Wall clock time and date at job start Tue Mar 31 2020 13:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47167 * 240.00128 * 3 2 1 5 5 H 1.48503 * 109.46708 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46854 * 119.99913 * 3 2 1 7 7 C 1.37877 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 C 1.38260 * 120.00125 * 359.72385 * 15 14 13 17 17 C 1.38209 * 120.00080 * 179.80764 * 16 15 14 18 18 C 1.38257 * 119.99683 * 0.40472 * 17 16 15 19 19 N 1.48028 * 119.99758 * 179.83321 * 18 17 16 20 20 O 1.21798 * 119.99980 * 180.02562 * 19 18 17 21 21 O 1.21800 * 119.99588 * 0.02562 * 19 18 17 22 22 C 1.38207 * 120.00312 * 359.85110 * 18 17 16 23 23 C 1.38213 * 119.99713 * 179.97438 * 15 14 13 24 24 N 1.48019 * 120.00182 * 359.97438 * 23 15 14 25 25 O 1.21804 * 119.99458 * 179.97438 * 24 23 15 26 26 O 1.21800 * 120.00107 * 0.02562 * 24 23 15 27 27 H 0.96999 * 120.00252 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47089 * 59.99899 * 9 7 2 29 29 H 1.09003 * 109.47404 * 299.99828 * 9 7 2 30 30 H 1.09000 * 109.47151 * 59.99992 * 10 9 7 31 31 H 1.09003 * 109.47028 * 299.99448 * 10 9 7 32 32 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 33 33 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 34 34 H 1.08005 * 119.99445 * 0.02562 * 16 15 14 35 35 H 1.07996 * 120.00308 * 180.23030 * 17 16 15 36 36 H 1.07997 * 119.99959 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0015 13 8 2.1629 -6.1297 -0.0031 14 6 1.3721 -7.3474 -0.0031 15 6 2.2901 -8.5425 -0.0045 16 6 3.6608 -8.3614 -0.0113 17 6 4.5027 -9.4574 -0.0085 18 6 3.9742 -10.7350 -0.0074 19 7 4.8759 -11.9089 -0.0082 20 8 4.4104 -13.0344 -0.0077 21 8 6.0834 -11.7493 -0.0093 22 6 2.6040 -10.9161 -0.0060 23 6 1.7618 -9.8197 -0.0042 24 7 0.2943 -10.0136 -0.0020 25 8 -0.1711 -11.1392 -0.0022 26 8 -0.4476 -9.0477 -0.0009 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8877 31 1 2.8712 -3.6040 -0.8923 32 1 0.7436 -7.3725 0.8872 33 1 0.7428 -7.3720 -0.8928 34 1 4.0735 -7.3633 -0.0152 35 1 5.5733 -9.3160 -0.0101 36 1 2.1913 -11.9141 -0.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:27 Heat of formation + Delta-G solvation = -64.765382 kcal Electronic energy + Delta-G solvation = -26038.501748 eV Core-core repulsion = 21688.080866 eV Total energy + Delta-G solvation = -4350.420882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.09241 -42.67545 -40.70107 -39.97057 -37.29099 -37.20157 -36.58977 -33.85755 -33.70921 -32.91262 -31.31729 -29.14428 -27.48256 -26.39188 -25.34821 -23.84180 -22.78274 -22.14258 -20.73678 -20.11065 -19.51802 -19.00305 -18.39386 -18.31865 -18.09579 -17.65156 -17.35755 -16.68748 -16.47670 -16.02909 -15.49878 -14.89465 -14.73178 -14.55750 -13.83636 -13.45863 -13.12484 -12.81344 -12.64009 -12.35201 -12.20203 -12.02181 -11.90926 -11.73904 -11.65297 -11.53891 -11.34965 -11.16991 -11.02849 -10.76159 -10.74468 -10.29940 -10.18789 -10.18359 -9.73300 -9.31608 -8.47492 -6.11120 -4.17138 -1.18481 -0.86727 0.34524 0.35875 0.61694 0.80443 2.10229 2.36712 2.53245 3.25649 3.28159 3.31173 3.32192 3.43703 3.45703 3.60625 3.73514 4.33247 4.37550 4.46290 4.65632 4.77303 4.78278 4.90764 5.18524 5.24397 5.34659 5.61091 5.71301 5.90707 5.96337 6.31031 6.65875 6.94645 7.01240 7.53626 7.58782 7.85983 7.98585 8.22429 8.89435 9.47661 10.99663 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.002363 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.703831 B =11845.941046 C =13231.894170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.459 3.541 12 O -0.489 6.489 13 O -0.371 6.371 14 C 0.089 3.911 15 C 0.031 3.969 16 C -0.094 4.094 17 C -0.004 4.004 18 C -0.051 4.051 19 N 0.028 4.972 20 O -0.145 6.145 21 O -0.140 6.140 22 C 0.010 3.990 23 C -0.044 4.044 24 N 0.026 4.974 25 O -0.141 6.141 26 O -0.135 6.135 27 H 0.264 0.736 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.186 0.814 35 H 0.177 0.823 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -22.018 -0.026 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.138 4.138 11 C 0.302 3.698 12 O -0.374 6.374 13 O -0.290 6.290 14 C 0.016 3.984 15 C 0.029 3.971 16 C -0.113 4.113 17 C -0.023 4.023 18 C -0.135 4.135 19 N 0.551 4.449 20 O -0.362 6.362 21 O -0.358 6.358 22 C -0.010 4.010 23 C -0.128 4.128 24 N 0.547 4.453 25 O -0.358 6.358 26 O -0.352 6.352 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.203 0.797 35 H 0.194 0.806 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.013 -21.249 -0.026 23.081 hybrid contribution 0.129 0.359 0.003 0.381 sum 9.142 -20.890 -0.023 22.803 Atomic orbital electron populations 1.69970 1.06108 1.27058 1.49425 1.25019 0.94868 0.99385 0.94978 0.86593 0.79518 0.82839 0.78645 1.20139 1.21196 1.20146 1.21070 0.92993 0.90549 1.52452 0.92343 1.19042 0.93200 0.89166 0.99074 1.21837 1.00790 0.87003 1.04172 1.24929 0.88208 0.84826 0.71845 1.90706 1.15608 1.87112 1.43938 1.86471 1.42065 1.14710 1.85800 1.22091 0.90590 0.79455 1.06294 1.20170 0.96144 0.92416 0.88321 1.21349 0.90156 1.01209 0.98580 1.21607 1.03898 0.88826 0.87991 1.20850 0.89594 0.87193 1.15831 1.43324 1.01515 1.01941 0.98101 1.94609 1.80161 1.08595 1.52859 1.94593 0.96087 1.92471 1.52679 1.20590 0.90342 1.01290 0.88767 1.20543 0.81670 0.94234 1.16387 1.43323 1.02257 1.01105 0.98584 1.94597 1.78556 1.09949 1.52720 1.94657 1.56057 1.31976 1.52471 0.92653 0.95469 0.95463 0.88702 0.88710 0.86745 0.86750 0.79698 0.80612 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.79 4.26 -27.88 -0.12 0.67 16 10 C -0.10 -1.78 5.75 -27.88 -0.16 -1.94 16 11 C 0.46 7.63 7.96 36.01 0.29 7.92 16 12 O -0.49 -9.95 15.73 -18.75 -0.29 -10.24 16 13 O -0.37 -4.55 8.69 -39.26 -0.34 -4.89 16 14 C 0.09 0.96 4.10 36.01 0.15 1.11 16 15 C 0.03 0.25 5.88 -104.62 -0.62 -0.36 16 16 C -0.09 -0.55 9.38 -39.58 -0.37 -0.92 16 17 C 0.00 -0.02 9.56 -39.59 -0.38 -0.40 16 18 C -0.05 -0.36 6.85 -79.95 -0.55 -0.91 16 19 N 0.03 0.25 4.45 33.96 0.15 0.40 16 20 O -0.14 -1.44 18.45 -29.46 -0.54 -1.98 16 21 O -0.14 -1.31 18.45 -29.46 -0.54 -1.86 16 22 C 0.01 0.07 9.06 -39.58 -0.36 -0.29 16 23 C -0.04 -0.38 6.85 -79.95 -0.55 -0.92 16 24 N 0.03 0.28 4.45 33.96 0.15 0.43 16 25 O -0.14 -1.58 18.45 -29.46 -0.54 -2.12 16 26 O -0.14 -1.67 15.43 -29.46 -0.45 -2.12 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.11 1.30 7.30 -51.93 -0.38 0.92 16 33 H 0.11 1.30 7.30 -51.93 -0.38 0.92 16 34 H 0.19 0.88 6.99 -52.48 -0.37 0.51 16 35 H 0.18 0.51 7.61 -52.49 -0.40 0.11 16 36 H 0.18 1.16 7.16 -52.49 -0.38 0.78 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -31.81 337.36 -7.82 -39.63 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.13 Total: -3.76 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.07 Total: -8.86 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 1.04 Total: -24.46 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -2.72 Total: -23.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.81 -7.82 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.138 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds