Wall clock time and date at job start Tue Mar 31 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99966 * 2 1 4 4 H 1.48498 * 109.47187 * 270.00080 * 3 2 1 5 5 H 1.48502 * 109.47266 * 30.00043 * 3 2 1 6 6 H 1.48505 * 109.47295 * 150.00183 * 3 2 1 7 7 C 1.37876 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00249 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99703 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99975 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47065 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47327 * 65.00003 * 12 11 10 14 14 C 1.34222 * 117.00469 * 179.97438 * 13 12 11 15 15 O 1.20830 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00563 * 179.97438 * 14 13 12 17 17 C 1.50702 * 115.54741 * 325.58817 * 16 14 13 18 18 C 1.38263 * 119.99356 * 34.40790 * 17 16 14 19 19 C 1.38227 * 120.02488 * 179.72422 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.00857 * 180.02562 * 21 20 19 23 23 C 1.38190 * 119.99478 * 214.69222 * 17 16 14 24 24 C 1.52994 * 117.50011 * 111.24958 * 16 14 13 25 25 C 1.52992 * 117.50281 * 179.91569 * 16 14 13 26 26 H 0.97002 * 119.99949 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47082 * 60.00286 * 9 7 2 28 28 H 1.09000 * 109.47575 * 300.00117 * 9 7 2 29 29 H 1.09004 * 109.47392 * 59.99527 * 11 10 9 30 30 H 1.08994 * 109.47242 * 299.99515 * 11 10 9 31 31 H 1.09002 * 109.47746 * 304.99879 * 12 11 10 32 32 H 1.09005 * 109.47240 * 185.00022 * 12 11 10 33 33 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 34 34 H 1.08001 * 119.98919 * 180.25954 * 19 18 17 35 35 H 1.07993 * 120.00565 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.00583 * 0.02562 * 23 17 16 37 37 H 1.09001 * 117.49997 * 215.00426 * 24 16 14 38 38 H 1.09001 * 117.49754 * 0.03103 * 24 16 14 39 39 H 1.08999 * 117.49872 * 359.97438 * 25 16 14 40 40 H 1.09004 * 117.50086 * 144.97798 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6542 0.0001 12 6 5.8069 -4.1324 0.0009 13 8 5.3727 -4.7499 -1.2395 14 6 5.6444 -6.0547 -1.3985 15 8 6.2255 -6.6610 -0.5297 16 6 5.2238 -6.7638 -2.6599 17 6 3.9269 -6.2949 -3.2675 18 6 3.5688 -4.9618 -3.1888 19 6 2.3821 -4.5300 -3.7508 20 6 1.5498 -5.4320 -4.3869 21 6 1.9050 -6.7668 -4.4613 22 17 0.8605 -7.9000 -5.2605 23 6 3.0929 -7.1985 -3.8981 24 6 6.3280 -7.2189 -3.6162 25 6 5.5644 -8.2504 -2.7818 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 5.8152 -2.1705 0.8901 30 1 5.8152 -2.1708 -0.8899 31 1 5.3311 -4.6351 0.8430 32 1 6.8897 -4.2195 0.0905 33 1 4.2189 -4.2566 -2.6922 34 1 2.1050 -3.4878 -3.6927 35 1 0.6228 -5.0944 -4.8263 36 1 3.3703 -8.2408 -3.9551 37 1 6.1164 -7.1793 -4.6847 38 1 7.3587 -7.0059 -3.3326 39 1 6.0930 -8.7155 -1.9498 40 1 4.8501 -8.8894 -3.3012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815191965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:34 Heat of formation + Delta-G solvation = -100.530227 kcal Electronic energy + Delta-G solvation = -24824.335234 eV Core-core repulsion = 21016.612980 eV Total energy + Delta-G solvation = -3807.722254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.05503 -40.38485 -38.96725 -38.15348 -37.51459 -36.90739 -34.87928 -32.10947 -31.73545 -31.51459 -29.61798 -26.66796 -24.18998 -23.97781 -23.84652 -23.14329 -23.02643 -21.03987 -19.26438 -19.08252 -18.03095 -17.87388 -17.64324 -17.00932 -16.52052 -16.38096 -16.29813 -15.97638 -15.62374 -15.12043 -14.75871 -14.71199 -14.52439 -14.30605 -14.16184 -13.77630 -13.43473 -13.00975 -12.78954 -12.75996 -12.65580 -12.54512 -12.32766 -12.12501 -12.03525 -11.87437 -11.74894 -11.73424 -11.59278 -11.52281 -11.34114 -10.92269 -10.40235 -9.87898 -9.60643 -8.35672 -6.43666 0.10782 0.22188 0.95938 1.09616 1.34527 1.37339 1.47763 1.52000 2.30120 2.47503 2.80927 2.94854 2.97391 3.25908 3.47836 3.54933 3.84071 3.90002 3.90700 4.09837 4.15376 4.28445 4.35747 4.43113 4.47850 4.52545 4.60398 4.64745 4.69846 4.74092 4.86067 4.94733 5.00582 5.11680 5.17747 5.28227 5.43863 5.47246 5.52250 5.79563 5.92390 6.58859 6.61231 6.72276 7.20477 8.81368 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003952 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.993484 B = 7084.146440 C = 9354.461534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.242 1.242 7 C -0.543 4.543 8 H 0.028 0.972 9 C 0.179 3.821 10 O -0.404 6.404 11 C 0.050 3.950 12 C 0.069 3.931 13 O -0.346 6.346 14 C 0.500 3.500 15 O -0.530 6.530 16 C -0.128 4.128 17 C -0.044 4.044 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.040 4.040 22 Cl -0.064 7.064 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.126 4.126 26 H 0.272 0.728 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -14.306 -10.989 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.580 4.580 8 H 0.046 0.954 9 C 0.104 3.896 10 O -0.324 6.324 11 C -0.026 4.026 12 C -0.004 4.004 13 O -0.262 6.262 14 C 0.345 3.655 15 O -0.420 6.420 16 C -0.129 4.129 17 C -0.044 4.044 18 C -0.126 4.126 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.067 4.067 22 Cl -0.035 7.035 23 C -0.122 4.122 24 C -0.149 4.149 25 C -0.163 4.163 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.948 -14.601 -10.771 22.885 hybrid contribution -0.427 1.137 0.493 1.311 sum 13.521 -13.464 -10.278 21.673 Atomic orbital electron populations 1.70042 1.08316 1.28695 1.51123 1.25809 0.95721 1.03290 0.93488 0.85646 0.79552 0.77561 0.79816 1.18336 1.20191 1.16580 1.21118 0.90962 0.93677 1.52270 0.95403 1.20346 0.93283 0.80624 0.95354 1.87937 1.20505 1.28585 1.95364 1.22746 0.82958 0.94267 1.02644 1.23302 1.00884 0.92105 0.84096 1.86608 1.73486 1.24646 1.41445 1.22679 0.74743 0.80561 0.87494 1.90625 1.40596 1.67373 1.43442 1.19702 0.97446 1.00451 0.95348 1.18672 0.93942 0.92969 0.98849 1.21659 0.97234 0.96197 0.97480 1.21289 0.94264 1.00438 0.97047 1.21268 1.00707 0.91600 0.99790 1.20858 0.93885 0.90775 1.01183 1.98359 1.66193 1.60527 1.78405 1.21012 0.92202 1.00970 0.98001 1.23414 0.94983 0.98493 0.98001 1.23453 1.02560 0.87366 1.02878 0.91889 0.96695 0.96721 0.89285 0.91366 0.91626 0.86969 0.84393 0.85534 0.84020 0.82161 0.84908 0.86679 0.86910 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.01 0.87 5.47 84.65 0.46 1.33 16 3 Si 0.95 42.22 27.47 68.60 1.88 44.11 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 7 C -0.54 -32.42 9.99 25.60 0.26 -32.17 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.18 8.65 4.76 71.24 0.34 8.99 16 10 O -0.40 -18.12 10.30 -145.57 -1.50 -19.62 16 11 C 0.05 1.56 6.33 71.98 0.46 2.02 16 12 C 0.07 1.97 5.84 71.98 0.42 2.39 16 13 O -0.35 -10.71 6.87 -48.69 -0.33 -11.04 16 14 C 0.50 14.31 7.46 71.24 0.53 14.84 16 15 O -0.53 -16.66 16.01 21.95 0.35 -16.31 16 16 C -0.13 -2.84 2.50 -53.68 -0.13 -2.97 16 17 C -0.04 -1.11 5.44 -19.87 -0.11 -1.21 16 18 C -0.11 -3.31 9.08 22.27 0.20 -3.11 16 19 C -0.11 -3.48 10.05 22.27 0.22 -3.25 16 20 C -0.12 -3.12 9.83 22.29 0.22 -2.90 16 21 C -0.04 -0.98 6.32 22.32 0.14 -0.83 16 22 Cl -0.06 -1.34 28.96 -2.72 -0.08 -1.42 16 23 C -0.10 -2.27 9.17 22.29 0.20 -2.07 16 24 C -0.11 -1.58 9.94 30.62 0.30 -1.27 16 25 C -0.13 -1.91 9.38 30.62 0.29 -1.62 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.02 0.70 7.20 -2.39 -0.02 0.68 16 28 H 0.02 0.68 7.57 -2.39 -0.02 0.66 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 32 H 0.11 2.44 8.13 -2.38 -0.02 2.42 16 33 H 0.14 4.62 5.30 -2.91 -0.02 4.60 16 34 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.16 2.50 5.93 -2.91 -0.02 2.48 16 37 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.11 1.82 7.67 -2.39 -0.02 1.80 16 40 H 0.14 1.41 6.08 -2.38 -0.01 1.40 16 Total: -1.00 -73.16 356.93 5.43 -67.72 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.01 Total: 16.82 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 3.81 Total: -21.83 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.30 Total: -58.43 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -1.48 Total: -46.97 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -73.16 5.43 -67.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.807 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds