Wall clock time and date at job start Tue Mar 31 2020 14:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47060 * 270.00142 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.46958 * 149.99788 * 3 2 1 7 7 C 1.37871 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.42897 * 113.99958 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47063 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.46874 * 65.00238 * 12 11 10 14 14 C 1.34236 * 116.99949 * 179.97438 * 13 12 11 15 15 O 1.20821 * 119.99773 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00117 * 179.97438 * 14 13 12 17 17 C 1.50699 * 115.55838 * 34.31288 * 16 14 13 18 18 C 1.38239 * 119.98387 * 145.41990 * 17 16 14 19 19 C 1.38220 * 120.01272 * 179.72644 * 18 17 16 20 20 C 1.38345 * 119.98320 * 0.54016 * 19 18 17 21 21 Cl 1.73601 * 120.01189 * 179.75198 * 20 19 18 22 22 C 1.38351 * 119.97786 * 359.72861 * 20 19 18 23 23 C 1.38216 * 119.98537 * 0.02562 * 22 20 19 24 24 C 1.53000 * 117.49604 * 180.02562 * 16 14 13 25 25 C 1.52997 * 117.49669 * 248.62528 * 16 14 13 26 26 H 0.96997 * 119.99749 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46665 * 59.99780 * 9 7 2 28 28 H 1.08997 * 109.47346 * 300.00096 * 9 7 2 29 29 H 1.09000 * 109.47433 * 60.00834 * 11 10 9 30 30 H 1.09001 * 109.47272 * 299.99846 * 11 10 9 31 31 H 1.08993 * 109.46843 * 305.00041 * 12 11 10 32 32 H 1.09001 * 109.47166 * 184.99606 * 12 11 10 33 33 H 1.07998 * 119.99561 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.00872 * 180.27136 * 19 18 17 35 35 H 1.08003 * 120.00716 * 179.97438 * 22 20 19 36 36 H 1.07996 * 119.99437 * 180.02562 * 23 22 20 37 37 H 1.08990 * 117.49990 * 359.97438 * 24 16 14 38 38 H 1.09004 * 117.49237 * 214.97804 * 24 16 14 39 39 H 1.08999 * 117.49685 * 145.02383 * 25 16 14 40 40 H 1.08999 * 117.52022 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3984 -5.8887 1.2419 14 6 4.3925 -6.7765 1.4022 15 8 4.6275 -7.5835 0.5343 16 6 5.2153 -6.7666 2.6648 17 6 4.4731 -6.3918 3.9216 18 6 4.8088 -6.9838 5.1248 19 6 4.1322 -6.6364 6.2789 20 6 3.1114 -5.7041 6.2278 21 17 2.2569 -5.2719 7.6758 22 6 2.7721 -5.1159 5.0224 23 6 3.4528 -5.4604 3.8698 24 6 6.3340 -7.8031 2.7870 25 6 6.6777 -6.3314 2.5515 26 1 -0.4849 0.8400 0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 0.9454 -4.9823 -0.8903 30 1 0.9447 -4.9827 0.8897 31 1 3.3223 -5.7955 -0.8406 32 1 2.1823 -6.9375 -0.0893 33 1 5.6026 -7.7151 5.1638 34 1 4.3976 -7.0958 7.2197 35 1 1.9749 -4.3883 4.9819 36 1 3.1883 -5.0011 2.9289 37 1 6.4745 -8.4924 1.9545 38 1 6.5330 -8.2143 3.7767 39 1 7.1030 -5.7741 3.3861 40 1 7.0451 -6.0526 1.5639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815172675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:47 Heat of formation + Delta-G solvation = -88.454003 kcal Electronic energy + Delta-G solvation = -24563.090204 eV Core-core repulsion = 20755.891614 eV Total energy + Delta-G solvation = -3807.198590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01466 -39.42122 -37.69167 -36.85869 -36.37852 -35.79503 -32.80131 -31.29615 -30.62882 -30.10620 -27.04799 -25.58745 -23.29974 -22.89442 -22.42641 -22.29614 -21.80323 -20.00462 -18.20920 -17.02112 -16.91608 -16.53585 -16.35800 -15.58866 -15.29374 -15.05947 -14.89223 -14.69537 -14.37875 -13.96907 -13.65268 -13.52431 -13.25630 -12.99426 -12.81892 -12.04280 -12.02140 -11.97547 -11.75492 -11.60292 -11.39670 -11.00509 -10.97197 -10.90126 -10.87945 -10.77895 -10.69185 -10.48119 -10.40998 -10.07557 -9.16274 -9.15645 -8.91487 -8.65390 -8.25084 -6.14461 -4.16330 0.89797 1.17408 1.99702 2.06174 2.55699 3.28538 3.31411 3.33861 3.39017 3.63366 4.12718 4.29441 4.33462 4.48482 4.59068 4.67252 4.72661 4.79951 5.14731 5.16340 5.22388 5.29597 5.32845 5.36768 5.40188 5.53374 5.59540 5.76578 5.81242 5.86792 5.89465 6.01045 6.04466 6.24666 6.37421 6.49068 6.71783 7.01406 7.35912 7.73899 7.75865 8.09200 8.47978 8.95955 9.48724 10.97010 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.003704 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.978943 B = 7558.389638 C = 9456.571930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.070 3.930 13 O -0.332 6.332 14 C 0.503 3.497 15 O -0.510 6.510 16 C -0.103 4.103 17 C -0.050 4.050 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.034 4.034 21 Cl -0.075 7.075 22 C -0.104 4.104 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.454 -16.595 11.247 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.017 4.017 12 C -0.003 4.003 13 O -0.248 6.248 14 C 0.346 3.654 15 O -0.399 6.399 16 C -0.105 4.105 17 C -0.050 4.050 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.060 4.060 21 Cl -0.046 7.046 22 C -0.123 4.123 23 C -0.104 4.104 24 C -0.176 4.176 25 C -0.169 4.169 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.443 -16.616 11.092 22.097 hybrid contribution -0.263 0.907 -0.036 0.945 sum 9.180 -15.710 11.055 21.291 Atomic orbital electron populations 1.69959 1.06095 1.27222 1.50446 1.24933 0.94964 0.99408 0.95064 0.86349 0.79719 0.82267 0.78259 1.20456 1.21036 1.19580 1.21032 0.94075 0.89259 1.50978 0.91525 1.20239 0.88718 0.83455 0.95525 1.87917 1.35326 1.12569 1.95237 1.22332 0.93196 0.85465 1.00678 1.23296 0.93792 0.98939 0.84263 1.86572 1.43373 1.53651 1.41209 1.22124 0.78655 0.77926 0.86699 1.90642 1.67870 1.38203 1.43173 1.19644 0.90308 1.10051 0.90461 1.18825 0.96783 0.97451 0.91925 1.20913 1.00299 0.99902 0.91194 1.20926 0.95583 0.97719 0.99092 1.21031 0.96939 0.99969 0.88100 1.98371 1.76641 1.92424 1.37151 1.21209 1.00643 0.99907 0.90509 1.21683 0.93613 0.95317 0.99750 1.23262 0.96935 0.92707 1.04715 1.23220 0.91057 0.97699 1.04937 0.92612 0.97646 0.97455 0.91865 0.93150 0.90352 0.90324 0.84955 0.84947 0.84315 0.82093 0.86690 0.86956 0.86813 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.92 9.43 -34.44 -0.32 -15.24 16 8 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 9 C 0.19 5.19 5.69 36.01 0.20 5.40 16 10 O -0.39 -9.10 10.30 -38.80 -0.40 -9.50 16 11 C 0.06 1.07 6.33 37.16 0.24 1.30 16 12 C 0.07 1.07 5.85 37.16 0.22 1.29 16 13 O -0.33 -5.26 6.86 -42.04 -0.29 -5.55 16 14 C 0.50 7.34 7.47 36.01 0.27 7.61 16 15 O -0.51 -8.21 16.01 -18.75 -0.30 -8.51 16 16 C -0.10 -1.19 2.50 -156.81 -0.39 -1.58 16 17 C -0.05 -0.58 5.44 -104.62 -0.57 -1.15 16 18 C -0.11 -1.00 9.39 -39.59 -0.37 -1.37 16 19 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 20 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 21 Cl -0.07 -0.82 28.96 -51.86 -1.50 -2.32 16 22 C -0.10 -1.33 9.83 -39.55 -0.39 -1.72 16 23 C -0.09 -1.16 9.08 -39.59 -0.36 -1.52 16 24 C -0.14 -1.18 9.38 -26.75 -0.25 -1.43 16 25 C -0.13 -1.22 9.93 -26.75 -0.27 -1.48 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 33 H 0.13 0.89 5.93 -52.49 -0.31 0.57 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.16 2.48 5.29 -52.49 -0.28 2.21 16 37 H 0.11 1.02 7.67 -51.93 -0.40 0.63 16 38 H 0.11 0.67 6.08 -51.93 -0.32 0.35 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -32.15 360.51 -9.15 -41.30 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -5.07 Total: -1.21 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.73 Total: -10.49 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.99 Total: -23.56 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.15 -9.15 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.157 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds