Wall clock time and date at job start Tue Mar 31 2020 14:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.20819 * 120.00296 * 359.97438 * 13 12 11 15 15 O 1.34229 * 119.99505 * 179.97438 * 13 12 11 16 16 C 1.45203 * 116.99579 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.83306 * 32.27075 * 16 15 13 18 18 C 1.54706 * 110.94456 * 268.54527 * 16 15 13 19 19 O 1.43766 * 102.79781 * 216.48254 * 18 16 15 20 20 C 1.36133 * 109.29027 * 27.55223 * 19 18 16 21 21 C 1.39261 * 129.86964 * 161.46546 * 20 19 18 22 22 C 1.38046 * 120.23578 * 179.62618 * 21 20 19 23 23 Cl 1.73594 * 119.84040 * 179.97438 * 22 21 20 24 24 C 1.38408 * 120.32322 * 359.96633 * 22 21 20 25 25 C 1.38329 * 119.75020 * 0.20026 * 24 22 21 26 26 C 1.37746 * 119.99593 * 359.97438 * 25 24 22 27 27 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 29 29 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 30 30 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 31 31 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 32 32 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 34 34 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 36 36 H 1.09005 * 110.74636 * 334.80113 * 18 16 15 37 37 H 1.08997 * 110.74982 * 97.97063 * 18 16 15 38 38 H 1.08000 * 119.88674 * 359.57936 * 21 20 19 39 39 H 1.08003 * 120.12417 * 180.17134 * 24 22 21 40 40 H 1.07996 * 120.00342 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5130 -7.4551 0.0018 15 8 2.3924 -8.6175 0.0018 16 6 1.6015 -9.8353 0.0024 17 1 0.6678 -9.6914 -0.5412 18 6 1.3317 -10.3187 1.4470 19 8 1.3929 -11.7495 1.3206 20 6 2.2099 -12.0747 0.2815 21 6 2.8445 -13.2790 -0.0122 22 6 3.6338 -13.3921 -1.1391 23 17 4.4206 -14.8981 -1.4950 24 6 3.8009 -12.3108 -1.9867 25 6 3.1764 -11.1104 -1.6992 26 6 2.3913 -10.9949 -0.5733 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6042 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8541 -5.0445 0.8914 34 1 3.1014 -6.0927 -0.8882 35 1 3.1013 -6.0918 0.8917 36 1 2.1045 -9.9577 2.1257 37 1 0.3450 -9.9998 1.7830 38 1 2.7193 -14.1274 0.6443 39 1 4.4169 -12.4036 -2.8689 40 1 3.3036 -10.2641 -2.3580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805931256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:27 Heat of formation + Delta-G solvation = -114.674376 kcal Electronic energy + Delta-G solvation = -23456.651638 eV Core-core repulsion = 19648.316047 eV Total energy + Delta-G solvation = -3808.335591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91486 -40.39396 -38.32633 -36.87875 -36.72079 -35.07206 -32.81407 -32.39450 -30.74286 -30.05152 -29.27568 -26.07634 -24.28046 -23.34274 -22.73815 -21.92652 -20.68758 -20.10874 -18.29984 -18.02553 -17.46824 -16.78383 -16.35266 -16.24857 -16.16476 -15.74139 -14.84665 -14.64752 -14.48348 -14.28970 -14.07513 -13.82491 -13.41491 -13.09600 -12.77600 -12.52076 -12.37522 -12.27736 -11.90090 -11.79534 -11.70827 -11.49801 -11.20743 -11.06742 -10.95326 -10.67589 -10.65880 -10.53480 -10.47781 -9.71070 -9.41392 -9.33839 -9.05356 -8.78201 -8.35469 -6.00080 -4.02750 0.43582 0.72616 1.47420 2.05817 2.28138 2.72063 3.11986 3.30375 3.37911 3.41652 3.73736 3.84979 4.18775 4.43433 4.45286 4.53595 4.59044 4.72540 4.88884 5.00083 5.05095 5.15809 5.16360 5.28989 5.35659 5.48369 5.61500 5.64283 5.76793 5.81955 5.97215 6.08784 6.18026 6.39033 6.46781 6.69458 6.87432 7.10502 7.58622 7.68168 7.81970 8.00330 8.42029 9.04975 9.61412 11.11217 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.001735 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.556401 B =16137.672559 C =16701.432939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.111 4.111 13 C 0.459 3.541 14 O -0.499 6.499 15 O -0.342 6.342 16 C 0.103 3.897 17 H 0.117 0.883 18 C 0.038 3.962 19 O -0.290 6.290 20 C 0.131 3.869 21 C -0.134 4.134 22 C 0.007 3.993 23 Cl -0.057 7.057 24 C -0.139 4.139 25 C -0.035 4.035 26 C -0.172 4.172 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -29.881 -1.480 30.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.148 4.148 13 C 0.302 3.698 14 O -0.385 6.385 15 O -0.260 6.260 16 C 0.047 3.953 17 H 0.134 0.866 18 C -0.037 4.037 19 O -0.204 6.204 20 C 0.085 3.915 21 C -0.153 4.153 22 C -0.020 4.020 23 Cl -0.028 7.028 24 C -0.158 4.158 25 C -0.053 4.053 26 C -0.173 4.173 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.145 -30.062 -1.344 30.929 hybrid contribution 0.332 0.927 -0.051 0.986 sum 7.476 -29.135 -1.395 30.111 Atomic orbital electron populations 1.69981 1.06055 1.26470 1.50910 1.25044 0.94852 0.99292 0.95389 0.86546 0.80084 0.83845 0.77572 1.19754 1.21034 1.21037 1.21305 0.93061 0.91114 1.50454 0.92622 1.19103 0.94030 0.91252 0.97388 1.21651 0.99167 0.93477 1.00475 1.21598 0.97065 0.92666 1.03319 1.21656 0.99997 0.87426 1.05744 1.24432 0.87812 0.85855 0.71708 1.90686 1.15570 1.87504 1.44768 1.86705 1.40889 1.14079 1.84313 1.22636 0.94933 0.81376 0.96340 0.86573 1.24358 1.05392 0.77584 0.96329 1.86913 1.61168 1.23852 1.48432 1.19164 0.90699 0.94172 0.87464 1.19954 0.99426 0.97101 0.98835 1.20482 0.97308 0.88358 0.95874 1.98395 1.78889 1.31142 1.94354 1.20997 1.02784 0.91326 1.00687 1.20307 0.92986 0.97323 0.94704 1.20534 1.03881 0.94823 0.98080 0.93063 0.96532 0.96520 0.93156 0.93150 0.91464 0.91465 0.87653 0.87638 0.88807 0.85901 0.83913 0.83888 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.49 4.97 -27.89 -0.14 0.35 16 10 C -0.11 -2.13 5.15 -26.74 -0.14 -2.26 16 11 C -0.11 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.11 -1.33 5.81 -27.88 -0.16 -1.49 16 13 C 0.46 5.78 7.96 36.01 0.29 6.07 16 14 O -0.50 -7.68 15.28 -18.74 -0.29 -7.97 16 15 O -0.34 -3.77 10.00 -39.25 -0.39 -4.16 16 16 C 0.10 1.03 3.39 -26.52 -0.09 0.94 16 17 H 0.12 1.21 7.32 -51.93 -0.38 0.83 16 18 C 0.04 0.34 7.77 38.06 0.30 0.64 16 19 O -0.29 -2.91 11.10 -20.16 -0.22 -3.14 16 20 C 0.13 1.26 7.04 -38.96 -0.27 0.99 16 21 C -0.13 -1.12 9.84 -39.27 -0.39 -1.51 16 22 C 0.01 0.05 6.31 -39.59 -0.25 -0.20 16 23 Cl -0.06 -0.40 28.94 -51.86 -1.50 -1.90 16 24 C -0.14 -1.00 9.84 -39.49 -0.39 -1.39 16 25 C -0.03 -0.28 10.03 -39.73 -0.40 -0.68 16 26 C -0.17 -1.64 5.99 -104.09 -0.62 -2.26 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 33 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -31.90 361.48 -9.45 -41.35 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.41 Total: -3.76 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.80 Total: -16.15 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.90 Total: -15.27 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.90 -9.45 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.320 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds