Wall clock time and date at job start Tue Mar 31 2020 14:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99965 * 2 1 4 4 H 1.48504 * 109.46678 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47314 * 119.99841 * 3 2 1 7 7 C 1.37877 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47062 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00556 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99868 * 180.02562 * 11 10 9 14 14 S 1.65599 * 120.00221 * 179.97438 * 13 11 10 15 15 O 1.42101 * 106.40292 * 311.45984 * 14 13 11 16 16 O 1.42097 * 106.40314 * 178.53731 * 14 13 11 17 17 N 1.65599 * 107.21805 * 64.99869 * 14 13 11 18 18 C 1.46540 * 124.95514 * 270.02774 * 17 14 13 19 19 C 1.53753 * 105.18073 * 179.97438 * 18 17 14 20 20 C 1.51218 * 104.54114 * 359.97438 * 19 18 17 21 21 C 1.38170 * 130.98507 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.14876 * 180.02562 * 21 20 19 23 23 C 1.38297 * 119.83456 * 359.88807 * 22 21 20 24 24 C 1.37832 * 120.23281 * 0.14900 * 23 22 21 25 25 C 1.38592 * 108.53689 * 359.97438 * 20 19 18 26 26 H 0.96998 * 120.00257 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47563 * 60.00104 * 9 7 2 28 28 H 1.08995 * 109.47489 * 299.99536 * 9 7 2 29 29 H 1.09001 * 109.46770 * 60.00320 * 10 9 7 30 30 H 1.08995 * 109.46859 * 300.00288 * 10 9 7 31 31 H 0.97001 * 119.99753 * 0.02562 * 13 11 10 32 32 H 1.08997 * 110.29907 * 298.91866 * 18 17 14 33 33 H 1.08997 * 110.29952 * 60.97792 * 18 17 14 34 34 H 1.09000 * 110.42334 * 118.76551 * 19 18 17 35 35 H 1.09005 * 110.42005 * 241.23346 * 19 18 17 36 36 H 1.07997 * 119.92277 * 0.04606 * 21 20 19 37 37 H 1.08000 * 120.08219 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.88332 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.85638 * 180.18370 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 16 1.3377 -7.5685 0.0003 15 8 0.3551 -7.4646 1.0215 16 8 2.3172 -8.5974 -0.0340 17 7 0.5141 -7.6590 -1.4336 18 6 -0.8461 -7.1601 -1.6535 19 6 -1.1571 -7.4745 -3.1260 20 6 0.0938 -8.1492 -3.6426 21 6 0.4014 -8.6536 -4.8916 22 6 1.6343 -9.2349 -5.1212 23 6 2.5615 -9.3087 -4.0977 24 6 2.2590 -8.8076 -2.8498 25 6 1.0150 -8.2197 -2.6096 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6044 0.8906 30 1 2.8719 -3.6043 -0.8894 31 1 3.1357 -6.1343 0.0014 32 1 -1.5486 -7.6767 -0.9996 33 1 -0.8874 -6.0851 -1.4783 34 1 -2.0109 -8.1482 -3.1990 35 1 -1.3488 -6.5549 -3.6790 36 1 -0.3230 -8.5933 -5.6903 37 1 1.8735 -9.6292 -6.0978 38 1 3.5252 -9.7623 -4.2763 39 1 2.9887 -8.8658 -2.0557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813064680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:33 Heat of formation + Delta-G solvation = -111.941149 kcal Electronic energy + Delta-G solvation = -25430.786198 eV Core-core repulsion = 21656.905586 eV Total energy + Delta-G solvation = -3773.880612 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47373 -41.23961 -38.78112 -37.46879 -37.43902 -35.69093 -35.63031 -33.33893 -33.00291 -30.53998 -29.91502 -27.99712 -24.48619 -24.14624 -23.83176 -22.42913 -22.00072 -20.99994 -19.67880 -19.24489 -18.72594 -17.89934 -17.45389 -16.94047 -16.80417 -16.56636 -16.47870 -16.25619 -15.63642 -15.53703 -14.78883 -14.47721 -14.40836 -14.08180 -13.93085 -13.78586 -13.73784 -13.61827 -13.43971 -13.39688 -13.31329 -12.92535 -12.79863 -12.52925 -12.44843 -12.14397 -11.94363 -11.76159 -11.75158 -11.47963 -11.39120 -11.14989 -10.54316 -9.75841 -8.98639 -8.17451 -6.30693 -1.09731 0.40779 0.41552 0.91534 1.30761 1.44570 1.47498 1.55191 1.98952 2.43095 2.76527 2.82291 3.16286 3.16563 3.40230 3.66730 3.87807 3.95077 4.08751 4.11816 4.32650 4.37024 4.42305 4.47939 4.59536 4.65461 4.81261 4.92374 4.94524 4.98187 5.15484 5.28000 5.45335 5.50148 5.56555 5.60574 5.60934 5.67144 5.84347 6.08755 6.15143 6.44504 6.87991 7.39501 8.94575 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003420 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.251568 B = 8185.108587 C = 8703.074590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.036 3.964 10 C -0.121 4.121 11 C 0.537 3.463 12 O -0.523 6.523 13 N -1.048 6.048 14 S 2.793 3.207 15 O -0.975 6.975 16 O -0.959 6.959 17 N -0.938 5.938 18 C 0.103 3.897 19 C -0.076 4.076 20 C -0.139 4.139 21 C -0.079 4.079 22 C -0.138 4.138 23 C -0.090 4.090 24 C -0.172 4.172 25 C 0.126 3.874 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.012 1.012 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.451 0.549 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -19.652 -10.856 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.095 0.905 9 C -0.001 4.001 10 C -0.163 4.163 11 C 0.327 3.673 12 O -0.396 6.396 13 N -0.817 5.817 14 S 2.803 3.197 15 O -0.959 6.959 16 O -0.943 6.943 17 N -0.766 5.766 18 C -0.021 4.021 19 C -0.114 4.114 20 C -0.144 4.144 21 C -0.098 4.098 22 C -0.157 4.157 23 C -0.108 4.108 24 C -0.194 4.194 25 C 0.030 3.970 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.007 0.993 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.292 0.708 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.663 -20.112 -9.934 22.911 hybrid contribution 0.372 1.291 0.341 1.386 sum 5.034 -18.821 -9.593 21.716 Atomic orbital electron populations 1.70145 1.08150 1.27851 1.51300 1.26051 0.95663 1.03687 0.94684 0.85438 0.78096 0.77711 0.79390 1.18712 1.21552 1.18942 1.21650 0.94091 0.91467 1.50974 0.90453 1.18781 0.93766 0.92053 0.95541 1.21875 0.99717 0.88288 1.06375 1.21549 0.88010 0.86709 0.71064 1.90789 1.15220 1.87344 1.46280 1.55209 1.23025 1.22729 1.80775 1.01914 0.72744 0.72972 0.72078 1.93644 1.61145 1.86388 1.54710 1.93628 1.60402 1.53778 1.86493 1.56224 1.25960 1.68633 1.25747 1.22205 0.80045 1.00648 0.99206 1.21142 0.96428 1.01871 0.91994 1.20443 0.96180 1.03518 0.94217 1.20803 0.97909 0.96347 0.94728 1.21457 0.93155 1.00619 1.00499 1.21222 1.00851 0.97612 0.91102 1.21152 0.94802 1.03147 1.00278 1.18412 0.95695 0.97284 0.85610 0.92874 0.98850 0.99335 0.86316 0.85986 0.70840 0.89333 0.90244 0.86875 0.88265 0.83101 0.82424 0.82699 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.54 -29.24 9.11 25.60 0.23 -29.01 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.04 1.88 4.26 29.85 0.13 2.01 16 10 C -0.12 -4.34 5.64 29.85 0.17 -4.17 16 11 C 0.54 18.90 7.74 87.66 0.68 19.57 16 12 O -0.52 -22.63 12.72 13.30 0.17 -22.46 16 13 N -1.05 -27.83 5.75 -173.54 -1.00 -28.83 16 14 S 2.79 84.22 5.86 -56.49 -0.33 83.89 16 15 O -0.98 -37.20 16.63 -120.89 -2.01 -39.21 16 16 O -0.96 -28.23 15.38 -128.00 -1.97 -30.20 16 17 N -0.94 -26.67 3.52 -337.78 -1.19 -27.86 16 18 C 0.10 2.81 6.81 86.63 0.59 3.40 16 19 C -0.08 -1.56 6.94 30.27 0.21 -1.35 16 20 C -0.14 -3.04 6.23 -19.63 -0.12 -3.16 16 21 C -0.08 -1.31 10.04 22.25 0.22 -1.08 16 22 C -0.14 -1.99 10.06 22.28 0.22 -1.77 16 23 C -0.09 -1.50 10.02 22.19 0.22 -1.28 16 24 C -0.17 -3.92 9.42 22.52 0.21 -3.71 16 25 C 0.13 3.23 6.63 38.34 0.25 3.48 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H -0.01 -0.40 8.10 -2.39 -0.02 -0.42 16 28 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 29 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.45 7.83 8.83 -96.75 -0.85 6.97 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.55 6.06 -2.39 -0.01 2.54 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.14 3.11 6.09 -2.91 -0.02 3.09 16 Total: -1.00 -78.64 340.47 -0.30 -78.94 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.24 Total: 14.48 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 3.48 Total: -16.76 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -1.90 Total: -113.45 kcal Atomic # 8 Polarization: -88.06 SS G_CDS: -3.81 Total: -91.87 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 84.22 SS G_CDS: -0.33 Total: 83.89 kcal Total: -78.64 -0.30 -78.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813064680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.999 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds