Wall clock time and date at job start Tue Mar 31 2020 14:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99493 * 3 2 1 6 6 H 1.48498 * 109.47326 * 59.99268 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.20819 * 120.00296 * 359.97438 * 13 12 11 15 15 O 1.34229 * 119.99505 * 179.97438 * 13 12 11 16 16 C 1.45203 * 116.99579 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.83306 * 32.27075 * 16 15 13 18 18 C 1.54706 * 110.94456 * 268.54527 * 16 15 13 19 19 O 1.43766 * 102.79781 * 216.48254 * 18 16 15 20 20 C 1.36133 * 109.29027 * 27.55223 * 19 18 16 21 21 C 1.39261 * 129.86964 * 161.46546 * 20 19 18 22 22 C 1.38046 * 120.23578 * 179.62618 * 21 20 19 23 23 Cl 1.73594 * 119.84040 * 179.97438 * 22 21 20 24 24 C 1.38408 * 120.32322 * 359.96633 * 22 21 20 25 25 C 1.38329 * 119.75020 * 0.20026 * 24 22 21 26 26 C 1.37746 * 119.99593 * 359.97438 * 25 24 22 27 27 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 29 29 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 30 30 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 31 31 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 32 32 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 34 34 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 36 36 H 1.09005 * 110.74636 * 334.80113 * 18 16 15 37 37 H 1.08997 * 110.74982 * 97.97063 * 18 16 15 38 38 H 1.08000 * 119.88674 * 359.57936 * 21 20 19 39 39 H 1.08003 * 120.12417 * 180.17134 * 24 22 21 40 40 H 1.07996 * 120.00342 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5130 -7.4551 0.0018 15 8 2.3924 -8.6175 0.0018 16 6 1.6015 -9.8353 0.0024 17 1 0.6678 -9.6914 -0.5412 18 6 1.3317 -10.3187 1.4470 19 8 1.3929 -11.7495 1.3206 20 6 2.2099 -12.0747 0.2815 21 6 2.8445 -13.2790 -0.0122 22 6 3.6338 -13.3921 -1.1391 23 17 4.4206 -14.8981 -1.4950 24 6 3.8009 -12.3108 -1.9867 25 6 3.1764 -11.1104 -1.6992 26 6 2.3913 -10.9949 -0.5733 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6042 -0.8894 32 1 0.8534 -5.0451 -0.8886 33 1 0.8541 -5.0445 0.8914 34 1 3.1014 -6.0927 -0.8882 35 1 3.1013 -6.0918 0.8917 36 1 2.1045 -9.9577 2.1257 37 1 0.3450 -9.9998 1.7830 38 1 2.7193 -14.1274 0.6443 39 1 4.4169 -12.4036 -2.8689 40 1 3.3036 -10.2641 -2.3580 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805931256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:26 Heat of formation + Delta-G solvation = -130.879989 kcal Electronic energy + Delta-G solvation = -23457.354366 eV Core-core repulsion = 19648.316047 eV Total energy + Delta-G solvation = -3809.038319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.64770 -41.33259 -38.95686 -37.86033 -37.32130 -36.63106 -34.66858 -33.19981 -31.67517 -31.30182 -30.04440 -27.74337 -25.24801 -24.46352 -23.58583 -22.85963 -21.95635 -21.46945 -19.02260 -18.94018 -18.39403 -18.21203 -17.58738 -17.20754 -17.01598 -16.57061 -16.39875 -16.00795 -15.44086 -15.02826 -14.74528 -14.59398 -14.47459 -14.41429 -14.01430 -13.74779 -13.54154 -13.38518 -13.10231 -12.93015 -12.85990 -12.53809 -12.32708 -12.19615 -12.19190 -12.13602 -11.86901 -11.78372 -11.60312 -11.37388 -11.28658 -11.04520 -10.54423 -10.03120 -9.44115 -8.18275 -6.29633 -0.21326 0.10391 0.87984 1.07765 1.40515 1.41805 1.42283 1.55361 2.06400 2.42293 2.45416 3.02087 3.14130 3.15046 3.45669 3.75655 3.76540 3.94365 3.99747 4.06720 4.10099 4.24693 4.27488 4.41558 4.55913 4.64682 4.66379 4.79720 4.85645 4.86994 5.04593 5.14065 5.15819 5.19998 5.22966 5.33392 5.39092 5.58100 5.79463 5.80450 5.89765 6.26576 6.61814 6.89371 7.40071 8.93888 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.033224 B = 0.001735 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.556401 B =16137.672559 C =16701.432939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.097 4.097 11 C -0.101 4.101 12 C -0.102 4.102 13 C 0.466 3.534 14 O -0.533 6.533 15 O -0.334 6.334 16 C 0.099 3.901 17 H 0.108 0.892 18 C 0.039 3.961 19 O -0.301 6.301 20 C 0.114 3.886 21 C -0.138 4.138 22 C 0.003 3.997 23 Cl -0.049 7.049 24 C -0.133 4.133 25 C -0.038 4.038 26 C -0.185 4.185 27 H 0.262 0.738 28 H -0.013 1.013 29 H -0.013 1.013 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.247 -30.431 -1.874 32.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.139 4.139 13 C 0.311 3.689 14 O -0.422 6.422 15 O -0.251 6.251 16 C 0.044 3.956 17 H 0.126 0.874 18 C -0.036 4.036 19 O -0.215 6.215 20 C 0.068 3.932 21 C -0.157 4.157 22 C -0.024 4.024 23 Cl -0.020 7.020 24 C -0.151 4.151 25 C -0.057 4.057 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.686 -30.638 -1.739 32.180 hybrid contribution -0.459 1.010 0.045 1.110 sum 9.227 -29.629 -1.694 31.078 Atomic orbital electron populations 1.70127 1.07960 1.27618 1.52016 1.26053 0.95765 1.03611 0.94903 0.85371 0.79239 0.78646 0.77608 1.18153 1.20584 1.20599 1.21798 0.93787 0.92273 1.49979 0.91588 1.19069 0.94723 0.93633 0.94570 1.21439 0.97888 0.92415 1.01683 1.21364 0.97438 0.93111 1.01943 1.21531 0.98870 0.85196 1.08287 1.24455 0.87239 0.86457 0.70747 1.90687 1.17062 1.87973 1.46496 1.86678 1.40607 1.13977 1.83872 1.22715 0.94665 0.81058 0.97147 0.87435 1.24421 1.06141 0.77242 0.95821 1.86887 1.61578 1.24265 1.48818 1.19342 0.91380 0.94800 0.87651 1.20129 0.99247 0.97049 0.99252 1.20603 0.97137 0.88883 0.95778 1.98399 1.78665 1.30708 1.94262 1.21272 1.02222 0.90644 1.01009 1.20543 0.92553 0.98193 0.94362 1.20620 1.04670 0.94422 0.98869 0.92911 0.99455 0.99427 0.91833 0.91832 0.93014 0.92931 0.85060 0.85042 0.87976 0.85198 0.82981 0.81669 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.90 4.97 29.84 0.15 1.05 16 10 C -0.10 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.10 -3.20 4.50 30.59 0.14 -3.07 16 12 C -0.10 -2.20 5.81 29.85 0.17 -2.02 16 13 C 0.47 11.18 7.96 71.24 0.57 11.74 16 14 O -0.53 -16.43 15.28 21.99 0.34 -16.09 16 15 O -0.33 -6.86 10.00 -51.40 -0.51 -7.38 16 16 C 0.10 1.94 3.39 30.73 0.10 2.04 16 17 H 0.11 2.27 7.32 -2.39 -0.02 2.26 16 18 C 0.04 0.67 7.77 72.56 0.56 1.23 16 19 O -0.30 -5.98 11.10 -95.06 -1.06 -7.03 16 20 C 0.11 2.13 7.04 22.68 0.16 2.29 16 21 C -0.14 -2.17 9.84 22.47 0.22 -1.94 16 22 C 0.00 0.04 6.31 22.26 0.14 0.18 16 23 Cl -0.05 -0.62 28.94 -2.72 -0.08 -0.69 16 24 C -0.13 -1.63 9.84 22.33 0.22 -1.41 16 25 C -0.04 -0.55 10.03 22.17 0.22 -0.33 16 26 C -0.18 -3.34 5.99 -19.52 -0.12 -3.46 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 1.57 8.12 -2.38 -0.02 1.55 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -69.79 361.48 5.44 -64.35 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.05 Total: 5.52 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 3.39 Total: -27.30 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -1.23 Total: -30.50 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.69 kcal Total: -69.79 5.44 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805931256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.530 kcal (2) G-P(sol) polarization free energy of solvation -69.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds