Wall clock time and date at job start Tue Mar 31 2020 14:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 179.97438 * 9 7 2 11 11 C 1.42899 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46889 * 180.02562 * 11 10 9 13 13 O 1.45200 * 109.47458 * 65.00274 * 12 11 10 14 14 C 1.34222 * 117.00184 * 180.02562 * 13 12 11 15 15 O 1.20829 * 120.00088 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00215 * 179.97438 * 14 13 12 17 17 H 1.09003 * 115.54706 * 325.72127 * 16 14 13 18 18 C 1.53007 * 117.49785 * 111.38904 * 16 14 13 19 19 C 1.52997 * 117.50221 * 180.02562 * 16 14 13 20 20 H 1.08999 * 117.49760 * 0.02562 * 19 16 14 21 21 C 1.50700 * 117.50011 * 145.02230 * 19 16 14 22 22 C 1.38267 * 119.99197 * 240.00189 * 21 19 16 23 23 C 1.38211 * 120.02720 * 180.02562 * 22 21 19 24 24 C 1.38238 * 120.01366 * 359.97438 * 23 22 21 25 25 C 1.38335 * 119.98328 * 0.02562 * 24 23 22 26 26 Cl 1.73600 * 120.00871 * 179.97438 * 25 24 23 27 27 C 1.38183 * 119.99495 * 59.72745 * 21 19 16 28 28 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 30 30 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 31 31 H 1.08997 * 109.47442 * 300.00036 * 11 10 9 32 32 H 1.08997 * 109.47171 * 60.00232 * 11 10 9 33 33 H 1.09002 * 109.46929 * 185.00104 * 12 11 10 34 34 H 1.09002 * 109.46948 * 304.99600 * 12 11 10 35 35 H 1.08995 * 117.49506 * 214.97954 * 18 16 14 36 36 H 1.08993 * 117.50022 * 359.97438 * 18 16 14 37 37 H 1.07998 * 119.98849 * 359.97438 * 22 21 19 38 38 H 1.08000 * 119.99988 * 180.02562 * 23 22 21 39 39 H 1.08003 * 120.01203 * 179.97438 * 24 23 22 40 40 H 1.08011 * 120.00544 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1800 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0011 12 6 2.6485 -5.9560 0.0017 13 8 3.3997 -5.8878 1.2424 14 6 4.3945 -6.7747 1.4020 15 8 4.6295 -7.5816 0.5340 16 6 5.2182 -6.7640 2.6639 17 1 5.3906 -5.7820 3.1045 18 6 5.0632 -7.9495 3.6188 19 6 6.3379 -7.7996 2.7855 20 1 6.4790 -8.4884 1.9526 21 6 7.5949 -7.3841 3.5054 22 6 8.8091 -7.4051 2.8442 23 6 9.9625 -7.0246 3.5038 24 6 9.9028 -6.6223 4.8250 25 6 8.6883 -6.6011 5.4870 26 17 8.6126 -6.0966 7.1464 27 6 7.5331 -6.9767 4.8243 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5570 -0.8897 30 1 0.6243 -2.5567 0.8903 31 1 0.9456 -4.9822 0.8913 32 1 0.9451 -4.9827 -0.8886 33 1 2.1826 -6.9374 -0.0874 34 1 3.3221 -5.7958 -0.8402 35 1 5.1340 -7.7473 4.6875 36 1 4.3651 -8.7367 3.3346 37 1 8.8564 -7.7197 1.8121 38 1 10.9106 -7.0408 2.9869 39 1 10.8042 -6.3254 5.3406 40 1 6.5840 -6.9565 5.3395 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815203460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:45 Heat of formation + Delta-G solvation = -112.937147 kcal Electronic energy + Delta-G solvation = -23340.090200 eV Core-core repulsion = 19531.829941 eV Total energy + Delta-G solvation = -3808.260259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81995 -40.58075 -38.90647 -38.13388 -37.42241 -36.93246 -34.96016 -31.99918 -31.72191 -31.53094 -29.09247 -26.45495 -25.00692 -24.56133 -23.59223 -23.34754 -21.92374 -21.16149 -19.17123 -18.70470 -18.16111 -17.91909 -17.68107 -17.04010 -16.46978 -16.46343 -16.31236 -16.17253 -15.47642 -15.28827 -14.75371 -14.59831 -14.51474 -14.22327 -13.83941 -13.61451 -13.20556 -13.06699 -12.93408 -12.81766 -12.70546 -12.68981 -12.45851 -12.28478 -12.03169 -11.91306 -11.76889 -11.73604 -11.62964 -11.48291 -11.29544 -10.90838 -10.28893 -9.86948 -9.61329 -8.33571 -6.45844 0.09550 0.22642 0.99572 1.13936 1.39769 1.42357 1.54538 1.56229 2.33666 2.43853 2.88767 3.00372 3.04702 3.37404 3.51922 3.65032 3.76533 3.90075 3.92163 4.06776 4.09049 4.19103 4.27672 4.39032 4.43107 4.48241 4.56422 4.64965 4.73840 4.83811 4.85221 4.91917 5.01862 5.16043 5.23819 5.35785 5.37280 5.50223 5.52987 5.80046 5.93691 6.48132 6.65094 6.78112 7.25833 8.78659 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010758 B = 0.002409 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.138978 B =11618.829194 C =13262.847732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.053 3.947 12 C 0.078 3.922 13 O -0.356 6.356 14 C 0.491 3.509 15 O -0.535 6.535 16 C -0.171 4.171 17 H 0.140 0.860 18 C -0.120 4.120 19 C -0.074 4.074 20 H 0.130 0.870 21 C -0.052 4.052 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.045 4.045 26 Cl -0.074 7.074 27 C -0.116 4.116 28 H 0.272 0.728 29 H -0.007 1.007 30 H -0.010 1.010 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.807 -19.216 10.890 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.024 4.024 12 C 0.004 3.996 13 O -0.272 6.272 14 C 0.337 3.663 15 O -0.425 6.425 16 C -0.190 4.190 17 H 0.157 0.843 18 C -0.156 4.156 19 C -0.092 4.092 20 H 0.148 0.852 21 C -0.053 4.053 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.136 4.136 25 C -0.072 4.072 26 Cl -0.045 7.045 27 C -0.134 4.134 28 H 0.080 0.920 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.160 0.840 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 17.865 -19.251 10.762 28.383 hybrid contribution -0.460 0.931 -0.196 1.056 sum 17.405 -18.321 10.566 27.390 Atomic orbital electron populations 1.70052 1.07665 1.28725 1.50369 1.25937 0.95985 1.03308 0.93855 0.85197 0.78365 0.77069 0.78878 1.19221 1.19765 1.19026 1.21383 0.94061 0.90964 1.52457 0.92250 1.19874 0.88548 0.84356 0.93909 1.87864 1.35573 1.14241 1.95335 1.22659 0.94521 0.83330 1.01890 1.23223 0.93126 0.99272 0.83931 1.86583 1.43958 1.54910 1.41735 1.23020 0.78199 0.76936 0.88183 1.90616 1.68540 1.39201 1.44179 1.21928 1.01904 0.99723 0.95401 0.84264 1.23422 0.98100 0.95863 0.98233 1.21145 0.87117 0.99166 1.01807 0.85241 1.19039 0.93771 0.99486 0.92969 1.21395 0.91757 0.98780 1.00987 1.21426 0.99635 0.97422 0.93660 1.21379 0.96861 0.99916 0.95398 1.21047 0.95828 1.03773 0.86549 1.98380 1.98779 1.89706 1.17651 1.21099 0.98287 0.99616 0.94426 0.91953 0.98945 0.99246 0.92510 0.89895 0.87112 0.91050 0.84702 0.86482 0.84008 0.82364 0.83395 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 2 C 0.01 0.45 5.46 84.65 0.46 0.92 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -33.19 9.43 25.60 0.24 -32.95 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.72 5.69 71.24 0.41 12.12 16 10 O -0.41 -20.35 10.30 -145.57 -1.50 -21.84 16 11 C 0.05 1.92 6.33 71.98 0.46 2.38 16 12 C 0.08 2.42 5.84 71.98 0.42 2.84 16 13 O -0.36 -11.89 10.19 -48.70 -0.50 -12.39 16 14 C 0.49 14.15 7.74 71.24 0.55 14.70 16 15 O -0.53 -16.85 16.01 21.95 0.35 -16.50 16 16 C -0.17 -3.63 5.93 -11.54 -0.07 -3.70 16 17 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 18 C -0.12 -1.74 9.56 30.61 0.29 -1.45 16 19 C -0.07 -1.27 5.55 -11.53 -0.06 -1.33 16 20 H 0.13 2.30 7.67 -2.39 -0.02 2.28 16 21 C -0.05 -0.85 5.61 -19.87 -0.11 -0.96 16 22 C -0.11 -1.62 9.74 22.27 0.22 -1.40 16 23 C -0.10 -1.28 10.05 22.26 0.22 -1.05 16 24 C -0.12 -1.61 9.83 22.29 0.22 -1.39 16 25 C -0.05 -0.74 6.32 22.32 0.14 -0.60 16 26 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.29 16 27 C -0.12 -1.86 9.08 22.29 0.20 -1.66 16 28 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 29 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.11 2.71 8.13 -2.39 -0.02 2.70 16 34 H 0.07 2.30 8.13 -2.39 -0.02 2.28 16 35 H 0.14 1.40 6.18 -2.39 -0.01 1.38 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.95 6.03 -2.91 -0.02 1.94 16 Total: -1.00 -71.90 367.06 5.23 -66.68 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.05 Total: 7.74 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.59 Total: -13.53 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -1.64 Total: -50.73 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -71.90 5.23 -66.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815203460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.261 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds