Wall clock time and date at job start Tue Mar 31 2020 14:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48493 * 109.47297 * 270.00596 * 3 2 1 5 5 H 1.48509 * 109.46616 * 30.00262 * 3 2 1 6 6 H 1.48501 * 109.47199 * 149.99661 * 3 2 1 7 7 C 1.37881 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00336 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47160 * 300.00198 * 9 7 2 11 11 O 1.42907 * 109.46833 * 59.99769 * 9 7 2 12 12 C 1.52998 * 109.47434 * 179.97438 * 9 7 2 13 13 S 1.81004 * 109.47223 * 180.02562 * 12 9 7 14 14 C 1.76202 * 99.99782 * 180.02562 * 13 12 9 15 15 N 1.31410 * 126.38354 * 359.97339 * 14 13 12 16 16 N 1.28514 * 110.08583 * 180.02562 * 15 14 13 17 17 C 1.31276 * 109.96237 * 0.02562 * 16 15 14 18 18 C 1.47817 * 126.46487 * 179.97438 * 17 16 15 19 19 C 1.39572 * 120.15282 * 180.02562 * 18 17 16 20 20 C 1.37947 * 119.87289 * 179.97438 * 19 18 17 21 21 C 1.38386 * 120.19710 * 359.97438 * 20 19 18 22 22 C 1.38299 * 120.32290 * 359.75377 * 21 20 19 23 23 C 1.38226 * 120.11039 * 0.50294 * 22 21 20 24 24 F 1.35104 * 120.09442 * 179.76900 * 23 22 21 25 25 N 1.36603 * 126.38100 * 180.31162 * 14 13 12 26 26 N 1.36605 * 127.17292 * 0.02562 * 25 14 13 27 27 H 0.96990 * 120.00328 * 359.97438 * 1 2 3 28 28 H 0.96705 * 113.99772 * 60.00433 * 11 9 7 29 29 H 1.09000 * 109.46909 * 60.00351 * 12 9 7 30 30 H 1.09003 * 109.47159 * 300.00260 * 12 9 7 31 31 H 1.07994 * 120.06460 * 359.97438 * 19 18 17 32 32 H 1.07996 * 119.89632 * 179.97438 * 20 19 18 33 33 H 1.08007 * 119.83941 * 179.97438 * 21 20 19 34 34 H 1.07994 * 119.94645 * 180.27375 * 22 21 20 35 35 H 1.00902 * 110.99549 * 270.13331 * 26 25 14 36 36 H 1.00895 * 111.00465 * 34.08919 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6248 -2.5572 0.8897 11 8 0.4291 -2.5746 -1.1671 12 6 2.2454 -3.6621 -0.0018 13 16 1.3404 -5.2296 -0.0026 14 6 2.6903 -6.3622 -0.0032 15 7 3.9674 -6.0527 -0.0036 16 7 4.6806 -7.1218 -0.0046 17 6 3.9028 -8.1794 -0.0054 18 6 4.3400 -9.5914 -0.0072 19 6 3.3945 -10.6181 -0.0084 20 6 3.8090 -11.9338 -0.0106 21 6 5.1589 -12.2384 -0.0121 22 6 6.1027 -11.2275 -0.0165 23 6 5.7020 -9.9046 -0.0090 24 9 6.6244 -8.9174 -0.0086 25 7 2.6042 -7.7255 -0.0099 26 7 1.4658 -8.4806 -0.0179 27 1 -0.4850 0.8399 0.0004 28 1 0.9210 -2.5291 -1.9984 29 1 2.8727 -3.6047 0.8877 30 1 2.8714 -3.6039 -0.8923 31 1 2.3405 -10.3829 -0.0077 32 1 3.0777 -12.7285 -0.0112 33 1 5.4769 -13.2705 -0.0133 34 1 7.1546 -11.4721 -0.0221 35 1 1.1597 -8.6829 0.9221 36 1 0.7353 -8.0280 -0.5465 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806584426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:45 Heat of formation + Delta-G solvation = 13.466293 kcal Electronic energy + Delta-G solvation = -23762.074384 eV Core-core repulsion = 19902.464293 eV Total energy + Delta-G solvation = -3859.610091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.86472 -44.09828 -39.80057 -38.00843 -37.63990 -34.32739 -33.75323 -31.80449 -31.57152 -30.91613 -30.28419 -27.44854 -25.07260 -24.55317 -23.37521 -22.90548 -22.20986 -19.94526 -19.29322 -18.67529 -18.50391 -17.91141 -17.42915 -16.88655 -16.73378 -16.67348 -16.35274 -16.26637 -15.99472 -15.56764 -15.38638 -14.81610 -14.33976 -14.12188 -13.62152 -13.42219 -13.38156 -13.24276 -12.96581 -12.80507 -12.75165 -12.65162 -12.20279 -12.05075 -11.94523 -11.69272 -11.60602 -11.19651 -10.81347 -10.76345 -10.38975 -9.96335 -9.69348 -8.71807 -8.20669 -6.46748 -0.46402 -0.18427 0.21954 0.65275 0.94907 1.00352 1.40392 1.41806 1.52462 1.54962 2.37292 2.66843 2.76429 3.06164 3.22365 3.42294 3.64307 3.90726 4.00278 4.06938 4.15955 4.17316 4.21577 4.33131 4.47057 4.58955 4.83579 4.86594 5.10928 5.13670 5.32346 5.40345 5.44992 5.48071 5.62038 5.87073 5.92669 6.18293 6.61509 7.24471 7.26719 7.40349 8.83787 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.002601 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.053949 B =10763.517057 C =11621.685042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.033 3.967 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.585 4.585 8 H 0.060 0.940 9 C 0.249 3.751 10 H 0.041 0.959 11 O -0.569 6.569 12 C -0.103 4.103 13 S 0.035 5.965 14 C 0.125 3.875 15 N -0.318 5.318 16 N -0.302 5.302 17 C 0.246 3.754 18 C -0.082 4.082 19 C -0.067 4.067 20 C -0.124 4.124 21 C -0.062 4.062 22 C -0.159 4.159 23 C 0.106 3.894 24 F -0.142 7.142 25 N -0.302 5.302 26 N -0.567 5.567 27 H 0.265 0.735 28 H 0.361 0.639 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.382 0.618 36 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -28.800 0.301 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.624 4.624 8 H 0.078 0.922 9 C 0.189 3.811 10 H 0.059 0.941 11 O -0.374 6.374 12 C -0.253 4.253 13 S 0.265 5.735 14 C -0.251 4.251 15 N -0.164 5.164 16 N -0.143 5.143 17 C -0.021 4.021 18 C -0.086 4.086 19 C -0.087 4.087 20 C -0.142 4.142 21 C -0.080 4.080 22 C -0.178 4.178 23 C 0.085 3.915 24 F -0.120 7.120 25 N -0.083 5.083 26 N -0.202 5.202 27 H 0.074 0.926 28 H 0.207 0.793 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.202 0.798 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.748 -28.570 0.403 28.817 hybrid contribution 0.759 2.050 0.139 2.191 sum 4.506 -26.519 0.542 26.905 Atomic orbital electron populations 1.70172 1.07416 1.27769 1.47560 1.25824 0.95549 1.02671 0.93051 0.85534 0.78641 0.78727 0.78560 1.19698 1.20502 1.19309 1.21828 0.93570 0.91731 1.55272 0.92214 1.18977 0.87233 0.88794 0.86077 0.94108 1.86519 1.38767 1.96112 1.15978 1.24496 1.02113 0.92736 1.05931 1.85397 0.99874 0.96424 1.91855 1.28006 1.01227 0.87830 1.08049 1.74710 0.99393 1.20909 1.21340 1.74465 1.25623 0.94547 1.19632 1.23072 0.78638 0.96128 1.04227 1.17753 0.93122 0.86721 1.11024 1.21843 1.00500 0.91557 0.94803 1.21630 0.97174 0.95916 0.99489 1.21716 0.92153 1.00554 0.93603 1.21435 1.03240 0.89127 1.03968 1.18156 0.84672 0.86582 1.02110 1.91545 1.65183 1.61856 1.93427 1.45120 1.05214 1.01736 1.56226 1.59955 1.00470 1.36722 1.23053 0.92598 0.79335 0.89645 0.89743 0.81650 0.80979 0.80648 0.82300 0.79795 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.68 12.84 21.45 0.28 -51.40 16 2 C 0.03 1.80 5.40 84.66 0.46 2.26 16 3 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.58 -31.63 8.76 25.60 0.22 -31.41 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.25 12.33 2.87 29.85 0.09 12.41 16 10 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 11 O -0.57 -27.98 12.32 -148.98 -1.84 -29.82 16 12 C -0.10 -4.32 4.86 71.98 0.35 -3.97 16 13 S 0.04 1.19 21.61 -56.49 -1.22 -0.03 16 14 C 0.12 4.32 8.13 179.49 1.46 5.78 16 15 N -0.32 -13.18 11.59 -56.74 -0.66 -13.83 16 16 N -0.30 -12.01 10.89 -50.81 -0.55 -12.57 16 17 C 0.25 7.82 7.85 136.20 1.07 8.89 16 18 C -0.08 -2.00 5.88 -20.05 -0.12 -2.12 16 19 C -0.07 -1.02 9.56 22.52 0.22 -0.80 16 20 C -0.12 -1.07 10.03 22.24 0.22 -0.85 16 21 C -0.06 -0.51 10.04 22.32 0.22 -0.28 16 22 C -0.16 -2.32 10.01 22.28 0.22 -2.09 16 23 C 0.11 2.55 7.28 22.63 0.16 2.72 16 24 F -0.14 -4.40 15.82 44.97 0.71 -3.69 16 25 N -0.30 -8.34 3.83 -186.74 -0.72 -9.05 16 26 N -0.57 -9.15 7.79 37.02 0.29 -8.86 16 27 H 0.26 14.48 8.31 -92.72 -0.77 13.71 16 28 H 0.36 15.81 9.04 -74.05 -0.67 15.14 16 29 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.17 2.02 5.55 -2.91 -0.02 2.00 16 32 H 0.17 0.24 8.06 -2.91 -0.02 0.21 16 33 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.38 4.12 9.21 -210.55 -1.94 2.19 16 36 H 0.39 5.46 8.80 -210.56 -1.85 3.61 16 Total: -1.00 -75.88 335.48 -0.38 -76.26 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -3.28 Total: 17.42 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.58 Total: -9.46 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -1.36 Total: -95.71 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.84 Total: -29.82 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.71 Total: -3.69 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -1.22 Total: -0.03 kcal Total: -75.88 -0.38 -76.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806584426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.722 kcal (2) G-P(sol) polarization free energy of solvation -75.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds