Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48499 * 109.47441 * 240.00400 * 3 2 1 5 5 H 1.48505 * 109.46790 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46958 * 119.99986 * 3 2 1 7 7 C 1.37883 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99662 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46983 * 65.00497 * 12 11 10 14 14 C 1.34234 * 116.99636 * 179.97438 * 13 12 11 15 15 O 1.20823 * 120.00397 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99689 * 179.97438 * 14 13 12 17 17 H 1.09000 * 110.27435 * 300.70703 * 16 14 13 18 18 C 1.54350 * 110.30248 * 178.63113 * 16 14 13 19 19 C 1.54608 * 102.27488 * 267.39808 * 18 16 14 20 20 C 1.51363 * 105.18650 * 333.64103 * 19 18 16 21 21 C 1.38241 * 109.76107 * 17.20138 * 20 19 18 22 22 C 1.38463 * 119.85570 * 179.97438 * 21 20 19 23 23 C 1.38150 * 120.24634 * 359.97438 * 22 21 20 24 24 C 1.38195 * 119.94819 * 0.02562 * 23 22 21 25 25 C 1.38262 * 119.91872 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.90528 * 180.02562 * 25 24 23 27 27 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 29 29 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 30 30 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 31 31 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 32 32 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 33 33 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 34 34 H 1.09001 * 110.82063 * 25.65162 * 18 16 14 35 35 H 1.08996 * 110.82449 * 149.20377 * 18 16 14 36 36 H 1.08998 * 110.28411 * 214.71569 * 19 18 16 37 37 H 1.08999 * 110.30731 * 92.57638 * 19 18 16 38 38 H 1.07999 * 119.87354 * 180.02562 * 22 21 20 39 39 H 1.07995 * 120.02956 * 180.02562 * 23 22 21 40 40 H 1.07998 * 120.03781 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6483 -5.9561 -0.0006 13 8 3.4004 -5.8883 1.2396 14 6 4.3946 -6.7760 1.3985 15 8 4.6291 -7.5826 0.5300 16 6 5.2193 -6.7659 2.6598 17 1 5.7070 -5.7991 2.7844 18 6 6.2708 -7.8951 2.6213 19 6 5.5324 -9.0560 3.3266 20 6 4.5284 -8.3892 4.2422 21 6 4.3484 -7.0732 3.8591 22 6 3.4681 -6.2657 4.5593 23 6 2.7688 -6.7705 5.6385 24 6 2.9479 -8.0860 6.0223 25 6 3.8264 -8.8943 5.3249 26 17 4.0505 -10.5470 5.8070 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 0.9453 -4.9822 0.8903 31 1 0.9448 -4.9826 -0.8898 32 1 2.1822 -6.9374 -0.0898 33 1 3.3212 -5.7956 -0.8429 34 1 6.5182 -8.1592 1.5931 35 1 7.1653 -7.6108 3.1755 36 1 6.2352 -9.6536 3.9071 37 1 5.0201 -9.6793 2.5936 38 1 3.3270 -5.2376 4.2600 39 1 2.0827 -6.1377 6.1818 40 1 2.4023 -8.4820 6.8660 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815229546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -140.465054 kcal Electronic energy + Delta-G solvation = -24405.334806 eV Core-core repulsion = 20595.880848 eV Total energy + Delta-G solvation = -3809.453958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.15187 -40.68131 -38.80280 -37.76203 -37.43695 -36.40206 -34.94877 -32.54796 -31.62277 -30.20682 -29.27318 -28.74056 -24.80683 -24.43860 -23.73774 -23.09936 -22.14335 -21.16650 -19.08718 -18.69306 -18.12482 -17.91846 -17.35665 -16.94564 -16.61488 -16.42361 -16.27562 -16.10569 -15.63950 -15.02135 -14.78264 -14.56639 -14.26874 -14.12192 -13.97401 -13.71797 -13.22782 -12.97173 -12.93273 -12.73340 -12.69582 -12.57418 -12.50415 -12.30463 -12.13742 -12.11193 -11.99568 -11.82572 -11.75268 -11.61800 -11.29932 -10.89672 -10.28281 -9.76284 -9.65290 -8.32203 -6.44514 0.05495 0.15821 1.05656 1.14414 1.40889 1.45182 1.53626 1.61906 2.34394 2.55284 3.01830 3.04215 3.19035 3.32390 3.59374 3.83507 3.89775 3.95873 4.05453 4.07624 4.21138 4.35731 4.38800 4.41989 4.48563 4.56141 4.64976 4.68815 4.76437 4.84868 4.93396 5.00862 5.09838 5.17026 5.20619 5.34364 5.38408 5.42548 5.54021 5.74696 5.94738 6.48710 6.63182 6.78787 7.27041 8.79741 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.002625 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.241526 B =10665.448242 C =11245.532047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.407 6.407 11 C 0.055 3.945 12 C 0.078 3.922 13 O -0.353 6.353 14 C 0.471 3.529 15 O -0.528 6.528 16 C -0.044 4.044 17 H 0.137 0.863 18 C -0.101 4.101 19 C -0.081 4.081 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.092 4.092 23 C -0.110 4.110 24 C -0.102 4.102 25 C -0.039 4.039 26 Cl -0.069 7.069 27 H 0.271 0.729 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -19.424 12.343 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.021 4.021 12 C 0.004 3.996 13 O -0.269 6.269 14 C 0.315 3.685 15 O -0.418 6.418 16 C -0.063 4.063 17 H 0.154 0.846 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.065 4.065 26 Cl -0.040 7.040 27 H 0.080 0.920 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.150 0.850 39 H 0.176 0.824 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.571 -19.667 12.094 24.993 hybrid contribution -0.498 0.628 -0.328 0.866 sum 9.073 -19.038 11.766 24.150 Atomic orbital electron populations 1.70048 1.07695 1.28762 1.50335 1.25931 0.95953 1.03285 0.93880 0.85264 0.78143 0.76808 0.79398 1.19121 1.19979 1.18913 1.21348 0.94095 0.90857 1.52481 0.92095 1.19857 0.88543 0.84361 0.93830 1.87861 1.35447 1.14082 1.95315 1.22610 0.94423 0.83412 1.01701 1.23177 0.93217 0.98963 0.84218 1.86598 1.44001 1.54693 1.41599 1.23908 0.78616 0.77107 0.88878 1.90608 1.68202 1.38653 1.44306 1.20678 0.94084 1.05187 0.86369 0.84561 1.22445 0.96555 0.91498 1.03304 1.21163 0.95987 0.98108 0.96488 1.20597 0.98245 0.94830 0.95135 1.20078 0.99162 0.94268 0.96394 1.21072 0.94525 1.00677 0.94786 1.21335 0.99559 0.95195 0.96669 1.21318 0.97034 0.93531 1.00156 1.20616 1.01316 0.86807 0.97789 1.98360 1.96397 1.18036 1.91199 0.91985 0.99162 0.99250 0.92670 0.90166 0.87875 0.90828 0.88857 0.86695 0.88119 0.90325 0.85010 0.82397 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -32.51 9.43 25.60 0.24 -32.27 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.58 5.69 71.24 0.41 11.98 16 10 O -0.41 -19.74 10.30 -145.57 -1.50 -21.24 16 11 C 0.06 2.00 6.33 71.98 0.46 2.46 16 12 C 0.08 2.42 5.84 71.98 0.42 2.85 16 13 O -0.35 -11.55 10.17 -48.81 -0.50 -12.05 16 14 C 0.47 13.53 7.26 71.24 0.52 14.04 16 15 O -0.53 -16.65 15.21 21.97 0.33 -16.32 16 16 C -0.04 -0.96 3.37 -11.62 -0.04 -1.00 16 17 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 18 C -0.10 -1.69 6.41 31.60 0.20 -1.49 16 19 C -0.08 -1.41 6.47 30.61 0.20 -1.21 16 20 C -0.09 -1.78 6.05 -19.57 -0.12 -1.90 16 21 C -0.10 -2.16 5.42 -19.60 -0.11 -2.27 16 22 C -0.09 -1.99 10.04 22.30 0.22 -1.77 16 23 C -0.11 -1.95 10.04 22.24 0.22 -1.72 16 24 C -0.10 -1.74 9.83 22.27 0.22 -1.52 16 25 C -0.04 -0.75 6.32 22.35 0.14 -0.61 16 26 Cl -0.07 -1.20 28.71 -2.72 -0.08 -1.28 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.10 2.67 8.13 -2.39 -0.02 2.65 16 33 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 34 H 0.09 1.72 6.96 -2.39 -0.02 1.70 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 39 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.56 361.15 5.06 -64.50 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.05 Total: 8.94 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 3.45 Total: -13.50 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.28 Total: -54.85 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -1.66 Total: -49.61 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -69.56 5.06 -64.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815229546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.968 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds