Wall clock time and date at job start Tue Mar 31 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00080 * 3 2 1 5 5 H 1.48502 * 109.47266 * 30.00043 * 3 2 1 6 6 H 1.48505 * 109.47295 * 150.00183 * 3 2 1 7 7 C 1.37876 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00249 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99703 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99975 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47065 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47327 * 65.00003 * 12 11 10 14 14 C 1.34222 * 117.00469 * 179.97438 * 13 12 11 15 15 O 1.20830 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00563 * 179.97438 * 14 13 12 17 17 C 1.50702 * 115.54741 * 325.58817 * 16 14 13 18 18 C 1.38263 * 119.99356 * 34.40790 * 17 16 14 19 19 C 1.38227 * 120.02488 * 179.72422 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.00857 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99478 * 214.69222 * 17 16 14 24 24 C 1.52994 * 117.50011 * 111.24958 * 16 14 13 25 25 C 1.52992 * 117.50281 * 179.91569 * 16 14 13 26 26 H 0.97002 * 119.99949 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47082 * 60.00286 * 9 7 2 28 28 H 1.09000 * 109.47575 * 300.00117 * 9 7 2 29 29 H 1.09004 * 109.47392 * 59.99527 * 11 10 9 30 30 H 1.08994 * 109.47242 * 299.99515 * 11 10 9 31 31 H 1.09002 * 109.47746 * 304.99879 * 12 11 10 32 32 H 1.09005 * 109.47240 * 185.00022 * 12 11 10 33 33 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.98919 * 180.25954 * 19 18 17 35 35 H 1.07993 * 120.00565 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00583 * 0.02562 * 23 17 16 37 37 H 1.09001 * 117.49997 * 215.00426 * 24 16 14 38 38 H 1.09001 * 117.49754 * 0.03103 * 24 16 14 39 39 H 1.08999 * 117.49872 * 359.97438 * 25 16 14 40 40 H 1.09004 * 117.50086 * 144.97798 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8069 -4.1324 0.0009 13 8 5.3727 -4.7499 -1.2395 14 6 5.6444 -6.0547 -1.3985 15 8 6.2255 -6.6610 -0.5297 16 6 5.2238 -6.7638 -2.6599 17 6 3.9269 -6.2949 -3.2675 18 6 3.5688 -4.9618 -3.1888 19 6 2.3821 -4.5300 -3.7508 20 6 1.5498 -5.4320 -4.3869 21 6 1.9050 -6.7668 -4.4613 22 17 0.8605 -7.9000 -5.2605 23 6 3.0929 -7.1985 -3.8981 24 6 6.3280 -7.2189 -3.6162 25 6 5.5644 -8.2504 -2.7818 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 5.8152 -2.1705 0.8901 30 1 5.8152 -2.1708 -0.8899 31 1 5.3311 -4.6351 0.8430 32 1 6.8897 -4.2195 0.0905 33 1 4.2189 -4.2566 -2.6922 34 1 2.1050 -3.4878 -3.6927 35 1 0.6228 -5.0944 -4.8263 36 1 3.3703 -8.2408 -3.9551 37 1 6.1164 -7.1793 -4.6847 38 1 7.3587 -7.0059 -3.3326 39 1 6.0930 -8.7155 -1.9498 40 1 4.8501 -8.8894 -3.3012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815191965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:34 Heat of formation + Delta-G solvation = -82.949632 kcal Electronic energy + Delta-G solvation = -24823.572883 eV Core-core repulsion = 21016.612980 eV Total energy + Delta-G solvation = -3806.959903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00734 -39.33720 -37.69682 -36.90138 -36.43216 -35.85190 -32.74378 -30.91419 -30.73342 -30.24777 -27.71002 -25.63989 -23.17592 -22.92780 -22.17189 -22.01583 -21.83764 -20.00741 -18.21268 -17.13153 -16.79724 -16.68732 -16.46759 -15.48099 -15.37547 -15.05108 -14.94180 -14.77718 -14.44591 -13.85678 -13.68078 -13.53939 -13.12274 -13.02744 -12.64244 -12.50330 -11.97737 -11.88082 -11.82612 -11.60852 -11.27210 -11.20874 -11.06999 -10.94598 -10.82680 -10.72735 -10.67358 -10.57664 -10.44012 -9.92100 -9.25553 -8.96792 -8.86837 -8.59277 -8.56074 -6.16280 -4.15957 1.13104 1.25809 2.02221 2.09032 2.54245 3.20046 3.27822 3.28027 3.37125 3.75429 4.13813 4.30236 4.36525 4.39157 4.47743 4.63440 4.82515 5.06197 5.11343 5.14721 5.24713 5.30764 5.32117 5.39045 5.48988 5.55902 5.62645 5.73284 5.74504 5.75785 5.88660 5.93464 6.20874 6.39131 6.49742 6.54825 6.58814 6.87600 6.90829 7.52306 7.71503 7.89767 8.57984 8.95312 9.42350 10.96520 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003952 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.993484 B = 7084.146440 C = 9354.461534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.374 6.374 11 C 0.057 3.943 12 C 0.070 3.930 13 O -0.332 6.332 14 C 0.504 3.496 15 O -0.509 6.509 16 C -0.099 4.099 17 C -0.049 4.049 18 C -0.088 4.088 19 C -0.093 4.093 20 C -0.107 4.107 21 C -0.038 4.038 22 Cl -0.078 7.078 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.140 4.140 26 H 0.267 0.733 27 H 0.003 0.997 28 H 0.000 1.000 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.705 -13.959 -10.072 20.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.293 6.293 11 C -0.021 4.021 12 C -0.004 4.004 13 O -0.248 6.248 14 C 0.347 3.653 15 O -0.398 6.398 16 C -0.100 4.100 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.064 4.064 22 Cl -0.050 7.050 23 C -0.129 4.129 24 C -0.172 4.172 25 C -0.176 4.176 26 H 0.077 0.923 27 H 0.021 0.979 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.485 -14.231 -9.849 20.771 hybrid contribution 0.373 1.176 0.211 1.252 sum 11.858 -13.055 -9.638 20.098 Atomic orbital electron populations 1.69875 1.06042 1.27117 1.50110 1.24753 0.94775 0.98665 0.94620 0.86882 0.80351 0.83893 0.78795 1.19885 1.20767 1.19147 1.20852 0.88101 0.95342 1.51420 0.89889 1.20636 0.96367 0.79197 0.94447 1.87988 1.16508 1.29765 1.95086 1.22406 0.86238 0.92711 1.00713 1.23256 0.99224 0.93246 0.84634 1.86579 1.73179 1.23800 1.41265 1.22122 0.75349 0.81019 0.86803 1.90647 1.39377 1.67189 1.42584 1.19606 0.96624 0.98571 0.95244 1.18587 0.93263 0.93754 0.99293 1.21698 0.97135 0.95176 0.96531 1.21336 0.93418 1.00672 0.95652 1.21177 1.00552 0.91122 0.99731 1.20752 0.93415 0.90881 1.01366 1.98355 1.66569 1.61297 1.78746 1.20744 0.93038 0.99882 0.99194 1.23225 0.95624 1.00766 0.97568 1.23286 1.02557 0.88872 1.02892 0.92320 0.97906 0.98206 0.91758 0.92999 0.90200 0.90201 0.82808 0.83973 0.84866 0.85037 0.86872 0.87528 0.86656 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.91 9.99 -34.44 -0.34 -15.25 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.17 4.08 4.76 36.01 0.17 4.25 16 10 O -0.37 -8.25 10.30 -38.80 -0.40 -8.65 16 11 C 0.06 0.92 6.33 37.16 0.24 1.15 16 12 C 0.07 1.01 5.84 37.16 0.22 1.23 16 13 O -0.33 -5.10 6.87 -42.00 -0.29 -5.39 16 14 C 0.50 7.31 7.46 36.00 0.27 7.57 16 15 O -0.51 -8.16 16.01 -18.75 -0.30 -8.46 16 16 C -0.10 -1.17 2.50 -156.82 -0.39 -1.56 16 17 C -0.05 -0.63 5.44 -104.63 -0.57 -1.19 16 18 C -0.09 -1.29 9.08 -39.58 -0.36 -1.65 16 19 C -0.09 -1.34 10.05 -39.59 -0.40 -1.74 16 20 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 21 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 22 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.39 16 23 C -0.11 -1.30 9.17 -39.55 -0.36 -1.66 16 24 C -0.13 -1.14 9.94 -26.69 -0.27 -1.41 16 25 C -0.14 -1.25 9.38 -26.70 -0.25 -1.50 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.00 0.08 7.20 -51.93 -0.37 -0.30 16 28 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.15 2.42 5.30 -52.49 -0.28 2.14 16 34 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 1.25 5.93 -52.48 -0.31 0.94 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 40 H 0.11 0.82 6.08 -51.93 -0.32 0.50 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -32.17 356.93 -8.83 -41.01 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.04 Total: 0.87 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.78 Total: -12.27 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.99 Total: -22.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.17 -8.83 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.944 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds