Wall clock time and date at job start Tue Mar 31 2020 14:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.42907 * 113.99743 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46664 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47267 * 65.00292 * 12 11 10 14 14 C 1.34235 * 116.99901 * 179.97438 * 13 12 11 15 15 O 1.20820 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99930 * 179.97438 * 14 13 12 17 17 H 1.09003 * 115.55037 * 325.67007 * 16 14 13 18 18 C 1.53001 * 117.49759 * 111.37537 * 16 14 13 19 19 C 1.52992 * 117.49964 * 179.97438 * 16 14 13 20 20 H 1.09001 * 117.49951 * 145.01594 * 19 16 14 21 21 C 1.50705 * 117.50077 * 0.02569 * 19 16 14 22 22 C 1.38253 * 119.99573 * 119.99629 * 21 19 16 23 23 C 1.38224 * 120.02978 * 179.97438 * 22 21 19 24 24 C 1.38239 * 120.00777 * 0.02710 * 23 22 21 25 25 C 1.38325 * 119.98721 * 359.97438 * 24 23 22 26 26 Cl 1.73601 * 120.01079 * 180.02562 * 25 24 23 27 27 C 1.38193 * 119.99115 * 299.72506 * 21 19 16 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 30 30 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 31 31 H 1.09001 * 109.46908 * 299.99630 * 11 10 9 32 32 H 1.09000 * 109.47082 * 59.99894 * 11 10 9 33 33 H 1.08999 * 109.46685 * 184.99969 * 12 11 10 34 34 H 1.09002 * 109.47410 * 304.99801 * 12 11 10 35 35 H 1.09002 * 117.49524 * 214.97805 * 18 16 14 36 36 H 1.08998 * 117.49926 * 0.02562 * 18 16 14 37 37 H 1.08004 * 119.98781 * 359.97438 * 22 21 19 38 38 H 1.07997 * 119.99731 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.00147 * 180.02562 * 24 23 22 40 40 H 1.08008 * 120.00757 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 0.0000 12 6 2.6477 -5.9563 -0.0006 13 8 3.3999 -5.8886 1.2395 14 6 4.3941 -6.7764 1.3984 15 8 4.6278 -7.5836 0.5303 16 6 5.2188 -6.7663 2.6597 17 1 5.3931 -5.7844 3.0996 18 6 5.0632 -7.9513 3.6150 19 6 6.3368 -7.8036 2.7810 20 1 7.2470 -7.5042 3.3007 21 6 6.5296 -8.7569 1.6298 22 6 7.7354 -8.7901 0.9543 23 6 7.9131 -9.6645 -0.1013 24 6 6.8848 -10.5061 -0.4826 25 6 5.6781 -10.4733 0.1929 26 17 4.3866 -11.5303 -0.2850 27 6 5.5028 -9.6017 1.2532 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 0.8898 30 1 0.6239 -2.5567 -0.8903 31 1 0.9450 -4.9822 0.8903 32 1 0.9443 -4.9827 -0.8897 33 1 2.1816 -6.9375 -0.0898 34 1 3.3207 -5.7958 -0.8430 35 1 5.1351 -7.7490 4.6836 36 1 4.3647 -8.7384 3.3310 37 1 8.5389 -8.1325 1.2516 38 1 8.8551 -9.6897 -0.6289 39 1 7.0239 -11.1896 -1.3071 40 1 4.5622 -9.5785 1.7835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815203459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:43 Heat of formation + Delta-G solvation = -83.433627 kcal Electronic energy + Delta-G solvation = -24164.649121 eV Core-core repulsion = 20357.668231 eV Total energy + Delta-G solvation = -3806.980890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97432 -39.41558 -37.57217 -36.75308 -36.34511 -35.75894 -32.78170 -31.00171 -30.86052 -30.10733 -27.01638 -25.33688 -24.26585 -22.74177 -22.44131 -22.02311 -21.12301 -20.13022 -18.19434 -17.24285 -16.49499 -16.47535 -16.08724 -15.73249 -15.45916 -15.28523 -14.84180 -14.54542 -14.32771 -13.96038 -13.90729 -13.73909 -13.20064 -12.91631 -12.52019 -12.32430 -12.07906 -11.88426 -11.76120 -11.49887 -11.41318 -11.02896 -10.96767 -10.91445 -10.88130 -10.84317 -10.72343 -10.38242 -10.34336 -10.05936 -9.14090 -8.88919 -8.76574 -8.60960 -8.22361 -6.13029 -4.14726 1.00120 1.15235 2.03829 2.14809 2.69051 3.29326 3.29747 3.34218 3.39745 3.70512 4.14897 4.31575 4.40159 4.47065 4.58348 4.71133 4.78061 4.86669 4.98835 5.05843 5.19017 5.23130 5.23579 5.35980 5.43208 5.46486 5.59094 5.63908 5.73986 5.86286 5.92861 6.08630 6.10462 6.16889 6.32632 6.61626 6.65534 7.04422 7.38741 7.76936 7.87966 8.11506 8.51435 8.97864 9.50044 10.98575 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002420 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.974559 B =11566.472199 C =12105.466165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.271 1.271 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.337 6.337 14 C 0.483 3.517 15 O -0.498 6.498 16 C -0.153 4.153 17 H 0.144 0.856 18 C -0.144 4.144 19 C -0.084 4.084 20 H 0.131 0.869 21 C -0.040 4.040 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.037 4.037 26 Cl -0.080 7.080 27 C -0.049 4.049 28 H 0.264 0.736 29 H 0.007 0.993 30 H 0.006 0.994 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.400 -22.827 5.438 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.252 6.252 14 C 0.326 3.674 15 O -0.386 6.386 16 C -0.172 4.172 17 H 0.162 0.838 18 C -0.180 4.180 19 C -0.102 4.102 20 H 0.149 0.851 21 C -0.040 4.040 22 C -0.123 4.123 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.063 4.063 26 Cl -0.051 7.051 27 C -0.068 4.068 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.347 -22.981 5.097 27.060 hybrid contribution -0.276 0.917 -0.311 1.007 sum 13.072 -22.064 4.786 26.088 Atomic orbital electron populations 1.69964 1.06111 1.27204 1.50526 1.24954 0.94994 0.99461 0.95108 0.86322 0.79666 0.82172 0.78259 1.20421 1.19608 1.21056 1.21048 0.94095 0.89299 1.50868 0.91519 1.20235 0.88749 0.83502 0.95496 1.87919 1.35315 1.12612 1.95223 1.22321 0.93268 0.85483 1.00524 1.23200 0.93592 0.98697 0.84221 1.86581 1.43217 1.53957 1.41492 1.22534 0.78954 0.78166 0.87715 1.90731 1.67533 1.37276 1.43105 1.21874 1.00956 0.98421 0.95987 0.83839 1.23234 0.99255 0.97761 0.97786 1.21186 0.94108 0.97290 0.97587 0.85100 1.18783 0.93756 0.95452 0.96019 1.20940 0.96845 0.98702 0.95835 1.20958 0.98769 0.96182 0.97475 1.20967 0.91901 1.00234 0.99920 1.20720 0.90166 0.96729 0.98702 1.98357 1.50141 1.65046 1.91536 1.20626 0.98274 0.92723 0.95134 0.92620 0.97511 0.97607 0.93218 0.91979 0.90510 0.90524 0.86394 0.87704 0.85659 0.85366 0.85442 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.35 5.69 36.00 0.20 5.55 16 10 O -0.39 -9.57 10.30 -38.80 -0.40 -9.97 16 11 C 0.06 1.14 6.33 37.16 0.24 1.38 16 12 C 0.08 1.23 5.84 37.16 0.22 1.45 16 13 O -0.34 -5.61 10.19 -42.04 -0.43 -6.04 16 14 C 0.48 6.88 7.61 36.01 0.27 7.15 16 15 O -0.50 -7.66 11.48 -18.75 -0.22 -7.87 16 16 C -0.15 -1.58 6.30 -91.78 -0.58 -2.16 16 17 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.14 -1.09 9.57 -26.76 -0.26 -1.35 16 19 C -0.08 -0.70 6.04 -91.80 -0.55 -1.26 16 20 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.04 -0.41 4.36 -104.63 -0.46 -0.87 16 22 C -0.11 -1.00 9.74 -39.58 -0.39 -1.39 16 23 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 24 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 25 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 26 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 27 C -0.05 -0.56 5.98 -39.55 -0.24 -0.80 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.83 6.17 -51.93 -0.32 0.51 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.38 5.79 -52.48 -0.30 1.07 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -33.68 359.15 -9.65 -43.33 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.24 Total: -3.13 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.99 Total: -10.02 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.04 Total: -23.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.68 -9.65 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815203459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.104 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds