 27 C -0.059 4.059 28 H 0.211 0.789 29 H 0.236 0.764 30 H 0.202 0.798 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.141 0.859 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.815 4.045 -25.481 26.685 hybrid contribution -0.362 0.316 1.247 1.337 sum -7.177 4.360 -24.234 25.648 Atomic orbital electron populations 1.81204 1.13197 1.06986 1.08431 1.25427 0.92618 0.94305 0.92843 1.16339 0.84201 0.99252 0.94369 1.22719 0.95672 0.97501 0.97588 1.23942 0.91109 0.87791 0.97367 1.67880 1.41445 1.11473 0.99060 1.23379 0.88819 0.88321 0.97807 1.20131 0.95951 1.10413 0.89514 1.21176 0.85532 0.72655 0.85258 1.90894 1.15798 1.47550 1.87680 1.86645 1.41429 1.82187 1.15500 1.21725 0.91324 1.03394 0.77528 1.19172 1.06054 0.93499 0.99543 1.20896 0.93282 0.97710 0.93787 1.20445 1.04993 0.96672 1.00339 1.20007 0.89851 0.95205 0.87357 1.83951 1.54146 1.34603 1.40485 1.21891 1.22641 0.84820 1.19601 0.87801 1.26594 0.95831 1.02814 0.96678 1.70186 1.29659 1.26848 1.28845 0.84527 0.78274 0.75435 0.77980 1.17351 1.19475 1.19328 1.21240 1.05322 0.96882 1.02954 1.20953 0.93376 0.98827 0.92710 0.78936 0.76427 0.79842 0.89843 0.89566 0.83228 0.86294 0.91747 0.85868 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.19 18.49 19.00 0.35 -10.84 16 2 C 0.26 5.47 12.93 88.33 1.14 6.61 16 3 C 0.07 0.97 5.79 -20.97 -0.12 0.85 16 4 C -0.11 -0.54 9.85 22.61 0.22 -0.32 16 5 C 0.15 0.66 11.16 84.67 0.95 1.60 16 6 N -0.49 -5.76 10.32 -194.93 -2.01 -7.77 16 7 C 0.17 2.46 10.78 85.01 0.92 3.38 16 8 C -0.15 -2.61 5.92 -19.77 -0.12 -2.72 16 9 C 0.51 11.78 7.88 70.31 0.55 12.33 16 10 O -0.53 -15.26 14.30 19.93 0.29 -14.97 16 11 O -0.34 -8.12 9.49 -56.34 -0.53 -8.65 16 12 C 0.13 3.26 5.60 71.23 0.40 3.65 16 13 C -0.18 -5.44 5.52 -19.84 -0.11 -5.55 16 14 C -0.04 -1.23 9.69 22.25 0.22 -1.01 16 15 C -0.21 -8.29 9.99 22.39 0.22 -8.06 16 16 C 0.13 6.06 6.65 22.58 0.15 6.21 16 17 O -0.23 -13.18 9.76 -22.73 -0.22 -13.40 16 18 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 19 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 20 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 21 N -0.92 -55.13 13.67 21.61 0.30 -54.84 16 22 Si 1.02 41.71 29.55 68.60 2.03 43.74 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.24 -10.14 9.17 22.39 0.21 -9.93 16 27 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 28 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 29 H 0.22 -0.96 8.06 -2.91 -0.02 -0.98 16 30 H 0.18 2.55 7.62 -2.91 -0.02 2.52 16 31 H 0.08 1.93 8.08 -2.39 -0.02 1.92 16 32 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 33 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -78.32 345.74 7.28 -71.04 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.14 Total: 13.19 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 5.95 Total: -17.50 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.37 Total: -73.44 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.47 Total: -37.02 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -78.32 7.28 -71.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805715415.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.100 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds