Wall clock time and date at job start Tue Mar 31 2020 14:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46878 * 179.97438 * 12 11 10 14 14 O 1.20823 * 120.00085 * 359.97438 * 13 12 11 15 15 O 1.34236 * 120.00010 * 180.02562 * 13 12 11 16 16 C 1.45197 * 116.99873 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.83653 * 327.72917 * 16 15 13 18 18 C 1.54706 * 110.94475 * 91.44999 * 16 15 13 19 19 O 1.43763 * 102.79552 * 92.78258 * 18 16 15 20 20 C 1.36128 * 109.29196 * 27.55589 * 19 18 16 21 21 C 1.39265 * 129.87383 * 161.46756 * 20 19 18 22 22 C 1.38044 * 120.23768 * 179.61220 * 21 20 19 23 23 Cl 1.73598 * 119.83842 * 179.97438 * 22 21 20 24 24 C 1.38403 * 120.32457 * 359.97333 * 22 21 20 25 25 C 1.38329 * 119.74842 * 0.19654 * 24 22 21 26 26 C 1.37748 * 119.99814 * 359.97438 * 25 24 22 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 33 33 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 34 34 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 35 35 H 1.08994 * 109.47547 * 59.99832 * 12 11 10 36 36 H 1.09008 * 110.75119 * 211.10504 * 18 16 15 37 37 H 1.09001 * 110.74906 * 334.45242 * 18 16 15 38 38 H 1.08002 * 119.87970 * 359.57258 * 21 20 19 39 39 H 1.07995 * 120.12491 * 180.21443 * 24 22 21 40 40 H 1.08005 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7207 -7.4551 -0.0274 14 8 0.5125 -7.4550 -0.0275 15 8 2.3918 -8.6176 -0.0315 16 6 1.6009 -9.8353 -0.0365 17 1 0.6671 -9.6933 0.5075 18 6 1.3310 -10.3135 -1.4828 19 8 2.4143 -11.2276 -1.7232 20 6 2.8210 -11.7641 -0.5401 21 6 3.5682 -12.9126 -0.2905 22 6 3.8778 -13.2724 1.0057 23 17 4.8092 -14.7065 1.3050 24 6 3.4493 -12.4955 2.0679 25 6 2.7038 -11.3553 1.8276 26 6 2.3910 -10.9968 0.5349 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 0.8531 -5.0490 0.8724 33 1 0.8537 -5.0406 -0.9075 34 1 3.1015 -6.0883 -0.9108 35 1 3.1002 -6.0964 0.8691 36 1 0.3714 -10.8266 -1.5472 37 1 1.3701 -9.4765 -2.1799 38 1 3.9060 -13.5242 -1.1140 39 1 3.6963 -12.7781 3.0806 40 1 2.3669 -10.7463 2.6535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805931255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:24 Heat of formation + Delta-G solvation = -114.061468 kcal Electronic energy + Delta-G solvation = -23503.901133 eV Core-core repulsion = 19695.592120 eV Total energy + Delta-G solvation = -3808.309013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92205 -40.31887 -38.32228 -36.76405 -36.73246 -35.05014 -32.80920 -32.43007 -30.73489 -30.03066 -29.28358 -26.07185 -24.30109 -23.25001 -22.71982 -21.96471 -20.68360 -20.08925 -18.35491 -17.82796 -17.39701 -16.94344 -16.32680 -16.19924 -16.19080 -15.86632 -14.73253 -14.66658 -14.46731 -14.35837 -14.02727 -13.80084 -13.25762 -12.95943 -12.78732 -12.45403 -12.33747 -12.27446 -11.92061 -11.78703 -11.69463 -11.44570 -11.31970 -11.05523 -10.91254 -10.65398 -10.64157 -10.51805 -10.46535 -9.69636 -9.43641 -9.32380 -9.04414 -8.80550 -8.34637 -5.99314 -4.01823 0.39609 0.73786 1.46775 2.08942 2.35967 2.73700 3.12880 3.31032 3.38517 3.42458 3.75030 3.86282 4.17257 4.45101 4.46422 4.55147 4.56122 4.74928 4.87587 4.99871 5.03970 5.19312 5.20666 5.23462 5.36453 5.51114 5.63767 5.64016 5.75643 5.82130 5.99259 6.11027 6.20247 6.40797 6.50074 6.71198 6.89091 7.11882 7.62333 7.69198 7.83113 8.01228 8.43076 9.05876 9.62233 11.11992 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.001752 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.531959 B =15979.591309 C =16361.172988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.459 3.541 14 O -0.502 6.502 15 O -0.342 6.342 16 C 0.100 3.900 17 H 0.116 0.884 18 C 0.040 3.960 19 O -0.291 6.291 20 C 0.141 3.859 21 C -0.138 4.138 22 C 0.011 3.989 23 Cl -0.056 7.056 24 C -0.143 4.143 25 C -0.033 4.033 26 C -0.178 4.178 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -30.649 1.738 31.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.388 6.388 15 O -0.260 6.260 16 C 0.045 3.955 17 H 0.134 0.866 18 C -0.035 4.035 19 O -0.204 6.204 20 C 0.094 3.906 21 C -0.157 4.157 22 C -0.016 4.016 23 Cl -0.027 7.027 24 C -0.162 4.162 25 C -0.051 4.051 26 C -0.179 4.179 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.135 -30.720 1.521 31.364 hybrid contribution 0.280 0.903 0.080 0.949 sum 6.415 -29.817 1.601 30.541 Atomic orbital electron populations 1.69982 1.06056 1.26453 1.50939 1.25045 0.94854 0.99291 0.95399 0.86545 0.80097 0.83837 0.77562 1.19750 1.21037 1.21041 1.21311 0.93067 0.91116 1.50414 0.92621 1.19103 0.94027 0.91251 0.97374 1.21654 0.99169 0.93489 1.00484 1.21590 0.97051 0.92663 1.03276 1.21658 1.00007 0.87500 1.05736 1.24416 0.87781 0.85894 0.71645 1.90676 1.15542 1.87579 1.44996 1.86750 1.41170 1.13997 1.84116 1.22601 0.95051 0.81561 0.96257 0.86605 1.24333 0.89773 0.93126 0.96278 1.86892 1.49563 1.57040 1.26919 1.19284 0.94085 0.92252 0.84933 1.19967 1.03531 0.95963 0.96239 1.20493 0.96927 0.90411 0.93726 1.98396 1.71423 1.36823 1.96086 1.20966 1.00803 0.95509 0.98903 1.20324 0.94471 0.95114 0.95204 1.20502 1.06462 0.96429 0.94517 0.93075 0.96534 0.96526 0.93158 0.93153 0.91492 0.91476 0.87673 0.87691 0.88046 0.86336 0.83926 0.83891 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.16 5.15 -26.74 -0.14 -2.30 16 11 C -0.11 -1.78 4.50 -26.73 -0.12 -1.90 16 12 C -0.11 -1.40 5.81 -27.88 -0.16 -1.56 16 13 C 0.46 6.01 7.96 36.01 0.29 6.30 16 14 O -0.50 -7.78 15.28 -18.75 -0.29 -8.06 16 15 O -0.34 -4.07 10.00 -39.27 -0.39 -4.46 16 16 C 0.10 1.01 3.39 -26.52 -0.09 0.92 16 17 H 0.12 1.11 7.32 -51.93 -0.38 0.73 16 18 C 0.04 0.35 7.76 38.06 0.30 0.65 16 19 O -0.29 -3.03 11.10 -20.15 -0.22 -3.26 16 20 C 0.14 1.38 7.04 -38.95 -0.27 1.11 16 21 C -0.14 -1.17 9.84 -39.27 -0.39 -1.56 16 22 C 0.01 0.09 6.31 -39.59 -0.25 -0.16 16 23 Cl -0.06 -0.40 28.94 -51.86 -1.50 -1.90 16 24 C -0.14 -1.01 9.84 -39.49 -0.39 -1.40 16 25 C -0.03 -0.26 10.03 -39.73 -0.40 -0.65 16 26 C -0.18 -1.69 5.98 -104.09 -0.62 -2.31 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.12 1.01 8.12 -51.93 -0.42 0.59 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -32.40 361.48 -9.45 -41.85 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.41 Total: -3.85 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.80 Total: -16.06 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.90 Total: -15.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.40 -9.45 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.208 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds