Wall clock time and date at job start Tue Mar 31 2020 13:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48498 * 109.47167 * 240.00128 * 3 2 1 5 5 H 1.48503 * 109.46708 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46854 * 119.99913 * 3 2 1 7 7 C 1.37877 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99570 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00104 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99717 * 180.02562 * 11 10 9 14 14 C 1.45199 * 116.99614 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46928 * 179.97438 * 14 13 11 16 16 C 1.38260 * 120.00125 * 359.72385 * 15 14 13 17 17 C 1.38209 * 120.00080 * 179.80764 * 16 15 14 18 18 C 1.38257 * 119.99683 * 0.40472 * 17 16 15 19 19 N 1.48028 * 119.99758 * 179.83321 * 18 17 16 20 20 O 1.21798 * 119.99980 * 180.02562 * 19 18 17 21 21 O 1.21800 * 119.99588 * 0.02562 * 19 18 17 22 22 C 1.38207 * 120.00312 * 359.85110 * 18 17 16 23 23 C 1.38213 * 119.99713 * 179.97438 * 15 14 13 24 24 N 1.48019 * 120.00182 * 359.97438 * 23 15 14 25 25 O 1.21804 * 119.99458 * 179.97438 * 24 23 15 26 26 O 1.21800 * 120.00107 * 0.02562 * 24 23 15 27 27 H 0.96999 * 120.00252 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47089 * 59.99899 * 9 7 2 29 29 H 1.09003 * 109.47404 * 299.99828 * 9 7 2 30 30 H 1.09000 * 109.47151 * 59.99992 * 10 9 7 31 31 H 1.09003 * 109.47028 * 299.99448 * 10 9 7 32 32 H 1.09002 * 109.47177 * 299.99820 * 14 13 11 33 33 H 1.09001 * 109.47399 * 59.99991 * 14 13 11 34 34 H 1.08005 * 119.99445 * 0.02562 * 16 15 14 35 35 H 1.07996 * 120.00308 * 180.23030 * 17 16 15 36 36 H 1.07997 * 119.99959 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2835 -4.9672 -0.0015 13 8 2.1629 -6.1297 -0.0031 14 6 1.3721 -7.3474 -0.0031 15 6 2.2901 -8.5425 -0.0045 16 6 3.6608 -8.3614 -0.0113 17 6 4.5027 -9.4574 -0.0085 18 6 3.9742 -10.7350 -0.0074 19 7 4.8759 -11.9089 -0.0082 20 8 4.4104 -13.0344 -0.0077 21 8 6.0834 -11.7493 -0.0093 22 6 2.6040 -10.9161 -0.0060 23 6 1.7618 -9.8197 -0.0042 24 7 0.2943 -10.0136 -0.0020 25 8 -0.1711 -11.1392 -0.0022 26 8 -0.4476 -9.0477 -0.0009 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8726 -3.6047 0.8877 31 1 2.8712 -3.6040 -0.8923 32 1 0.7436 -7.3725 0.8872 33 1 0.7428 -7.3720 -0.8928 34 1 4.0735 -7.3633 -0.0152 35 1 5.5733 -9.3160 -0.0101 36 1 2.1913 -11.9141 -0.0056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:26 Heat of formation + Delta-G solvation = -81.354949 kcal Electronic energy + Delta-G solvation = -26039.221126 eV Core-core repulsion = 21688.080866 eV Total energy + Delta-G solvation = -4351.140260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.82705 -43.39888 -41.75019 -40.86896 -38.19370 -37.89956 -37.77049 -35.64394 -34.56739 -33.55164 -33.10744 -30.01440 -28.24513 -28.01095 -26.28337 -24.73199 -23.85872 -23.28894 -21.54747 -21.40600 -20.28096 -19.74545 -19.13583 -19.07500 -19.04949 -18.79454 -18.35923 -17.89608 -17.85055 -16.91272 -16.51368 -16.36509 -15.79336 -15.65197 -14.81265 -14.46639 -14.21678 -14.05948 -13.81027 -13.73819 -13.23964 -12.91787 -12.89355 -12.79066 -12.60174 -12.59540 -12.54151 -12.45340 -12.36106 -12.21984 -11.95862 -11.75741 -11.48673 -11.35776 -11.29028 -10.96868 -10.55609 -8.18799 -6.32348 -1.85483 -1.56148 -0.34102 -0.30552 -0.12954 0.12255 1.18635 1.27022 1.45819 1.48270 1.52346 1.56134 2.43122 2.64088 2.71046 2.87158 2.97528 3.15673 3.17867 3.67644 3.82949 3.85196 3.90901 4.11570 4.16724 4.36934 4.49097 4.50939 4.69506 4.85381 4.91002 4.97831 5.23033 5.49341 5.57502 5.82469 6.09518 6.13633 6.21931 6.70622 6.87299 7.38363 8.93428 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.002363 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.703831 B =11845.941046 C =13231.894170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.034 3.966 10 C -0.090 4.090 11 C 0.470 3.530 12 O -0.536 6.536 13 O -0.345 6.345 14 C 0.090 3.910 15 C 0.028 3.972 16 C -0.081 4.081 17 C 0.023 3.977 18 C -0.051 4.051 19 N 0.029 4.971 20 O -0.175 6.175 21 O -0.132 6.132 22 C 0.017 3.983 23 C -0.048 4.048 24 N 0.028 4.972 25 O -0.140 6.140 26 O -0.178 6.178 27 H 0.263 0.737 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.206 0.794 35 H 0.209 0.791 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.133 -22.141 -0.032 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.099 0.901 9 C -0.003 4.003 10 C -0.127 4.127 11 C 0.315 3.685 12 O -0.424 6.424 13 O -0.263 6.263 14 C 0.016 3.984 15 C 0.027 3.973 16 C -0.100 4.100 17 C 0.004 3.996 18 C -0.135 4.135 19 N 0.550 4.450 20 O -0.386 6.386 21 O -0.355 6.355 22 C -0.003 4.003 23 C -0.132 4.132 24 N 0.545 4.455 25 O -0.361 6.361 26 O -0.385 6.385 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.223 0.777 35 H 0.226 0.774 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.807 -21.390 -0.032 24.931 hybrid contribution -0.950 0.264 0.004 0.986 sum 11.858 -21.126 -0.027 24.226 Atomic orbital electron populations 1.70148 1.08256 1.27934 1.51306 1.26084 0.95660 1.03852 0.94684 0.85409 0.78048 0.77509 0.79510 1.18665 1.21764 1.18679 1.21625 0.94212 0.91173 1.50948 0.90084 1.18833 0.93856 0.92117 0.95508 1.21557 0.99192 0.85047 1.06923 1.24608 0.87285 0.85837 0.70766 1.90711 1.17605 1.87882 1.46166 1.86390 1.40941 1.14100 1.84866 1.22076 0.91107 0.79435 1.05732 1.19974 0.96763 0.90875 0.89711 1.21550 0.88716 1.02345 0.97384 1.21953 1.05348 0.87326 0.84951 1.20890 0.89091 0.87191 1.16327 1.43500 1.01597 1.02205 0.97687 1.94628 1.80212 1.09380 1.54401 1.94579 0.96488 1.92516 1.51878 1.20612 0.90502 1.01162 0.87984 1.20432 0.79900 0.94820 1.18040 1.43628 1.03328 1.00684 0.97879 1.94570 1.79419 1.10038 1.52089 1.94669 1.57243 1.32076 1.54556 0.92855 0.99238 0.99233 0.85838 0.85845 0.87744 0.87741 0.77708 0.77366 0.79241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.54 -28.30 9.11 25.60 0.23 -28.07 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.71 4.26 29.85 0.13 1.83 16 10 C -0.09 -3.04 5.75 29.85 0.17 -2.86 16 11 C 0.47 15.36 7.96 71.24 0.57 15.93 16 12 O -0.54 -22.59 15.73 21.97 0.35 -22.25 16 13 O -0.35 -7.79 8.69 -51.42 -0.45 -8.24 16 14 C 0.09 1.89 4.10 71.24 0.29 2.18 16 15 C 0.03 0.41 5.88 -19.86 -0.12 0.29 16 16 C -0.08 -0.63 9.38 22.27 0.21 -0.42 16 17 C 0.02 0.13 9.56 22.27 0.21 0.35 16 18 C -0.05 -0.56 6.85 36.37 0.25 -0.31 16 19 N 0.03 0.45 4.45 -46.46 -0.21 0.24 16 20 O -0.18 -3.26 18.45 18.89 0.35 -2.91 16 21 O -0.13 -2.08 18.45 18.89 0.35 -1.73 16 22 C 0.02 0.22 9.06 22.27 0.20 0.42 16 23 C -0.05 -0.75 6.85 36.37 0.25 -0.50 16 24 N 0.03 0.61 4.45 -46.46 -0.21 0.40 16 25 O -0.14 -3.17 18.45 18.88 0.35 -2.82 16 26 O -0.18 -4.64 15.43 18.89 0.29 -4.35 16 27 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 28 H -0.01 -0.62 8.10 -2.39 -0.02 -0.63 16 29 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 30 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.10 2.45 7.30 -2.39 -0.02 2.44 16 33 H 0.10 2.45 7.30 -2.39 -0.02 2.43 16 34 H 0.21 0.89 6.99 -2.91 -0.02 0.87 16 35 H 0.21 -0.03 7.61 -2.91 -0.02 -0.05 16 36 H 0.19 2.17 7.16 -2.91 -0.02 2.15 16 Total: -1.00 -72.55 337.36 7.14 -65.41 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: 1.15 Total: -0.31 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 2.86 Total: -10.99 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.13 Total: -55.66 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: 1.24 Total: -42.30 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -72.55 7.14 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.942 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds