Wall clock time and date at job start Tue Mar 31 2020 14:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99904 * 2 1 4 4 H 1.48492 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47025 * 300.00438 * 3 2 1 6 6 H 1.48503 * 109.46882 * 59.99984 * 3 2 1 7 7 C 1.37881 * 120.00622 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99484 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99930 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47208 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47509 * 64.99624 * 12 11 10 14 14 C 1.34226 * 117.00028 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00255 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99610 * 180.02562 * 14 13 12 17 17 H 1.08993 * 115.56306 * 34.31235 * 16 14 13 18 18 C 1.53002 * 117.49365 * 248.62269 * 16 14 13 19 19 C 1.53003 * 117.49370 * 180.02562 * 16 14 13 20 20 H 1.08997 * 117.51080 * 214.96681 * 19 16 14 21 21 C 1.50692 * 117.50119 * 359.97438 * 19 16 14 22 22 C 1.38272 * 119.99271 * 240.01746 * 21 19 16 23 23 C 1.38219 * 120.02538 * 180.27934 * 22 21 19 24 24 C 1.38240 * 120.01161 * 359.44036 * 23 22 21 25 25 C 1.38321 * 119.98729 * 0.53568 * 24 23 22 26 26 Cl 1.73599 * 120.01374 * 179.76678 * 25 24 23 27 27 C 1.38194 * 119.99475 * 59.99031 * 21 19 16 28 28 H 0.96997 * 120.00582 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47157 * 60.00009 * 9 7 2 30 30 H 1.08994 * 109.47227 * 300.00038 * 9 7 2 31 31 H 1.08995 * 109.47345 * 60.00149 * 11 10 9 32 32 H 1.08997 * 109.46703 * 299.99979 * 11 10 9 33 33 H 1.09000 * 109.46708 * 304.99870 * 12 11 10 34 34 H 1.08994 * 109.47059 * 184.99996 * 12 11 10 35 35 H 1.08997 * 117.49533 * 145.02643 * 18 16 14 36 36 H 1.08999 * 117.50344 * 359.97438 * 18 16 14 37 37 H 1.08002 * 119.98328 * 359.97438 * 22 21 19 38 38 H 1.08002 * 119.99099 * 179.70395 * 23 22 21 39 39 H 1.08002 * 120.00536 * 180.25939 * 24 23 22 40 40 H 1.07993 * 120.00538 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.5653 -4.8754 -0.0024 12 6 2.6483 -5.9561 -0.0030 13 8 3.3997 -5.8892 1.2376 14 6 4.3945 -6.7763 1.3962 15 8 4.6300 -7.5818 0.5269 16 6 5.2177 -6.7675 2.6585 17 1 4.6810 -6.4983 3.5681 18 6 6.6797 -6.3309 2.5453 19 6 6.3374 -7.8033 2.7788 20 1 6.5375 -8.2159 3.7676 21 6 6.5322 -8.7544 1.6263 22 6 6.4115 -10.1172 1.8268 23 6 6.5958 -10.9905 0.7714 24 6 6.8894 -10.5013 -0.4878 25 6 7.0098 -9.1381 -0.6890 26 17 7.3845 -8.5233 -2.2687 27 6 6.8309 -8.2645 0.3691 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8896 31 1 0.9448 -4.9818 -0.8922 32 1 0.9456 -4.9830 0.8877 33 1 3.3218 -5.7950 -0.8448 34 1 2.1824 -6.9373 -0.0931 35 1 7.1049 -5.7745 3.3806 36 1 7.0463 -6.0504 1.5579 37 1 6.1781 -10.4996 2.8095 38 1 6.5061 -12.0551 0.9296 39 1 7.0292 -11.1835 -1.3132 40 1 6.9251 -7.2001 0.2126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815203462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:51 Heat of formation + Delta-G solvation = -83.264315 kcal Electronic energy + Delta-G solvation = -24230.852472 eV Core-core repulsion = 20423.878924 eV Total energy + Delta-G solvation = -3806.973548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.96589 -39.40764 -37.55704 -36.73874 -36.31136 -35.75405 -32.78097 -30.99014 -30.84684 -30.10558 -27.01565 -25.33499 -24.24189 -22.72869 -22.44182 -22.01392 -21.10318 -20.12464 -18.18016 -17.23971 -16.50710 -16.46474 -16.08812 -15.70604 -15.48447 -15.23739 -14.71516 -14.65118 -14.34559 -13.94813 -13.87748 -13.72302 -13.19718 -12.91654 -12.51217 -12.29830 -12.05332 -11.87342 -11.72011 -11.46499 -11.43639 -11.00377 -10.96411 -10.87993 -10.86789 -10.84232 -10.71609 -10.37400 -10.34038 -10.05725 -9.12502 -8.89309 -8.74801 -8.59772 -8.22454 -6.13045 -4.14645 1.00649 1.16370 2.08482 2.15812 2.68350 3.28186 3.32034 3.34636 3.41293 3.73759 4.16199 4.31685 4.42337 4.49060 4.60289 4.70911 4.79188 4.86604 4.98124 5.06358 5.21160 5.23510 5.23677 5.39534 5.44838 5.46826 5.60695 5.66157 5.76246 5.86380 5.92891 6.08667 6.12951 6.16728 6.33235 6.61728 6.66331 7.04505 7.38756 7.77285 7.88017 8.11507 8.51438 8.98319 9.50213 10.98600 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002542 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.414135 B =11013.511054 C =11360.309909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.076 3.924 13 O -0.337 6.337 14 C 0.483 3.517 15 O -0.498 6.498 16 C -0.154 4.154 17 H 0.142 0.858 18 C -0.141 4.141 19 C -0.085 4.085 20 H 0.131 0.869 21 C -0.041 4.041 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.037 4.037 26 Cl -0.077 7.077 27 C -0.047 4.047 28 H 0.264 0.736 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -22.242 5.027 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.253 6.253 14 C 0.326 3.674 15 O -0.387 6.387 16 C -0.173 4.173 17 H 0.160 0.840 18 C -0.178 4.178 19 C -0.103 4.103 20 H 0.148 0.852 21 C -0.041 4.041 22 C -0.124 4.124 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.064 4.064 26 Cl -0.048 7.048 27 C -0.066 4.066 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.074 -22.243 4.590 26.719 hybrid contribution -0.285 0.935 -0.323 1.030 sum 13.789 -21.308 4.267 25.737 Atomic orbital electron populations 1.69965 1.06113 1.27106 1.50625 1.24955 0.94986 0.99471 0.95122 0.86277 0.80045 0.82524 0.77637 1.19445 1.20831 1.20799 1.21086 0.94128 0.89271 1.50718 0.91459 1.20240 0.88756 0.83527 0.95489 1.87917 1.35305 1.12598 1.95220 1.22320 0.93272 0.85492 1.00518 1.23199 0.93620 0.98711 0.84185 1.86579 1.43247 1.53905 1.41520 1.22551 0.79161 0.78139 0.87531 1.90730 1.66879 1.37751 1.43318 1.21850 0.91195 1.07104 0.97123 0.84047 1.23250 0.93446 0.96042 1.05068 1.21190 1.00372 0.89968 0.98743 0.85163 1.18790 0.99327 0.93248 0.92749 1.20915 0.99917 0.92285 0.99317 1.20938 1.00777 0.99714 0.92151 1.20967 1.00787 0.93278 0.97984 1.20746 1.05325 0.93729 0.86551 1.98366 1.92903 1.87973 1.25567 1.20681 0.95567 0.99288 0.91029 0.92673 0.97629 0.97505 0.91975 0.93239 0.90536 0.90498 0.86312 0.87529 0.85765 0.85449 0.85465 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.21 9.43 -34.44 -0.32 -15.53 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.34 5.69 36.01 0.20 5.54 16 10 O -0.39 -9.54 10.30 -38.79 -0.40 -9.94 16 11 C 0.06 1.14 6.33 37.16 0.24 1.38 16 12 C 0.08 1.23 5.84 37.16 0.22 1.45 16 13 O -0.34 -5.61 10.19 -42.01 -0.43 -6.04 16 14 C 0.48 6.87 7.60 36.01 0.27 7.15 16 15 O -0.50 -7.65 11.46 -18.75 -0.21 -7.87 16 16 C -0.15 -1.58 6.30 -91.77 -0.58 -2.16 16 17 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.14 -1.21 9.57 -26.75 -0.26 -1.47 16 19 C -0.08 -0.71 6.04 -91.79 -0.55 -1.27 16 20 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.04 -0.43 4.37 -104.63 -0.46 -0.88 16 22 C -0.11 -0.98 9.74 -39.58 -0.39 -1.36 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.45 16 24 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 25 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 26 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 27 C -0.05 -0.57 5.96 -39.55 -0.24 -0.80 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 1.01 6.18 -51.93 -0.32 0.69 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.55 5.78 -52.49 -0.30 1.25 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -33.64 359.10 -9.65 -43.30 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.24 Total: -2.99 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.99 Total: -10.13 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.04 Total: -23.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.64 -9.65 -43.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815203462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.968 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds