Wall clock time and date at job start Tue Mar 31 2020 14:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99965 * 2 1 4 4 H 1.48504 * 109.46678 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47314 * 119.99841 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47062 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00556 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99868 * 180.02562 * 11 10 9 14 14 S 1.65599 * 120.00221 * 179.97438 * 13 11 10 15 15 O 1.42101 * 106.40292 * 311.45984 * 14 13 11 16 16 O 1.42097 * 106.40314 * 178.53731 * 14 13 11 17 17 N 1.65599 * 107.21805 * 64.99869 * 14 13 11 18 18 C 1.46540 * 124.95514 * 270.02774 * 17 14 13 19 19 C 1.53753 * 105.18073 * 179.97438 * 18 17 14 20 20 C 1.51218 * 104.54114 * 359.97438 * 19 18 17 21 21 C 1.38170 * 130.98507 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.14876 * 180.02562 * 21 20 19 23 23 C 1.38297 * 119.83456 * 359.88807 * 22 21 20 24 24 C 1.37832 * 120.23281 * 0.14900 * 23 22 21 25 25 C 1.38592 * 108.53689 * 359.97438 * 20 19 18 26 26 H 0.96998 * 120.00257 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47563 * 60.00104 * 9 7 2 28 28 H 1.08995 * 109.47489 * 299.99536 * 9 7 2 29 29 H 1.09001 * 109.46770 * 60.00320 * 10 9 7 30 30 H 1.08995 * 109.46859 * 300.00288 * 10 9 7 31 31 H 0.97001 * 119.99753 * 0.02562 * 13 11 10 32 32 H 1.08997 * 110.29907 * 298.91866 * 18 17 14 33 33 H 1.08997 * 110.29952 * 60.97792 * 18 17 14 34 34 H 1.09000 * 110.42334 * 118.76551 * 19 18 17 35 35 H 1.09005 * 110.42005 * 241.23346 * 19 18 17 36 36 H 1.07997 * 119.92277 * 0.04606 * 21 20 19 37 37 H 1.08000 * 120.08219 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.88332 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.85638 * 180.18370 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 16 1.3377 -7.5685 0.0003 15 8 0.3551 -7.4646 1.0215 16 8 2.3172 -8.5974 -0.0340 17 7 0.5141 -7.6590 -1.4336 18 6 -0.8461 -7.1601 -1.6535 19 6 -1.1571 -7.4745 -3.1260 20 6 0.0938 -8.1492 -3.6426 21 6 0.4014 -8.6536 -4.8916 22 6 1.6343 -9.2349 -5.1212 23 6 2.5615 -9.3087 -4.0977 24 6 2.2590 -8.8076 -2.8498 25 6 1.0150 -8.2197 -2.6096 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8906 30 1 2.8719 -3.6043 -0.8894 31 1 3.1357 -6.1343 0.0014 32 1 -1.5486 -7.6767 -0.9996 33 1 -0.8874 -6.0851 -1.4783 34 1 -2.0109 -8.1482 -3.1990 35 1 -1.3488 -6.5549 -3.6790 36 1 -0.3230 -8.5933 -5.6903 37 1 1.8735 -9.6292 -6.0978 38 1 3.5252 -9.7623 -4.2763 39 1 2.9887 -8.8658 -2.0557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813064680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:34 Heat of formation + Delta-G solvation = -87.495790 kcal Electronic energy + Delta-G solvation = -25429.726167 eV Core-core repulsion = 21656.905586 eV Total energy + Delta-G solvation = -3772.820581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59980 -39.81013 -37.52835 -36.60717 -36.15405 -34.34772 -33.65272 -32.47432 -31.11813 -29.69318 -29.06733 -26.10128 -23.29407 -22.93857 -22.65295 -21.60677 -20.43788 -19.82775 -18.56879 -17.87706 -17.25091 -16.48238 -16.03946 -15.98846 -15.84810 -15.39822 -15.02555 -14.67229 -14.54567 -14.00931 -13.93261 -13.18143 -12.92130 -12.85730 -12.83910 -12.77534 -12.52496 -12.32695 -12.23225 -12.17840 -11.94328 -11.68819 -11.35738 -11.00244 -10.97781 -10.87207 -10.71488 -10.52651 -10.12891 -10.04731 -9.55833 -9.23330 -8.97752 -8.41829 -8.09633 -6.05710 -4.11005 0.08665 1.19490 1.22916 2.22314 2.56734 3.14720 3.29079 3.34456 3.35635 3.60707 3.91462 4.10963 4.38326 4.52507 4.71561 4.80528 4.89873 5.00997 5.02942 5.12319 5.28547 5.29741 5.30994 5.55487 5.66187 5.74478 5.84451 5.93851 5.96361 5.99937 6.11740 6.23047 6.37381 6.41031 6.53366 6.81111 6.87739 7.59868 7.67857 7.79139 7.92884 8.28271 8.95688 9.53396 11.05035 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003420 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.251568 B = 8185.108587 C = 8703.074590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.034 3.966 10 C -0.131 4.131 11 C 0.531 3.469 12 O -0.486 6.486 13 N -1.066 6.066 14 S 2.778 3.222 15 O -0.936 6.936 16 O -0.959 6.959 17 N -0.936 5.936 18 C 0.110 3.890 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.146 4.146 23 C -0.088 4.088 24 C -0.155 4.155 25 C 0.160 3.840 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.433 0.567 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -18.937 -8.886 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.172 4.172 11 C 0.320 3.680 12 O -0.356 6.356 13 N -0.834 5.834 14 S 2.788 3.212 15 O -0.920 6.920 16 O -0.943 6.943 17 N -0.762 5.762 18 C -0.013 4.013 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.165 4.165 23 C -0.106 4.106 24 C -0.177 4.177 25 C 0.063 3.937 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.268 0.732 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.334 -19.365 -7.962 21.068 hybrid contribution 1.061 1.166 -0.186 1.587 sum 3.395 -18.199 -8.148 20.227 Atomic orbital electron populations 1.69972 1.06067 1.26916 1.49686 1.25011 0.94846 0.99292 0.95069 0.86623 0.79543 0.83002 0.78602 1.20211 1.21231 1.20189 1.21117 0.92954 0.90777 1.52120 0.92489 1.18985 0.93139 0.89312 0.98964 1.22071 1.01070 0.90473 1.03630 1.21767 0.88624 0.86002 0.71630 1.90780 1.13542 1.86743 1.44578 1.55577 1.21902 1.24254 1.81705 1.02542 0.73259 0.73118 0.72320 1.93692 1.59880 1.85855 1.52558 1.93634 1.60473 1.53943 1.86296 1.56429 1.25836 1.68291 1.25632 1.22147 0.80071 1.02095 0.96995 1.21133 0.95777 1.01069 0.94128 1.20184 0.96277 1.03099 0.93664 1.20419 0.96947 0.97266 0.94987 1.21018 0.93940 1.02123 0.99411 1.20846 0.99477 0.98391 0.91921 1.20986 0.95168 1.02324 0.99209 1.18109 0.94479 0.95497 0.85617 0.92754 0.95565 0.95400 0.88945 0.89005 0.73152 0.89496 0.87813 0.89205 0.88876 0.85713 0.85637 0.85314 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.13 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.53 9.22 7.74 -10.99 -0.09 9.13 16 12 O -0.49 -9.99 12.72 -11.51 -0.15 -10.13 16 13 N -1.07 -14.34 5.75 31.22 0.18 -14.16 16 14 S 2.78 41.21 5.86 -107.50 -0.63 40.58 16 15 O -0.94 -17.19 16.63 -64.61 -1.07 -18.26 16 16 O -0.96 -14.24 15.38 -57.17 -0.88 -15.12 16 17 N -0.94 -13.05 3.52 -58.11 -0.20 -13.25 16 18 C 0.11 1.45 6.81 -3.63 -0.02 1.42 16 19 C -0.08 -0.87 6.94 -27.24 -0.19 -1.06 16 20 C -0.13 -1.48 6.23 -104.26 -0.65 -2.13 16 21 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 22 C -0.15 -1.30 10.06 -39.56 -0.40 -1.70 16 23 C -0.09 -0.85 10.02 -39.71 -0.40 -1.25 16 24 C -0.16 -1.86 9.42 -39.19 -0.37 -2.23 16 25 C 0.16 2.09 6.63 -83.66 -0.55 1.54 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.43 4.07 8.83 -34.47 -0.30 3.76 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.54 6.06 -51.93 -0.31 1.23 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.14 1.67 6.09 -52.49 -0.32 1.35 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -34.97 340.47 -10.36 -45.33 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.70 Total: 1.79 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.75 Total: -12.27 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.71 Total: -52.98 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -2.10 Total: -43.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 41.21 SS G_CDS: -0.63 Total: 40.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.97 -10.36 -45.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813064680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.163 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds