Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46983 * 65.00497 * 12 11 10 14 14 C 1.34234 * 116.99636 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.27435 * 300.70703 * 16 14 13 18 18 C 1.54350 * 110.30248 * 178.63113 * 16 14 13 19 19 C 1.54608 * 102.27488 * 267.39808 * 18 16 14 20 20 C 1.51363 * 105.18650 * 333.64103 * 19 18 16 21 21 C 1.38241 * 109.76107 * 17.20138 * 20 19 18 22 22 C 1.38463 * 119.85570 * 179.97438 * 21 20 19 23 23 C 1.38150 * 120.24634 * 359.97438 * 22 21 20 24 24 C 1.38195 * 119.94819 * 0.02562 * 23 22 21 25 25 C 1.38262 * 119.91872 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.90528 * 180.02562 * 25 24 23 27 27 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 29 29 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 30 30 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 31 31 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 32 32 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 33 33 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 34 34 H 1.09001 * 110.82063 * 25.65162 * 18 16 14 35 35 H 1.08996 * 110.82449 * 149.20377 * 18 16 14 36 36 H 1.08998 * 110.28411 * 214.71569 * 19 18 16 37 37 H 1.08999 * 110.30731 * 92.57638 * 19 18 16 38 38 H 1.07999 * 119.87354 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.02956 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.03781 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 8 3.4004 -5.8883 1.2396 14 6 4.3946 -6.7760 1.3985 15 8 4.6291 -7.5826 0.5300 16 6 5.2193 -6.7659 2.6598 17 1 5.7070 -5.7991 2.7844 18 6 6.2708 -7.8951 2.6213 19 6 5.5324 -9.0560 3.3266 20 6 4.5284 -8.3892 4.2422 21 6 4.3484 -7.0732 3.8591 22 6 3.4681 -6.2657 4.5593 23 6 2.7688 -6.7705 5.6385 24 6 2.9479 -8.0860 6.0223 25 6 3.8264 -8.8943 5.3249 26 17 4.0505 -10.5470 5.8070 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 0.9453 -4.9822 0.8903 31 1 0.9448 -4.9826 -0.8898 32 1 2.1822 -6.9374 -0.0898 33 1 3.3212 -5.7956 -0.8429 34 1 6.5182 -8.1592 1.5931 35 1 7.1653 -7.6108 3.1755 36 1 6.2352 -9.6536 3.9071 37 1 5.0201 -9.6793 2.5936 38 1 3.3270 -5.2376 4.2600 39 1 2.0827 -6.1377 6.1818 40 1 2.4023 -8.4820 6.8660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815229546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -123.705613 kcal Electronic energy + Delta-G solvation = -24404.608063 eV Core-core repulsion = 20595.880848 eV Total energy + Delta-G solvation = -3808.727215 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.17272 -39.69174 -37.28510 -36.77766 -36.22737 -35.51303 -32.80304 -31.68102 -30.18338 -29.43216 -28.16926 -26.91780 -23.63007 -22.91953 -22.40246 -21.84526 -21.36084 -20.18476 -18.00680 -17.15152 -16.76072 -16.40190 -16.13699 -15.83473 -15.59472 -15.20324 -14.72041 -14.64768 -14.32161 -13.94510 -13.65796 -13.58288 -13.38466 -12.79421 -12.65817 -12.23919 -12.03469 -11.90724 -11.80431 -11.57353 -11.48911 -11.35968 -11.30552 -11.07437 -10.96912 -10.87661 -10.79141 -10.51616 -10.40539 -10.08098 -9.17242 -8.96568 -8.89675 -8.87777 -8.24302 -6.14480 -4.16469 0.85714 0.93676 1.87638 2.20831 2.70274 3.29989 3.32821 3.35675 3.36540 3.96530 4.12296 4.29703 4.49982 4.65207 4.69470 4.71889 4.86602 4.98770 5.09891 5.18015 5.20004 5.22010 5.33699 5.41230 5.42621 5.52506 5.63196 5.73012 5.81293 5.84001 5.90117 5.95123 6.05720 6.12369 6.21238 6.49432 6.56829 7.02368 7.36682 7.74719 7.79118 8.09603 8.49212 8.95707 9.48361 10.96984 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.002625 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.241526 B =10665.448242 C =11245.532047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.074 3.926 13 O -0.335 6.335 14 C 0.473 3.527 15 O -0.511 6.511 16 C -0.044 4.044 17 H 0.125 0.875 18 C -0.108 4.108 19 C -0.082 4.082 20 C -0.079 4.079 21 C -0.085 4.085 22 C -0.078 4.078 23 C -0.109 4.109 24 C -0.103 4.103 25 C -0.028 4.028 26 Cl -0.075 7.075 27 H 0.265 0.735 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 -19.373 11.409 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.251 6.251 14 C 0.316 3.684 15 O -0.399 6.399 16 C -0.063 4.063 17 H 0.143 0.857 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.085 4.085 22 C -0.096 4.096 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.055 4.055 26 Cl -0.046 7.046 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.687 -19.586 11.158 24.158 hybrid contribution -0.171 0.723 -0.065 0.746 sum 8.516 -18.863 11.093 23.482 Atomic orbital electron populations 1.69946 1.06107 1.27342 1.50378 1.24947 0.94983 0.99437 0.95078 0.86389 0.79320 0.81853 0.78882 1.19998 1.21132 1.19961 1.21003 0.94045 0.89292 1.51076 0.91569 1.20226 0.88728 0.83467 0.95488 1.87915 1.35316 1.12589 1.95228 1.22313 0.93228 0.85455 1.00558 1.23234 0.93690 0.98793 0.84238 1.86595 1.43205 1.53740 1.41544 1.23229 0.79166 0.77996 0.88048 1.90625 1.67810 1.38109 1.43388 1.20506 0.94102 1.03663 0.88061 0.85736 1.22403 0.96326 0.92474 1.03304 1.21150 0.95966 0.98047 0.96760 1.20423 0.97879 0.94925 0.94791 1.20014 0.98581 0.93766 0.96145 1.20959 0.93893 1.00788 0.93945 1.21081 0.99734 0.94771 0.97146 1.21033 0.97503 0.93763 0.99908 1.20433 1.01092 0.86304 0.97654 1.98360 1.96409 1.18549 1.91302 0.92546 0.97636 0.97522 0.93218 0.91954 0.90516 0.90418 0.88168 0.89302 0.89758 0.89322 0.84303 0.84370 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.03 9.43 -34.44 -0.32 -15.36 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.26 5.69 36.01 0.20 5.47 16 10 O -0.39 -9.31 10.30 -38.80 -0.40 -9.70 16 11 C 0.06 1.12 6.33 37.16 0.24 1.36 16 12 C 0.07 1.17 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.48 10.17 -42.03 -0.43 -5.91 16 14 C 0.47 6.85 7.26 36.01 0.26 7.11 16 15 O -0.51 -8.12 15.21 -18.75 -0.29 -8.41 16 16 C -0.04 -0.49 3.37 -91.89 -0.31 -0.80 16 17 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.11 -0.98 6.41 -25.18 -0.16 -1.14 16 19 C -0.08 -0.77 6.47 -26.71 -0.17 -0.94 16 20 C -0.08 -0.85 6.05 -104.17 -0.63 -1.48 16 21 C -0.08 -0.96 5.42 -104.21 -0.56 -1.52 16 22 C -0.08 -0.85 10.04 -39.53 -0.40 -1.25 16 23 C -0.11 -1.04 10.04 -39.63 -0.40 -1.43 16 24 C -0.10 -0.97 9.83 -39.59 -0.39 -1.35 16 25 C -0.03 -0.29 6.32 -39.45 -0.25 -0.54 16 26 Cl -0.08 -0.71 28.71 -51.86 -1.49 -2.20 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.10 0.97 6.96 -51.93 -0.36 0.61 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -32.57 361.15 -9.62 -42.19 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.40 Total: -3.17 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.78 Total: -8.98 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -1.11 Total: -24.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.49 Total: -2.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.57 -9.62 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.512 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds