Wall clock time and date at job start Tue Mar 31 2020 14:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47060 * 270.00142 * 3 2 1 5 5 H 1.48501 * 109.47004 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.46958 * 149.99788 * 3 2 1 7 7 C 1.37871 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.42897 * 113.99958 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.47063 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.46874 * 65.00238 * 12 11 10 14 14 C 1.34236 * 116.99949 * 179.97438 * 13 12 11 15 15 O 1.20821 * 119.99773 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00117 * 179.97438 * 14 13 12 17 17 C 1.50699 * 115.55838 * 34.31288 * 16 14 13 18 18 C 1.38239 * 119.98387 * 145.41990 * 17 16 14 19 19 C 1.38220 * 120.01272 * 179.72644 * 18 17 16 20 20 C 1.38345 * 119.98320 * 0.54016 * 19 18 17 21 21 Cl 1.73601 * 120.01189 * 179.75198 * 20 19 18 22 22 C 1.38351 * 119.97786 * 359.72861 * 20 19 18 23 23 C 1.38216 * 119.98537 * 0.02562 * 22 20 19 24 24 C 1.53000 * 117.49604 * 180.02562 * 16 14 13 25 25 C 1.52997 * 117.49669 * 248.62528 * 16 14 13 26 26 H 0.96997 * 119.99749 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46665 * 59.99780 * 9 7 2 28 28 H 1.08997 * 109.47346 * 300.00096 * 9 7 2 29 29 H 1.09000 * 109.47433 * 60.00834 * 11 10 9 30 30 H 1.09001 * 109.47272 * 299.99846 * 11 10 9 31 31 H 1.08993 * 109.46843 * 305.00041 * 12 11 10 32 32 H 1.09001 * 109.47166 * 184.99606 * 12 11 10 33 33 H 1.07998 * 119.99561 * 359.97438 * 18 17 16 34 34 H 1.08002 * 120.00872 * 180.27136 * 19 18 17 35 35 H 1.08003 * 120.00716 * 179.97438 * 22 20 19 36 36 H 1.07996 * 119.99437 * 180.02562 * 23 22 20 37 37 H 1.08990 * 117.49990 * 359.97438 * 24 16 14 38 38 H 1.09004 * 117.49237 * 214.97804 * 24 16 14 39 39 H 1.08999 * 117.49685 * 145.02383 * 25 16 14 40 40 H 1.08999 * 117.52022 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3984 -5.8887 1.2419 14 6 4.3925 -6.7765 1.4022 15 8 4.6275 -7.5835 0.5343 16 6 5.2153 -6.7666 2.6648 17 6 4.4731 -6.3918 3.9216 18 6 4.8088 -6.9838 5.1248 19 6 4.1322 -6.6364 6.2789 20 6 3.1114 -5.7041 6.2278 21 17 2.2569 -5.2719 7.6758 22 6 2.7721 -5.1159 5.0224 23 6 3.4528 -5.4604 3.8698 24 6 6.3340 -7.8031 2.7870 25 6 6.6777 -6.3314 2.5515 26 1 -0.4849 0.8400 0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 0.9454 -4.9823 -0.8903 30 1 0.9447 -4.9827 0.8897 31 1 3.3223 -5.7955 -0.8406 32 1 2.1823 -6.9375 -0.0893 33 1 5.6026 -7.7151 5.1638 34 1 4.3976 -7.0958 7.2197 35 1 1.9749 -4.3883 4.9819 36 1 3.1883 -5.0011 2.9289 37 1 6.4745 -8.4924 1.9545 38 1 6.5330 -8.2143 3.7767 39 1 7.1030 -5.7741 3.3861 40 1 7.0451 -6.0526 1.5639 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815172675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:45 Heat of formation + Delta-G solvation = -105.182305 kcal Electronic energy + Delta-G solvation = -24563.815598 eV Core-core repulsion = 20755.891614 eV Total energy + Delta-G solvation = -3807.923984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.05399 -40.37943 -38.94679 -38.17413 -37.51546 -36.82163 -34.95874 -32.22308 -31.72457 -31.30583 -29.09179 -26.62019 -24.58431 -24.13558 -23.84378 -23.18018 -22.99259 -21.01632 -19.20495 -18.70169 -18.02982 -17.89422 -17.81492 -17.06740 -16.44641 -16.40255 -16.12634 -15.95115 -15.72654 -15.27729 -14.70722 -14.54701 -14.39501 -14.24854 -13.96973 -13.77367 -13.31118 -12.95490 -12.84945 -12.80927 -12.72151 -12.63866 -12.39466 -12.34894 -12.03160 -11.81731 -11.79030 -11.70124 -11.53178 -11.49887 -11.29764 -10.90845 -10.29251 -10.02475 -9.51153 -8.33411 -6.45417 0.03331 0.31097 0.96623 1.13563 1.39322 1.41637 1.50750 1.53669 2.33123 2.47680 2.81541 3.00855 3.02812 3.29987 3.47297 3.59205 3.84646 3.87721 3.91653 3.99023 4.07116 4.31472 4.37685 4.44604 4.47239 4.54946 4.64110 4.67917 4.75184 4.83716 4.89388 5.03869 5.12771 5.15840 5.20957 5.29246 5.34490 5.52307 5.53197 5.80914 5.93715 6.47502 6.60576 6.77842 7.26213 8.78733 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.003704 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.978943 B = 7558.389638 C = 9456.571930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.407 6.407 11 C 0.055 3.945 12 C 0.074 3.926 13 O -0.346 6.346 14 C 0.497 3.503 15 O -0.531 6.531 16 C -0.130 4.130 17 C -0.050 4.050 18 C -0.093 4.093 19 C -0.106 4.106 20 C -0.043 4.043 21 Cl -0.074 7.074 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.128 4.128 26 H 0.271 0.729 27 H -0.009 1.009 28 H -0.011 1.011 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 -17.589 12.651 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.022 4.022 12 C 0.001 3.999 13 O -0.263 6.263 14 C 0.342 3.658 15 O -0.421 6.421 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.069 4.069 21 Cl -0.045 7.045 22 C -0.140 4.140 23 C -0.128 4.128 24 C -0.150 4.150 25 C -0.165 4.165 26 H 0.080 0.920 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.129 0.871 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.572 -17.631 12.494 24.513 hybrid contribution -0.947 1.123 -0.475 1.544 sum 10.625 -16.508 12.020 23.019 Atomic orbital electron populations 1.70059 1.07657 1.28650 1.50419 1.25897 0.95919 1.03187 0.93883 0.85241 0.78433 0.77257 0.78871 1.19239 1.19870 1.18975 1.21361 0.94036 0.90872 1.52361 0.92210 1.19856 0.88530 0.84362 0.93826 1.87862 1.35428 1.14074 1.95316 1.22622 0.94428 0.83419 1.01742 1.23233 0.93299 0.99119 0.84280 1.86625 1.44083 1.54446 1.41108 1.22821 0.78202 0.77076 0.87656 1.90617 1.68373 1.38877 1.44238 1.19774 0.90895 1.13587 0.88822 1.18891 0.96153 0.96966 0.92987 1.21270 1.00500 0.99494 0.89763 1.21301 0.94193 0.96437 1.00494 1.21131 0.97697 1.00560 0.87542 1.98367 1.76812 1.92534 1.36777 1.21141 1.00938 1.00574 0.91350 1.21501 0.95510 0.96992 0.98780 1.23455 0.93177 0.91917 1.06424 1.23374 0.88735 0.98927 1.05438 0.92018 0.99129 0.99287 0.90101 0.92700 0.90873 0.87555 0.81118 0.82017 0.85626 0.84983 0.87123 0.83473 0.84892 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -32.71 9.43 25.60 0.24 -32.47 16 8 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 9 C 0.21 11.67 5.69 71.24 0.41 12.07 16 10 O -0.41 -19.81 10.30 -145.57 -1.50 -21.31 16 11 C 0.05 1.98 6.33 71.99 0.46 2.44 16 12 C 0.07 2.30 5.85 71.99 0.42 2.72 16 13 O -0.35 -11.39 6.86 -48.83 -0.34 -11.72 16 14 C 0.50 14.58 7.47 71.24 0.53 15.11 16 15 O -0.53 -17.00 16.01 21.98 0.35 -16.64 16 16 C -0.13 -2.81 2.50 -53.67 -0.13 -2.94 16 17 C -0.05 -1.09 5.44 -19.86 -0.11 -1.20 16 18 C -0.09 -1.44 9.39 22.27 0.21 -1.23 16 19 C -0.11 -1.76 9.83 22.29 0.22 -1.54 16 20 C -0.04 -0.95 6.32 22.32 0.14 -0.81 16 21 Cl -0.07 -1.57 28.96 -2.72 -0.08 -1.65 16 22 C -0.12 -3.23 9.83 22.29 0.22 -3.01 16 23 C -0.11 -3.07 9.08 22.27 0.20 -2.87 16 24 C -0.11 -1.54 9.38 30.58 0.29 -1.25 16 25 C -0.13 -2.07 9.93 30.58 0.30 -1.77 16 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 32 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 33 H 0.17 1.29 5.93 -2.91 -0.02 1.27 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.13 4.44 5.29 -2.91 -0.02 4.43 16 37 H 0.11 1.67 7.67 -2.39 -0.02 1.65 16 38 H 0.15 0.93 6.08 -2.38 -0.01 0.91 16 39 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.60 360.51 5.67 -65.94 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.06 Total: 9.96 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.86 Total: -15.72 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.28 Total: -55.25 kcal Atomic # 8 Polarization: -48.20 SS G_CDS: -1.48 Total: -49.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -71.60 5.67 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815172675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.247 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds