Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21254 * 120.00263 * 2 1 4 4 C 1.47178 * 119.99920 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.14949 * 359.97438 * 4 2 1 6 6 C 1.37892 * 119.94088 * 180.02562 * 5 4 2 7 7 C 1.38332 * 120.23599 * 359.75141 * 6 5 4 8 8 C 1.38858 * 120.29196 * 0.51202 * 7 6 5 9 9 O 1.35907 * 119.96984 * 179.76697 * 8 7 6 10 10 S 1.52206 * 113.99630 * 269.72034 * 9 8 7 11 11 O 1.42104 * 104.27763 * 318.92588 * 10 9 8 12 12 O 1.42102 * 104.27526 * 191.07180 * 10 9 8 13 13 C 1.81402 * 104.44949 * 75.00143 * 10 9 8 14 14 C 1.53003 * 109.46891 * 184.32999 * 13 10 9 15 15 C 1.50702 * 115.55005 * 299.67112 * 14 13 10 16 16 H 1.08000 * 119.99700 * 95.16806 * 15 14 13 17 17 C 1.37874 * 119.99866 * 275.16086 * 15 14 13 18 18 N 1.31511 * 120.00163 * 7.39694 * 17 15 14 19 19 Si 1.86798 * 119.99863 * 187.38717 * 17 15 14 20 20 H 1.48499 * 109.47469 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47581 * 300.00578 * 19 17 15 22 22 H 1.48505 * 109.47146 * 60.00477 * 19 17 15 23 23 C 1.53003 * 117.49805 * 85.34099 * 14 13 10 24 24 C 1.52998 * 117.49790 * 154.00224 * 14 13 10 25 25 C 1.38427 * 120.05509 * 359.48372 * 8 7 6 26 26 H 1.09008 * 109.47110 * 240.00489 * 1 2 3 27 27 H 1.08996 * 109.47190 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47109 * 120.00675 * 1 2 3 29 29 H 1.08001 * 120.02589 * 0.02562 * 5 4 2 30 30 H 1.08006 * 119.88224 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.85293 * 180.27274 * 7 6 5 32 32 H 1.08997 * 109.47147 * 64.32821 * 13 10 9 33 33 H 1.08996 * 109.46836 * 304.32960 * 13 10 9 34 34 H 0.96997 * 120.00008 * 355.48944 * 18 17 15 35 35 H 1.08996 * 117.50019 * 215.00123 * 23 14 13 36 36 H 1.08997 * 117.49868 * 0.02723 * 23 14 13 37 37 H 1.09006 * 117.49869 * 359.97438 * 24 14 13 38 38 H 1.08999 * 117.50093 * 144.96937 * 24 14 13 39 39 H 1.08005 * 120.11104 * 180.23545 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6237 -3.6801 -0.0025 8 6 4.3248 -2.4815 0.0019 9 8 5.6838 -2.4899 0.0016 10 16 6.3031 -2.4922 1.3919 11 8 5.5030 -1.5816 2.1335 12 8 7.6819 -2.2364 1.1618 13 6 6.0617 -4.1869 1.9922 14 6 6.5516 -4.2904 3.4380 15 6 8.0090 -3.9740 3.6546 16 1 8.3073 -2.9794 3.9517 17 6 8.9616 -4.9543 3.4737 18 7 8.6177 -6.1209 2.9734 19 14 10.7405 -4.6252 3.9389 20 1 11.5592 -5.8295 3.6482 21 1 11.2539 -3.4761 3.1507 22 1 10.8228 -4.3080 5.3873 23 6 5.5715 -3.8991 4.5458 24 6 5.9247 -5.3715 4.3206 25 6 3.6405 -1.2782 0.0008 26 1 -0.3634 -0.5138 0.8901 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.4666 -2.4911 0.0017 30 1 1.7019 -4.6157 0.0031 31 1 4.1608 -4.6171 -0.0061 32 1 6.6267 -4.8779 1.3667 33 1 5.0025 -4.4403 1.9485 34 1 7.6848 -6.3152 2.7928 35 1 5.9808 -3.4129 5.4313 36 1 4.5775 -3.5684 4.2447 37 1 5.1628 -6.0087 3.8714 38 1 6.5664 -5.8542 5.0577 39 1 4.1849 -0.3453 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809387058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = -93.823539 kcal Electronic energy + Delta-G solvation = -25755.973479 eV Core-core repulsion = 21950.585754 eV Total energy + Delta-G solvation = -3805.387724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13096 -39.66829 -37.74156 -37.15153 -36.52532 -35.40679 -32.18393 -32.03318 -31.12840 -29.51005 -28.50393 -25.08126 -24.31640 -23.45698 -21.48182 -21.36936 -19.95811 -19.43639 -17.97972 -17.43527 -17.28123 -16.70274 -16.53704 -15.86548 -15.58721 -15.28122 -14.74413 -14.59759 -14.14929 -14.07634 -13.74275 -13.38618 -13.14082 -12.99349 -12.75877 -12.62592 -12.49935 -12.26960 -11.99146 -11.95588 -11.54766 -11.48462 -11.41628 -11.23322 -10.79182 -10.73510 -10.44428 -10.10026 -10.09426 -9.77099 -9.42515 -9.19732 -8.73046 -8.54238 -8.40594 -6.50697 -4.29989 0.14348 0.53652 1.10924 2.03562 2.57945 3.30896 3.43902 3.49086 3.65285 3.66320 4.21236 4.36662 4.45749 4.47070 4.57280 4.60888 4.72807 4.81414 4.88902 4.99702 5.02986 5.07803 5.15679 5.37370 5.41706 5.56563 5.59236 5.79673 5.84444 5.87973 5.94153 5.99927 6.08824 6.23903 6.46668 6.49464 6.67168 6.92939 7.10906 7.20378 7.96608 8.29201 8.71938 9.49361 10.89319 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.003891 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.948424 B = 7193.615368 C = 7525.916916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.448 6.448 4 C -0.159 4.159 5 C -0.065 4.065 6 C -0.113 4.113 7 C -0.102 4.102 8 C 0.072 3.928 9 O -0.678 6.678 10 S 2.593 3.407 11 O -0.963 6.963 12 O -0.908 6.908 13 C -0.588 4.588 14 C 0.023 3.977 15 C -0.595 4.595 16 H 0.064 0.936 17 C 0.041 3.959 18 N -0.895 5.895 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.285 1.285 23 C -0.189 4.189 24 C -0.162 4.162 25 C -0.038 4.038 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.274 0.726 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.533 3.143 -7.102 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.272 3.728 3 O -0.323 6.323 4 C -0.160 4.160 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.122 4.122 8 C 0.030 3.970 9 O -0.636 6.636 10 S 2.692 3.308 11 O -0.961 6.961 12 O -0.906 6.906 13 C -0.718 4.718 14 C 0.021 3.979 15 C -0.631 4.631 16 H 0.082 0.918 17 C -0.166 4.166 18 N -0.528 5.528 19 Si 0.889 3.111 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.227 4.227 24 C -0.201 4.201 25 C -0.058 4.058 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.161 0.839 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.340 3.747 -7.370 18.313 hybrid contribution -1.490 -0.282 0.147 1.524 sum -17.830 3.465 -7.223 19.547 Atomic orbital electron populations 1.22243 0.93085 1.05472 1.04690 1.22472 0.91813 0.87221 0.71282 1.90581 1.72151 1.34092 1.35476 1.20413 0.93223 0.95654 1.06689 1.21588 1.00657 0.91134 0.95026 1.21023 0.92714 0.98995 1.00401 1.21755 0.95566 0.97442 0.97452 1.17931 0.77744 0.94415 1.06887 1.85873 1.25258 1.92616 1.59881 1.05512 0.74705 0.78282 0.72294 1.93561 1.69917 1.61159 1.71478 1.93608 1.31280 1.84173 1.81546 1.30386 1.07431 1.23093 1.10939 1.18498 0.94411 1.01903 0.83127 1.21402 0.88365 0.99915 1.53466 0.91828 1.25841 1.05490 0.93019 0.92295 1.70784 1.20929 1.23722 1.37407 0.83640 0.74506 0.76309 0.76616 1.20583 1.20542 1.21078 1.23062 0.98855 0.98469 1.02293 1.22792 1.02292 0.90730 1.04257 1.21581 0.93865 0.98098 0.92283 0.88519 0.89445 0.88653 0.83915 0.83670 0.83474 0.85039 0.87914 0.91478 0.89121 0.90623 0.91174 0.89164 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 8.93 36.01 0.32 -0.80 16 2 C 0.39 4.26 7.23 -30.68 -0.22 4.04 16 3 O -0.45 -6.66 17.08 5.58 0.10 -6.57 16 4 C -0.16 -1.82 5.87 -105.08 -0.62 -2.44 16 5 C -0.07 -0.52 9.47 -39.10 -0.37 -0.89 16 6 C -0.11 -0.97 10.02 -39.67 -0.40 -1.37 16 7 C -0.10 -1.22 8.42 -39.32 -0.33 -1.55 16 8 C 0.07 1.12 4.79 -39.28 -0.19 0.94 16 9 O -0.68 -12.53 10.05 -51.77 -0.52 -13.05 16 10 S 2.59 56.10 4.84 -107.50 -0.52 55.58 16 11 O -0.96 -21.45 16.26 -67.04 -1.09 -22.54 16 12 O -0.91 -23.37 17.49 -67.04 -1.17 -24.54 16 13 C -0.59 -12.12 5.40 37.16 0.20 -11.92 16 14 C 0.02 0.54 0.95 -155.66 -0.15 0.39 16 15 C -0.59 -16.39 7.80 -34.44 -0.27 -16.66 16 16 H 0.06 1.81 7.82 -52.49 -0.41 1.40 16 17 C 0.04 1.14 5.38 -17.82 -0.10 1.05 16 18 N -0.90 -25.49 13.57 55.43 0.75 -24.74 16 19 Si 1.06 25.26 29.91 -169.99 -5.08 20.18 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 C -0.19 -4.02 9.95 -26.69 -0.27 -4.29 16 24 C -0.16 -3.49 8.76 -26.69 -0.23 -3.72 16 25 C -0.04 -0.58 8.59 -38.94 -0.33 -0.91 16 26 H 0.10 0.38 8.09 -51.92 -0.42 -0.04 16 27 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.09 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.14 0.55 7.05 -52.49 -0.37 0.18 16 30 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.15 1.51 7.42 -52.49 -0.39 1.12 16 32 H 0.13 2.75 7.77 -51.93 -0.40 2.35 16 33 H 0.10 1.69 6.29 -51.93 -0.33 1.36 16 34 H 0.27 7.53 6.16 -40.82 -0.25 7.28 16 35 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.15 2.39 7.65 -52.48 -0.40 1.99 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -35.97 347.14 -9.98 -45.95 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.72 Total: 2.63 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: -2.95 Total: -38.13 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.75 Total: -24.74 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -2.69 Total: -66.70 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 16 Polarization: 56.10 SS G_CDS: -0.52 Total: 55.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.97 -9.98 -45.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809387058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.876 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds