Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21254 * 120.00263 * 2 1 4 4 C 1.47178 * 119.99920 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.14949 * 359.97438 * 4 2 1 6 6 C 1.37892 * 119.94088 * 180.02562 * 5 4 2 7 7 C 1.38332 * 120.23599 * 359.75141 * 6 5 4 8 8 C 1.38858 * 120.29196 * 0.51202 * 7 6 5 9 9 O 1.35907 * 119.96984 * 179.76697 * 8 7 6 10 10 S 1.52206 * 113.99630 * 269.72034 * 9 8 7 11 11 O 1.42104 * 104.27763 * 318.92588 * 10 9 8 12 12 O 1.42102 * 104.27526 * 191.07180 * 10 9 8 13 13 C 1.81402 * 104.44949 * 75.00143 * 10 9 8 14 14 C 1.53003 * 109.46891 * 184.32999 * 13 10 9 15 15 C 1.50702 * 115.55005 * 299.67112 * 14 13 10 16 16 H 1.08000 * 119.99700 * 95.16806 * 15 14 13 17 17 C 1.37874 * 119.99866 * 275.16086 * 15 14 13 18 18 N 1.31511 * 120.00163 * 7.39694 * 17 15 14 19 19 Si 1.86798 * 119.99863 * 187.38717 * 17 15 14 20 20 H 1.48499 * 109.47469 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47581 * 300.00578 * 19 17 15 22 22 H 1.48505 * 109.47146 * 60.00477 * 19 17 15 23 23 C 1.53003 * 117.49805 * 85.34099 * 14 13 10 24 24 C 1.52998 * 117.49790 * 154.00224 * 14 13 10 25 25 C 1.38427 * 120.05509 * 359.48372 * 8 7 6 26 26 H 1.09008 * 109.47110 * 240.00489 * 1 2 3 27 27 H 1.08996 * 109.47190 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47109 * 120.00675 * 1 2 3 29 29 H 1.08001 * 120.02589 * 0.02562 * 5 4 2 30 30 H 1.08006 * 119.88224 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.85293 * 180.27274 * 7 6 5 32 32 H 1.08997 * 109.47147 * 64.32821 * 13 10 9 33 33 H 1.08996 * 109.46836 * 304.32960 * 13 10 9 34 34 H 0.96997 * 120.00008 * 355.48944 * 18 17 15 35 35 H 1.08996 * 117.50019 * 215.00123 * 23 14 13 36 36 H 1.08997 * 117.49868 * 0.02723 * 23 14 13 37 37 H 1.09006 * 117.49869 * 359.97438 * 24 14 13 38 38 H 1.08999 * 117.50093 * 144.96937 * 24 14 13 39 39 H 1.08005 * 120.11104 * 180.23545 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6237 -3.6801 -0.0025 8 6 4.3248 -2.4815 0.0019 9 8 5.6838 -2.4899 0.0016 10 16 6.3031 -2.4922 1.3919 11 8 5.5030 -1.5816 2.1335 12 8 7.6819 -2.2364 1.1618 13 6 6.0617 -4.1869 1.9922 14 6 6.5516 -4.2904 3.4380 15 6 8.0090 -3.9740 3.6546 16 1 8.3073 -2.9794 3.9517 17 6 8.9616 -4.9543 3.4737 18 7 8.6177 -6.1209 2.9734 19 14 10.7405 -4.6252 3.9389 20 1 11.5592 -5.8295 3.6482 21 1 11.2539 -3.4761 3.1507 22 1 10.8228 -4.3080 5.3873 23 6 5.5715 -3.8991 4.5458 24 6 5.9247 -5.3715 4.3206 25 6 3.6405 -1.2782 0.0008 26 1 -0.3634 -0.5138 0.8901 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.4666 -2.4911 0.0017 30 1 1.7019 -4.6157 0.0031 31 1 4.1608 -4.6171 -0.0061 32 1 6.6267 -4.8779 1.3667 33 1 5.0025 -4.4403 1.9485 34 1 7.6848 -6.3152 2.7928 35 1 5.9808 -3.4129 5.4313 36 1 4.5775 -3.5684 4.2447 37 1 5.1628 -6.0087 3.8714 38 1 6.5664 -5.8542 5.0577 39 1 4.1849 -0.3453 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809387058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = -118.779128 kcal Electronic energy + Delta-G solvation = -25757.055634 eV Core-core repulsion = 21950.585754 eV Total energy + Delta-G solvation = -3806.469880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.28803 -40.65122 -39.00080 -38.65769 -38.27899 -37.18128 -34.09185 -33.01124 -31.99761 -30.38979 -29.95429 -27.12810 -25.19854 -24.49547 -23.17571 -22.53956 -21.59511 -20.71741 -19.30619 -19.04385 -18.75355 -18.12872 -17.66356 -16.93008 -16.77235 -16.20669 -16.08498 -15.87505 -15.67571 -15.57001 -15.10484 -14.93102 -14.66469 -14.25373 -14.13568 -13.80656 -13.43300 -13.29940 -13.23777 -13.18302 -13.16651 -12.97367 -12.92778 -12.70842 -12.46187 -12.42027 -12.15749 -11.96445 -11.55199 -10.92963 -10.63913 -10.57813 -10.32289 -10.29324 -10.06872 -8.65763 -6.43833 -1.06404 -0.57147 0.04675 1.12920 1.25046 1.49856 1.56992 1.76123 2.47275 2.51199 2.58365 2.85415 2.98069 3.09244 3.15283 3.51835 3.64522 3.73233 3.77745 3.89725 4.01629 4.13113 4.16866 4.27628 4.35918 4.48960 4.52593 4.70878 4.74187 4.81312 4.87117 4.94139 4.97118 5.05811 5.07234 5.19004 5.29969 5.41315 5.62809 5.96812 6.11997 6.44547 6.62096 7.38170 8.77151 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.003891 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.948424 B = 7193.615368 C = 7525.916916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.391 3.609 3 O -0.508 6.508 4 C -0.173 4.173 5 C -0.032 4.032 6 C -0.097 4.097 7 C -0.107 4.107 8 C 0.021 3.979 9 O -0.679 6.679 10 S 2.599 3.401 11 O -0.981 6.981 12 O -0.970 6.970 13 C -0.572 4.572 14 C -0.018 4.018 15 C -0.610 4.610 16 H 0.037 0.963 17 C 0.000 4.000 18 N -0.914 5.914 19 Si 1.090 2.910 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.178 4.178 24 C -0.146 4.146 25 C -0.072 4.072 26 H 0.127 0.873 27 H 0.083 0.917 28 H 0.131 0.869 29 H 0.203 0.797 30 H 0.198 0.802 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.295 0.804 -7.274 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.273 3.727 3 O -0.387 6.387 4 C -0.174 4.174 5 C -0.050 4.050 6 C -0.114 4.114 7 C -0.127 4.127 8 C -0.021 4.021 9 O -0.638 6.638 10 S 2.701 3.299 11 O -0.979 6.979 12 O -0.968 6.968 13 C -0.704 4.704 14 C -0.020 4.020 15 C -0.647 4.647 16 H 0.056 0.944 17 C -0.203 4.203 18 N -0.548 5.548 19 Si 0.913 3.087 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.216 4.216 24 C -0.185 4.185 25 C -0.093 4.093 26 H 0.145 0.855 27 H 0.102 0.898 28 H 0.149 0.851 29 H 0.220 0.780 30 H 0.215 0.785 31 H 0.181 0.819 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.104 1.411 -7.527 22.451 hybrid contribution -0.241 0.470 0.127 0.543 sum -21.346 1.881 -7.399 22.670 Atomic orbital electron populations 1.22323 0.88131 1.06476 1.07593 1.23394 0.94311 0.86021 0.69013 1.90573 1.73745 1.35876 1.38477 1.20787 0.91720 0.97994 1.06876 1.22281 1.03307 0.89031 0.90394 1.21709 0.91079 1.01300 0.97345 1.22155 0.97386 0.96284 0.96853 1.18501 0.76173 0.96334 1.11049 1.85817 1.27766 1.92703 1.57546 1.05159 0.73468 0.78779 0.72480 1.93511 1.69685 1.62251 1.72466 1.93520 1.34950 1.85402 1.82959 1.30131 1.10225 1.21459 1.08550 1.18586 0.93275 1.04882 0.85279 1.21606 0.91193 0.98716 1.53189 0.94420 1.26806 1.08338 0.92976 0.92182 1.70845 1.21054 1.24102 1.38849 0.83300 0.71756 0.76219 0.77474 1.19721 1.21113 1.19048 1.23131 0.99360 0.98322 1.00741 1.22780 1.02085 0.90968 1.02701 1.21596 0.96027 0.96888 0.94773 0.85510 0.89758 0.85073 0.78040 0.78461 0.81887 0.85608 0.83171 0.91576 0.90010 0.87648 0.87647 0.91162 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 8.93 71.24 0.64 -0.64 16 2 C 0.39 7.88 7.23 28.04 0.20 8.08 16 3 O -0.51 -15.84 17.08 -2.95 -0.05 -15.89 16 4 C -0.17 -3.61 5.87 -20.16 -0.12 -3.72 16 5 C -0.03 -0.32 9.47 22.58 0.21 -0.10 16 6 C -0.10 -1.04 10.02 22.21 0.22 -0.81 16 7 C -0.11 -2.19 8.42 22.44 0.19 -2.00 16 8 C 0.02 0.64 4.79 22.46 0.11 0.75 16 9 O -0.68 -26.41 10.05 -61.60 -0.62 -27.03 16 10 S 2.60 117.44 4.84 -56.49 -0.27 117.17 16 11 O -0.98 -45.68 16.26 -118.57 -1.93 -47.61 16 12 O -0.97 -53.62 17.49 -118.57 -2.07 -55.70 16 13 C -0.57 -23.17 5.40 71.98 0.39 -22.78 16 14 C -0.02 -0.86 0.95 -52.93 -0.05 -0.91 16 15 C -0.61 -34.58 7.80 25.60 0.20 -34.38 16 16 H 0.04 2.26 7.82 -2.91 -0.02 2.23 16 17 C 0.00 0.01 5.38 84.65 0.46 0.47 16 18 N -0.91 -52.40 13.57 21.45 0.29 -52.11 16 19 Si 1.09 51.95 29.91 68.60 2.05 54.00 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.18 -7.28 9.95 30.62 0.30 -6.97 16 24 C -0.15 -6.02 8.76 30.62 0.27 -5.75 16 25 C -0.07 -2.25 8.59 22.68 0.19 -2.06 16 26 H 0.13 0.17 8.09 -2.38 -0.02 0.16 16 27 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 28 H 0.13 0.01 8.09 -2.39 -0.02 -0.01 16 29 H 0.20 -0.33 7.05 -2.91 -0.02 -0.35 16 30 H 0.20 0.20 8.06 -2.91 -0.02 0.17 16 31 H 0.16 2.72 7.42 -2.91 -0.02 2.70 16 32 H 0.13 5.26 7.77 -2.39 -0.02 5.24 16 33 H 0.15 4.46 6.29 -2.39 -0.02 4.45 16 34 H 0.27 15.00 6.16 -92.71 -0.57 14.43 16 35 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 37 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 38 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.11 4.17 7.65 -2.91 -0.02 4.15 16 Total: -1.00 -88.11 347.14 1.88 -86.22 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.27 Total: 11.79 kcal Atomic # 6 Polarization: -74.06 SS G_CDS: 3.22 Total: -70.85 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.29 Total: -52.11 kcal Atomic # 8 Polarization: -141.56 SS G_CDS: -4.67 Total: -146.23 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.05 Total: 54.00 kcal Atomic # 16 Polarization: 117.44 SS G_CDS: -0.27 Total: 117.17 kcal Total: -88.11 1.88 -86.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809387058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.558 kcal (2) G-P(sol) polarization free energy of solvation -88.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds