Wall clock time and date at job start Tue Mar 31 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.42907 * 113.99743 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46664 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47267 * 65.00292 * 12 11 10 14 14 C 1.34235 * 116.99901 * 179.97438 * 13 12 11 15 15 O 1.20820 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99930 * 179.97438 * 14 13 12 17 17 H 1.09003 * 115.55037 * 325.67007 * 16 14 13 18 18 C 1.53001 * 117.49759 * 111.37537 * 16 14 13 19 19 C 1.52992 * 117.49964 * 179.97438 * 16 14 13 20 20 H 1.09001 * 117.49951 * 145.01594 * 19 16 14 21 21 C 1.50705 * 117.50077 * 0.02569 * 19 16 14 22 22 C 1.38253 * 119.99573 * 119.99629 * 21 19 16 23 23 C 1.38224 * 120.02978 * 179.97438 * 22 21 19 24 24 C 1.38239 * 120.00777 * 0.02710 * 23 22 21 25 25 C 1.38325 * 119.98721 * 359.97438 * 24 23 22 26 26 Cl 1.73601 * 120.01079 * 180.02562 * 25 24 23 27 27 C 1.38193 * 119.99115 * 299.72506 * 21 19 16 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 30 30 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 31 31 H 1.09001 * 109.46908 * 299.99630 * 11 10 9 32 32 H 1.09000 * 109.47082 * 59.99894 * 11 10 9 33 33 H 1.08999 * 109.46685 * 184.99969 * 12 11 10 34 34 H 1.09002 * 109.47410 * 304.99801 * 12 11 10 35 35 H 1.09002 * 117.49524 * 214.97805 * 18 16 14 36 36 H 1.08998 * 117.49926 * 0.02562 * 18 16 14 37 37 H 1.08004 * 119.98781 * 359.97438 * 22 21 19 38 38 H 1.07997 * 119.99731 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.00147 * 180.02562 * 24 23 22 40 40 H 1.08008 * 120.00757 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5854 -0.0005 11 6 1.5648 -4.8755 0.0000 12 6 2.6477 -5.9563 -0.0006 13 8 3.3999 -5.8886 1.2395 14 6 4.3941 -6.7764 1.3984 15 8 4.6278 -7.5836 0.5303 16 6 5.2188 -6.7663 2.6597 17 1 5.3931 -5.7844 3.0996 18 6 5.0632 -7.9513 3.6150 19 6 6.3368 -7.8036 2.7810 20 1 7.2470 -7.5042 3.3007 21 6 6.5296 -8.7569 1.6298 22 6 7.7354 -8.7901 0.9543 23 6 7.9131 -9.6645 -0.1013 24 6 6.8848 -10.5061 -0.4826 25 6 5.6781 -10.4733 0.1929 26 17 4.3866 -11.5303 -0.2850 27 6 5.5028 -9.6017 1.2532 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 0.8898 30 1 0.6239 -2.5567 -0.8903 31 1 0.9450 -4.9822 0.8903 32 1 0.9443 -4.9827 -0.8897 33 1 2.1816 -6.9375 -0.0898 34 1 3.3207 -5.7958 -0.8430 35 1 5.1351 -7.7490 4.6836 36 1 4.3647 -8.7384 3.3310 37 1 8.5389 -8.1325 1.2516 38 1 8.8551 -9.6897 -0.6289 39 1 7.0239 -11.1896 -1.3071 40 1 4.5622 -9.5785 1.7835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815203459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:42 Heat of formation + Delta-G solvation = -101.543455 kcal Electronic energy + Delta-G solvation = -24165.434422 eV Core-core repulsion = 20357.668231 eV Total energy + Delta-G solvation = -3807.766191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94138 -40.33097 -38.83848 -38.08041 -37.28698 -36.85186 -34.96212 -31.95570 -31.61368 -31.45777 -29.09356 -26.35236 -24.96936 -24.56369 -23.57553 -23.33588 -21.95742 -21.03102 -19.13480 -18.71036 -18.21297 -17.87596 -17.05739 -17.00107 -16.61540 -16.40256 -16.20616 -16.12982 -15.50735 -15.22311 -14.67261 -14.62929 -14.49787 -14.20967 -13.88564 -13.65858 -13.19650 -13.01257 -12.93022 -12.80804 -12.68846 -12.53264 -12.43015 -12.18715 -12.01764 -11.82661 -11.71417 -11.65671 -11.56329 -11.33528 -11.28937 -10.91259 -10.30080 -9.55631 -9.39844 -8.33705 -6.46212 0.23516 0.37599 1.13811 1.21598 1.39905 1.42802 1.54851 1.64431 2.33692 2.54511 2.99092 3.00243 3.03603 3.42147 3.68314 3.74422 3.81852 3.90634 3.93827 4.06975 4.16141 4.29184 4.37620 4.38366 4.46886 4.51608 4.64047 4.70768 4.82741 4.84239 4.90458 4.98780 5.06833 5.14960 5.34267 5.43985 5.47577 5.52785 5.59113 5.93137 5.94134 6.47467 6.75119 6.78509 7.25456 8.78629 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.002420 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.974559 B =11566.472199 C =12105.466165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.083 3.917 13 O -0.359 6.359 14 C 0.476 3.524 15 O -0.513 6.513 16 C -0.173 4.173 17 H 0.154 0.846 18 C -0.127 4.127 19 C -0.075 4.075 20 H 0.163 0.837 21 C -0.053 4.053 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.057 4.057 26 Cl -0.087 7.087 27 C -0.064 4.064 28 H 0.272 0.728 29 H -0.010 1.010 30 H -0.009 1.009 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.139 0.861 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.294 -22.404 6.331 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.010 3.990 13 O -0.276 6.276 14 C 0.321 3.679 15 O -0.402 6.402 16 C -0.192 4.192 17 H 0.172 0.828 18 C -0.163 4.163 19 C -0.093 4.093 20 H 0.180 0.820 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.083 4.083 26 Cl -0.058 7.058 27 C -0.083 4.083 28 H 0.080 0.920 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.166 0.834 36 H 0.116 0.884 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.241 -22.592 5.995 27.904 hybrid contribution -0.872 0.661 -0.605 1.251 sum 14.369 -21.931 5.389 26.767 Atomic orbital electron populations 1.70064 1.07727 1.28739 1.50351 1.25964 0.95994 1.03382 0.93820 0.85174 0.78334 0.76929 0.78935 1.19118 1.18955 1.19828 1.21379 0.94085 0.90883 1.52498 0.92155 1.19875 0.88571 0.84408 0.93835 1.87863 1.35529 1.14171 1.95316 1.22631 0.94528 0.83429 1.01667 1.23073 0.92988 0.98788 0.84199 1.86580 1.44285 1.55287 1.41417 1.23351 0.78407 0.77238 0.88916 1.90728 1.67817 1.37676 1.44020 1.22000 1.02015 1.00004 0.95178 0.82828 1.23407 0.98410 0.95622 0.98891 1.21403 0.95225 0.95587 0.97055 0.81985 1.19099 0.93839 0.95602 0.96839 1.21323 0.97204 0.98826 0.95531 1.21333 0.99447 0.95409 0.97380 1.21232 0.91800 1.00854 1.00282 1.20956 0.90645 0.97261 0.99434 1.98344 1.50562 1.65271 1.91612 1.20712 0.98588 0.93484 0.95495 0.91952 0.99274 0.99109 0.92579 0.90286 0.87867 0.91447 0.83358 0.88397 0.83238 0.82801 0.84273 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -33.17 9.43 25.60 0.24 -32.93 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.79 5.69 71.23 0.41 12.19 16 10 O -0.41 -20.48 10.30 -145.57 -1.50 -21.98 16 11 C 0.05 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.68 5.84 71.98 0.42 3.10 16 13 O -0.36 -12.03 10.19 -48.82 -0.50 -12.53 16 14 C 0.48 13.44 7.61 71.24 0.54 13.98 16 15 O -0.51 -15.76 11.48 21.98 0.25 -15.51 16 16 C -0.17 -3.31 6.30 -11.54 -0.07 -3.38 16 17 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 18 C -0.13 -1.65 9.57 30.58 0.29 -1.36 16 19 C -0.08 -1.08 6.04 -11.56 -0.07 -1.15 16 20 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.05 -1.04 4.36 -19.87 -0.09 -1.12 16 22 C -0.11 -1.89 9.74 22.27 0.22 -1.67 16 23 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 24 C -0.12 -2.43 9.83 22.29 0.22 -2.21 16 25 C -0.06 -1.30 6.32 22.32 0.14 -1.16 16 26 Cl -0.09 -1.96 28.96 -2.72 -0.08 -2.04 16 27 C -0.06 -1.45 5.98 22.29 0.13 -1.32 16 28 H 0.27 15.07 8.31 -92.70 -0.77 14.29 16 29 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.10 2.76 8.13 -2.39 -0.02 2.74 16 34 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 35 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.44 6.17 -2.39 -0.01 1.43 16 37 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.12 2.66 5.79 -2.91 -0.02 2.64 16 Total: -1.00 -73.49 359.15 5.06 -68.43 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.05 Total: 8.22 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.53 Total: -15.41 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -1.74 Total: -50.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -73.49 5.06 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815203459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.114 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds