Wall clock time and date at job start Tue Mar 31 2020 14:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46838 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46878 * 179.97438 * 12 11 10 14 14 O 1.20823 * 120.00085 * 359.97438 * 13 12 11 15 15 O 1.34236 * 120.00010 * 180.02562 * 13 12 11 16 16 C 1.45197 * 116.99873 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.83653 * 327.72917 * 16 15 13 18 18 C 1.54706 * 110.94475 * 91.44999 * 16 15 13 19 19 O 1.43763 * 102.79552 * 92.78258 * 18 16 15 20 20 C 1.36128 * 109.29196 * 27.55589 * 19 18 16 21 21 C 1.39265 * 129.87383 * 161.46756 * 20 19 18 22 22 C 1.38044 * 120.23768 * 179.61220 * 21 20 19 23 23 Cl 1.73598 * 119.83842 * 179.97438 * 22 21 20 24 24 C 1.38403 * 120.32457 * 359.97333 * 22 21 20 25 25 C 1.38329 * 119.74842 * 0.19654 * 24 22 21 26 26 C 1.37748 * 119.99814 * 359.97438 * 25 24 22 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 33 33 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 34 34 H 1.08998 * 109.46943 * 299.99126 * 12 11 10 35 35 H 1.08994 * 109.47547 * 59.99832 * 12 11 10 36 36 H 1.09008 * 110.75119 * 211.10504 * 18 16 15 37 37 H 1.09001 * 110.74906 * 334.45242 * 18 16 15 38 38 H 1.08002 * 119.87970 * 359.57258 * 21 20 19 39 39 H 1.07995 * 120.12491 * 180.21443 * 24 22 21 40 40 H 1.08005 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 6 2.4743 -6.1500 -0.0215 13 6 1.7207 -7.4551 -0.0274 14 8 0.5125 -7.4550 -0.0275 15 8 2.3918 -8.6176 -0.0315 16 6 1.6009 -9.8353 -0.0365 17 1 0.6671 -9.6933 0.5075 18 6 1.3310 -10.3135 -1.4828 19 8 2.4143 -11.2276 -1.7232 20 6 2.8210 -11.7641 -0.5401 21 6 3.5682 -12.9126 -0.2905 22 6 3.8778 -13.2724 1.0057 23 17 4.8092 -14.7065 1.3050 24 6 3.4493 -12.4955 2.0679 25 6 2.7038 -11.3553 1.8276 26 6 2.3910 -10.9968 0.5349 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 0.8531 -5.0490 0.8724 33 1 0.8537 -5.0406 -0.9075 34 1 3.1015 -6.0883 -0.9108 35 1 3.1002 -6.0964 0.8691 36 1 0.3714 -10.8266 -1.5472 37 1 1.3701 -9.4765 -2.1799 38 1 3.9060 -13.5242 -1.1140 39 1 3.6963 -12.7781 3.0806 40 1 2.3669 -10.7463 2.6535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805931255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:23 Heat of formation + Delta-G solvation = -130.705475 kcal Electronic energy + Delta-G solvation = -23504.622871 eV Core-core repulsion = 19695.592120 eV Total energy + Delta-G solvation = -3809.030751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.65764 -41.27253 -38.95433 -37.76969 -37.32644 -36.62932 -34.67213 -33.23521 -31.68128 -31.28942 -30.03727 -27.75498 -25.28790 -24.37762 -23.57184 -22.84070 -21.99743 -21.47769 -19.18927 -18.65138 -18.40701 -18.12790 -17.73891 -17.23016 -16.89760 -16.76741 -16.45445 -15.94644 -15.39626 -15.04656 -14.78112 -14.58440 -14.47691 -14.21318 -14.03374 -13.58288 -13.49713 -13.40788 -13.06919 -12.95462 -12.86059 -12.51260 -12.33114 -12.20445 -12.19197 -12.06579 -12.02083 -11.68623 -11.65543 -11.38320 -11.29139 -11.04993 -10.54682 -10.04491 -9.45968 -8.18601 -6.29884 -0.25284 0.12230 0.87681 1.08143 1.41359 1.41503 1.49944 1.55163 2.08036 2.42070 2.46271 3.04504 3.14637 3.16345 3.48602 3.70287 3.85871 3.94050 4.00133 4.08312 4.09341 4.24597 4.28777 4.39930 4.56327 4.63072 4.63303 4.78427 4.86135 4.89087 5.05147 5.13569 5.15012 5.18377 5.25764 5.32525 5.38327 5.57442 5.78834 5.83529 5.89191 6.26330 6.62910 6.88829 7.39673 8.93553 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.001752 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.531959 B =15979.591309 C =16361.172988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.099 4.099 12 C -0.104 4.104 13 C 0.467 3.533 14 O -0.532 6.532 15 O -0.343 6.343 16 C 0.095 3.905 17 H 0.118 0.882 18 C 0.038 3.962 19 O -0.306 6.306 20 C 0.123 3.877 21 C -0.143 4.143 22 C 0.008 3.992 23 Cl -0.049 7.049 24 C -0.137 4.137 25 C -0.035 4.035 26 C -0.190 4.190 27 H 0.262 0.738 28 H -0.012 1.012 29 H -0.012 1.012 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -31.338 2.346 32.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.141 4.141 13 C 0.312 3.688 14 O -0.421 6.421 15 O -0.260 6.260 16 C 0.040 3.960 17 H 0.135 0.865 18 C -0.036 4.036 19 O -0.220 6.220 20 C 0.077 3.923 21 C -0.162 4.162 22 C -0.019 4.019 23 Cl -0.020 7.020 24 C -0.156 4.156 25 C -0.053 4.053 26 C -0.191 4.191 27 H 0.071 0.929 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.137 -31.436 2.130 32.542 hybrid contribution -0.345 1.021 -0.084 1.081 sum 7.791 -30.415 2.046 31.464 Atomic orbital electron populations 1.70126 1.07934 1.27627 1.51968 1.26050 0.95779 1.03591 0.94882 0.85369 0.79201 0.78643 0.77643 1.18240 1.20551 1.20529 1.21794 0.93757 0.92301 1.50049 0.91678 1.19062 0.94687 0.93551 0.94620 1.21445 0.97926 0.92519 1.01596 1.21352 0.97361 0.92962 1.02019 1.21527 0.98972 0.85580 1.08013 1.24372 0.87230 0.86416 0.70806 1.90673 1.16819 1.88021 1.46561 1.86720 1.41362 1.14241 1.83715 1.22794 0.95035 0.80933 0.97230 0.86466 1.24457 0.90410 0.93234 0.95515 1.86855 1.50167 1.57430 1.27552 1.19470 0.94996 0.93003 0.84837 1.20131 1.03322 0.95797 0.96972 1.20619 0.96873 0.90716 0.93719 1.98401 1.71205 1.36411 1.96013 1.21254 0.99718 0.94785 0.99809 1.20590 0.94145 0.95465 0.95076 1.20599 1.07082 0.96250 0.95202 0.92888 0.99356 0.99381 0.91971 0.91906 0.92854 0.92852 0.85415 0.85326 0.85971 0.86384 0.83139 0.81637 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 2 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.02 0.95 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.75 5.15 30.59 0.16 -3.60 16 11 C -0.10 -3.23 4.50 30.59 0.14 -3.09 16 12 C -0.10 -2.40 5.81 29.85 0.17 -2.23 16 13 C 0.47 11.72 7.96 71.24 0.57 12.29 16 14 O -0.53 -16.42 15.28 21.97 0.34 -16.08 16 15 O -0.34 -7.72 10.00 -51.48 -0.51 -8.24 16 16 C 0.09 1.83 3.39 30.73 0.10 1.93 16 17 H 0.12 2.20 7.32 -2.39 -0.02 2.18 16 18 C 0.04 0.66 7.76 72.56 0.56 1.22 16 19 O -0.31 -6.26 11.10 -95.01 -1.05 -7.31 16 20 C 0.12 2.33 7.04 22.68 0.16 2.49 16 21 C -0.14 -2.29 9.84 22.47 0.22 -2.07 16 22 C 0.01 0.11 6.31 22.26 0.14 0.25 16 23 Cl -0.05 -0.62 28.94 -2.72 -0.08 -0.70 16 24 C -0.14 -1.65 9.84 22.33 0.22 -1.43 16 25 C -0.03 -0.48 10.03 22.18 0.22 -0.25 16 26 C -0.19 -3.40 5.98 -19.52 -0.12 -3.52 16 27 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 28 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 30 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.05 1.86 8.10 -2.39 -0.02 1.85 16 34 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.12 1.98 8.12 -2.39 -0.02 1.96 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -70.55 361.48 5.44 -65.12 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.05 Total: 5.69 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.39 Total: -27.27 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.28 Total: -57.49 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.23 Total: -31.63 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -70.55 5.44 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.589 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds