Wall clock time and date at job start Tue Mar 31 2020 14:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99904 * 2 1 4 4 H 1.48492 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47025 * 300.00438 * 3 2 1 6 6 H 1.48503 * 109.46882 * 59.99984 * 3 2 1 7 7 C 1.37881 * 120.00622 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99484 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99930 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47208 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47509 * 64.99624 * 12 11 10 14 14 C 1.34226 * 117.00028 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00255 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99610 * 180.02562 * 14 13 12 17 17 H 1.08993 * 115.56306 * 34.31235 * 16 14 13 18 18 C 1.53002 * 117.49365 * 248.62269 * 16 14 13 19 19 C 1.53003 * 117.49370 * 180.02562 * 16 14 13 20 20 H 1.08997 * 117.51080 * 214.96681 * 19 16 14 21 21 C 1.50692 * 117.50119 * 359.97438 * 19 16 14 22 22 C 1.38272 * 119.99271 * 240.01746 * 21 19 16 23 23 C 1.38219 * 120.02538 * 180.27934 * 22 21 19 24 24 C 1.38240 * 120.01161 * 359.44036 * 23 22 21 25 25 C 1.38321 * 119.98729 * 0.53568 * 24 23 22 26 26 Cl 1.73599 * 120.01374 * 179.76678 * 25 24 23 27 27 C 1.38194 * 119.99475 * 59.99031 * 21 19 16 28 28 H 0.96997 * 120.00582 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47157 * 60.00009 * 9 7 2 30 30 H 1.08994 * 109.47227 * 300.00038 * 9 7 2 31 31 H 1.08995 * 109.47345 * 60.00149 * 11 10 9 32 32 H 1.08997 * 109.46703 * 299.99979 * 11 10 9 33 33 H 1.09000 * 109.46708 * 304.99870 * 12 11 10 34 34 H 1.08994 * 109.47059 * 184.99996 * 12 11 10 35 35 H 1.08997 * 117.49533 * 145.02643 * 18 16 14 36 36 H 1.08999 * 117.50344 * 359.97438 * 18 16 14 37 37 H 1.08002 * 119.98328 * 359.97438 * 22 21 19 38 38 H 1.08002 * 119.99099 * 179.70395 * 23 22 21 39 39 H 1.08002 * 120.00536 * 180.25939 * 24 23 22 40 40 H 1.07993 * 120.00538 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0017 11 6 1.5653 -4.8754 -0.0024 12 6 2.6483 -5.9561 -0.0030 13 8 3.3997 -5.8892 1.2376 14 6 4.3945 -6.7763 1.3962 15 8 4.6300 -7.5818 0.5269 16 6 5.2177 -6.7675 2.6585 17 1 4.6810 -6.4983 3.5681 18 6 6.6797 -6.3309 2.5453 19 6 6.3374 -7.8033 2.7788 20 1 6.5375 -8.2159 3.7676 21 6 6.5322 -8.7544 1.6263 22 6 6.4115 -10.1172 1.8268 23 6 6.5958 -10.9905 0.7714 24 6 6.8894 -10.5013 -0.4878 25 6 7.0098 -9.1381 -0.6890 26 17 7.3845 -8.5233 -2.2687 27 6 6.8309 -8.2645 0.3691 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8896 31 1 0.9448 -4.9818 -0.8922 32 1 0.9456 -4.9830 0.8877 33 1 3.3218 -5.7950 -0.8448 34 1 2.1824 -6.9373 -0.0931 35 1 7.1049 -5.7745 3.3806 36 1 7.0463 -6.0504 1.5579 37 1 6.1781 -10.4996 2.8095 38 1 6.5061 -12.0551 0.9296 39 1 7.0292 -11.1835 -1.3132 40 1 6.9251 -7.2001 0.2126 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815203462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:50 Heat of formation + Delta-G solvation = -101.475072 kcal Electronic energy + Delta-G solvation = -24231.642150 eV Core-core repulsion = 20423.878924 eV Total energy + Delta-G solvation = -3807.763226 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.94237 -40.33162 -38.83924 -38.08207 -37.28866 -36.85290 -34.96529 -31.95611 -31.61147 -31.45750 -29.09662 -26.35998 -24.97401 -24.56917 -23.56855 -23.33505 -21.95898 -21.02534 -19.13250 -18.71504 -18.21101 -17.89173 -17.12144 -16.97504 -16.50811 -16.38875 -16.31479 -16.07557 -15.52897 -15.22321 -14.69781 -14.59735 -14.51399 -14.23723 -13.88215 -13.63818 -13.19577 -13.02204 -12.92712 -12.80984 -12.70016 -12.51939 -12.45555 -12.19391 -12.02534 -11.83568 -11.70148 -11.65993 -11.55593 -11.32562 -11.28587 -10.92061 -10.30211 -9.55529 -9.39847 -8.34125 -6.46442 0.23571 0.37450 1.13870 1.22546 1.39518 1.40842 1.55654 1.63618 2.33348 2.55011 2.99781 3.00864 3.03673 3.42157 3.68932 3.73261 3.80936 3.90484 3.94085 4.06744 4.15959 4.28588 4.37873 4.38949 4.47012 4.52285 4.63053 4.70899 4.82624 4.84686 4.90428 4.98391 5.06543 5.14863 5.35506 5.44192 5.47491 5.52733 5.59214 5.92923 5.95070 6.47377 6.75017 6.78474 7.25263 8.78398 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.002542 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.414135 B =11013.511054 C =11360.309909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.054 3.946 12 C 0.083 3.917 13 O -0.359 6.359 14 C 0.475 3.525 15 O -0.513 6.513 16 C -0.169 4.169 17 H 0.161 0.839 18 C -0.139 4.139 19 C -0.068 4.068 20 H 0.168 0.832 21 C -0.054 4.054 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.059 4.059 26 Cl -0.091 7.091 27 C -0.066 4.066 28 H 0.272 0.728 29 H -0.009 1.009 30 H -0.010 1.010 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.851 -23.023 6.776 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.023 4.023 12 C 0.009 3.991 13 O -0.276 6.276 14 C 0.320 3.680 15 O -0.402 6.402 16 C -0.188 4.188 17 H 0.179 0.821 18 C -0.176 4.176 19 C -0.086 4.086 20 H 0.186 0.814 21 C -0.054 4.054 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.085 4.085 26 Cl -0.062 7.062 27 C -0.085 4.085 28 H 0.081 0.919 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.165 0.835 36 H 0.107 0.893 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.157 0.843 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.959 -23.053 6.338 28.203 hybrid contribution -0.572 1.044 -0.878 1.479 sum 14.388 -22.009 5.460 26.855 Atomic orbital electron populations 1.70059 1.07692 1.28681 1.50422 1.25953 0.95990 1.03349 0.93845 0.85137 0.78616 0.77283 0.78380 1.18946 1.19631 1.19418 1.21401 0.94045 0.90893 1.52377 0.92239 1.19876 0.88564 0.84404 0.93850 1.87864 1.35543 1.14186 1.95317 1.22633 0.94521 0.83409 1.01698 1.23074 0.92991 0.98867 0.84128 1.86576 1.44315 1.55248 1.41425 1.23386 0.78621 0.77275 0.88734 1.90730 1.67014 1.38225 1.44260 1.22026 0.91517 1.09542 0.95675 0.82123 1.23391 0.91926 0.96985 1.05295 1.21414 0.98159 0.89352 0.99634 0.81420 1.19106 0.99173 0.94506 0.92664 1.21330 0.98566 0.91667 1.00793 1.21352 0.99293 1.01355 0.91382 1.21236 1.00778 0.92707 0.99299 1.20984 1.06730 0.94692 0.86091 1.98350 1.93097 1.88253 1.26522 1.20708 0.97008 0.98620 0.92166 0.91946 0.99127 0.99208 0.90283 0.92505 0.91618 0.87738 0.83516 0.89289 0.82686 0.82456 0.84263 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -33.19 9.43 25.60 0.24 -32.94 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.80 5.69 71.24 0.41 12.21 16 10 O -0.41 -20.55 10.30 -145.58 -1.50 -22.05 16 11 C 0.05 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.69 5.84 71.98 0.42 3.11 16 13 O -0.36 -12.05 10.19 -48.73 -0.50 -12.55 16 14 C 0.48 13.45 7.60 71.24 0.54 13.99 16 15 O -0.51 -15.85 11.46 21.96 0.25 -15.60 16 16 C -0.17 -3.21 6.30 -11.54 -0.07 -3.29 16 17 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 18 C -0.14 -2.18 9.57 30.58 0.29 -1.89 16 19 C -0.07 -0.97 6.04 -11.55 -0.07 -1.04 16 20 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 21 C -0.05 -1.04 4.37 -19.87 -0.09 -1.13 16 22 C -0.11 -1.64 9.74 22.27 0.22 -1.42 16 23 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 24 C -0.12 -2.39 9.83 22.29 0.22 -2.17 16 25 C -0.06 -1.42 6.32 22.32 0.14 -1.28 16 26 Cl -0.09 -2.28 28.96 -2.72 -0.08 -2.36 16 27 C -0.07 -1.61 5.96 22.29 0.13 -1.48 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.10 2.78 8.13 -2.39 -0.02 2.77 16 35 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.73 6.18 -2.39 -0.01 1.71 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 38 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.11 2.87 5.78 -2.91 -0.02 2.86 16 Total: -1.00 -74.25 359.10 5.06 -69.19 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.05 Total: 7.89 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 3.52 Total: -15.53 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -1.74 Total: -50.19 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -74.25 5.06 -69.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815203462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.288 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds